Rh1DG336900

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003208
Physical Location & Seq
Reverse (-)
56220162 .. 56221124
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG336900.1

Sequence Viewer

Length: 207 bp
ATGGATGACTTCCTGTGGCCACTCCTGCGAAAGCTGTTGCCGGGTTTGAAGAGATGGTTGTTGGGACTCAGTGAAACTGGGCATATCATTCTTGTTGGCCTTTGTGACTATCAGGATGACAAAGCTGATTTGATTCTCAAGTACATGCCTGATGAGCCTAGGCCGCTGAAGCTTAGGATGAAGGTGGTGCTGATGCATGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

68

Amino Acids

7.93

Weight (kDa)

7.9

Isoelectric Point (pI)

67.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 3 cut(s) 34, 125, 172
AluI AGCT 3 cut(s) 34, 125, 172
AoxI GGCC 3 cut(s) 17, 97, 161
AspA2I CCTAGG 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 42
AvrII CCTAGG 1 cut(s) 158
BalI TGGCCA 1 cut(s) 19
BccI CCATC 1 cut(s) 48
BcnI CCSGG 1 cut(s) 42
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 164
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 3 cut(s) 10, 121, 183
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 82
BshFI GGCC 3 cut(s) 19, 99, 163
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 3 cut(s) 19, 99, 163
BspACI CCGC 1 cut(s) 164
BspANI GGCC 3 cut(s) 19, 99, 163
BspCNI CTCAG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 68, 173
BstF5I GGATG 3 cut(s) 10, 121, 183
BstMWI GCNNNNNNNGC 4 cut(s) 25, 154, 163, 169
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 40
BsuRI GGCC 3 cut(s) 19, 99, 163
BtsCI GGATG 3 cut(s) 10, 121, 183
BtsIMutI CAGTG 1 cut(s) 76
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 145, 197
CviJI RGCY 7 cut(s) 19, 34, 99, 125, 157, 163, 172
CviKI_1 RGCY 7 cut(s) 19, 34, 99, 125, 157, 163, 172
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 68, 173
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 148, 200
FaiI YATR 3 cut(s) 84, 146, 198
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 144, 196
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 3 cut(s) 17, 128, 190
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 3 cut(s) 19, 99, 163
HapII CCGG 1 cut(s) 41
Hin1II CATG 2 cut(s) 148, 200
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 66, 133
HpaII CCGG 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 154, 163, 169
HpyF3I CTNAG 2 cut(s) 68, 173
Hsp92II CATG 2 cut(s) 148, 200
LpnPI CCDG 6 cut(s) 26, 38, 54, 63, 98, 162
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 1 cut(s) 61
MlsI TGGCCA 1 cut(s) 19
MluNI TGGCCA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 60
Mox20I TGGCCA 1 cut(s) 19
Mph1103I ATGCAT 1 cut(s) 198
MscI TGGCCA 1 cut(s) 19
Msp20I TGGCCA 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 25, 154, 163, 169
NciI CCSGG 1 cut(s) 42
NlaIII CATG 2 cut(s) 148, 200
NmuCI GTSAC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 1 cut(s) 148
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 164
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 42
SetI ASST 4 cut(s) 36, 127, 174, 186
SfaNI GCATC 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 1 cut(s) 164
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 158
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 1 cut(s) 133
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 76
XceI RCATGY 1 cut(s) 148
XmaJI CCTAGG 1 cut(s) 158
XspI CTAG 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.