Rorug02G0196600

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
18326398 .. 18330057
3660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0196600.1

Sequence Viewer

Length: 1230 bp
ATGGGCAGTGAAGAACAAAGCTTTGAGGATGCGAAACTGGTTGCTGATGCAATGGATAATACTCAGGCATGTGCATCAAAGGAAGGTAAGCGAAAGCGTCTGTGGAAGAAGGTGAAGTATCAGCTGGTTGAGTACCACTCTTTGCCCCACTATTTAAGGGACAATGAGTATATCGTGGGTCATTACCGCTGTGAGTGGCCATTGAAGCAGGTCTTGCTCAGTATGTTCACCATCCACAATGAGACGCTGAACGTTTGGACGCATTTGATCGGGTTCTTCCTTTTTCTTGCCCTGACCATATACACTGCAATGAAGGTTCCAGAGGTCGTTGATCTTCATGTCCTACCAGATGTGCTGAAAAATGCTGATCTTCACAAGTTGCGTGAAGAACTCATGACATGCCTCCCGTCATTACCCAACATGCCTGATCTGAACAAACTCAGGGAGGAGTTAAAGACTTCATTGCCTTCAATGGATCTTCTTCCCTCACTCTCTGGTTGGCATGTTATGGAACTTCTGAATAATTGTTTGCCTCAGAGGTTCTCCCACGGCAACCACACTGATGTTTGTGTTCTGCATAGCATGAAGGAAGATTTAGCAAACATAATAGCACCATTGGTGTTGAGACCAATCACACGGTGGCCATTTTTTGCTTTCTTGGGAGGAGCAATGTTTTGTTTGCTGGCCAGTAGCGCTTGCCATCTTCTCTCTTGTCACTCTGAGCGAATGTCATATATCATGCTCAGGCTGGACTATGCTGGAATTGCAGCCCTCATATCCACCTCATTTTACCCTCTTGTCTACTACTCCTTCATGTGCAACCCTTTCTTCTGCACCCTTTACTTGGGGTTCATAACCATCTTGGGAATTGCCTCAGTCTTGGTTTCCCTCTTACCCGTCTTTCAAACTCCTCAGTACCGTAGTGTTCGTGCATCTCTTTTCTTCGGCATGGGCTTGTCAGGCATTCTACCTATCCTCCACAAGGTTATCTTGTTTTCGGACCAACCCGAGGCACTCCACACAACTGGGTATGAGATTCTCATGGGGCTCTTCTATGGGGTTGGGGCACTGGTTTATGCAACGAGGATTCCAGAACGATGGATGCCTGGGAAATTCGACATTGCAGGGCACAGCCACCAACTGTTTCACGTACTGGTAGTCGCAGGCGCATACACTCATTACCGTGCAGGGCTTGTTTACTTGAAGTGGCGCGATTTAGAAGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

46.6

Weight (kDa)

7.02

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 76 - 105 2.3e-06 Haemolysin-III related
HlyIII PF03006 209 - 394 3.1e-56 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 801
AccII CGCG 1 cut(s) 1212
AciI CCGC 1 cut(s) 187
AclI AACGTT 1 cut(s) 252
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 3 cut(s) 197, 641, 684
AcsI RAATTY 1 cut(s) 1112
AdeI CACNNNGTG 1 cut(s) 639
AfaI GTAC 3 cut(s) 134, 917, 1152
AfeI AGCGCT 1 cut(s) 694
AfiI CCNNNNNNNGG 3 cut(s) 844, 982, 1009
AgsI TTSAA 4 cut(s) 205, 471, 905, 1204
AjnI CCWGG 1 cut(s) 1105
AluBI AGCT 2 cut(s) 21, 124
AluI AGCT 2 cut(s) 21, 124
Alw26I GTCTC 2 cut(s) 236, 619
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 1007
Aor51HI AGCGCT 1 cut(s) 694
AoxI GGCC 3 cut(s) 197, 641, 684
ApeKI GCWGC 1 cut(s) 767
ApoI RAATTY 1 cut(s) 1112
AspLEI GCGC 3 cut(s) 695, 1169, 1212
AspS9I GGNCC 1 cut(s) 1000
AsuHPI GGTGA 2 cut(s) 124, 220
AvaI CYCGRG 1 cut(s) 1007
AvaII GGWCC 1 cut(s) 1000
BaeGI GKGCMC 2 cut(s) 1069, 1131
BalI TGGCCA 3 cut(s) 199, 643, 686
BanII GRGCYC 1 cut(s) 1050
BbvI GCAGC 1 cut(s) 779
BccI CCATC 4 cut(s) 239, 708, 866, 1092
BceAI ACGGC 1 cut(s) 565
BciT130I CCWGG 1 cut(s) 1107
BcoDI GTCTC 2 cut(s) 236, 619
BfoI RGCGCY 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 769
Bme1390I CCNGG 1 cut(s) 1107
Bme18I GGWCC 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 1007
BmgT120I GGNCC 1 cut(s) 1000
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 1107
BmrI ACTGGG 1 cut(s) 1035
BmsI GCATC 5 cut(s) 19, 37, 83, 941, 1092
BmuI ACTGGG 1 cut(s) 1035
BplI GAGNNNNNCTC 2 cut(s) 122, 154
Bpu10I CCTNAGC 1 cut(s) 743
BsaAI YACGTR 1 cut(s) 1150
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 3 cut(s) 547, 1008, 1106
BsaXI ACNNNNNCTCC 2 cut(s) 960, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 844, 982, 1009
Bse1I ACTGG 5 cut(s) 42, 687, 1030, 1074, 1158
Bse3DI GCAATG 5 cut(s) 57, 315, 461, 675, 1119
BseBI CCWGG 1 cut(s) 1107
BseDI CCNNGG 3 cut(s) 547, 1008, 1106
BseGI GGATG 3 cut(s) 34, 231, 1107
BseLI CCNNNNNNNGG 3 cut(s) 844, 982, 1009
BseMI GCAATG 5 cut(s) 57, 315, 461, 675, 1119
BseMII CTCAG 8 cut(s) 77, 232, 454, 548, 711, 757, 888, 926
BseNI ACTGG 5 cut(s) 42, 687, 1030, 1074, 1158
BseRI GAGGAG 3 cut(s) 461, 678, 900
BseSI GKGCMC 2 cut(s) 1069, 1131
BseXI GCAGC 1 cut(s) 779
BsgI GTGCAG 2 cut(s) 817, 1206
Bsh1236I CGCG 1 cut(s) 1212
BshFI GGCC 3 cut(s) 199, 643, 686
BsiHKCI CYCGRG 1 cut(s) 1007
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 844, 982, 1009
BsmAI GTCTC 2 cut(s) 236, 619
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 963
BsnI GGCC 3 cut(s) 199, 643, 686
Bso31I GGTCTC 1 cut(s) 619
BsoBI CYCGRG 1 cut(s) 1007
Bsp1286I GDGCHC 3 cut(s) 1050, 1069, 1131
Bsp143I GATC 5 cut(s) 267, 331, 367, 427, 475
BspACI CCGC 1 cut(s) 187
BspANI GGCC 3 cut(s) 199, 643, 686
BspCNI CTCAG 8 cut(s) 76, 231, 453, 547, 712, 756, 887, 925
BspFNI CGCG 1 cut(s) 1212
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 199
BspPI GGATC 1 cut(s) 483
BspQI GCTCTTC 1 cut(s) 1055
BspTNI GGTCTC 1 cut(s) 619
BsrDI GCAATG 5 cut(s) 57, 315, 461, 675, 1119
BsrI ACTGG 5 cut(s) 42, 687, 1030, 1074, 1158
BssECI CCNNGG 3 cut(s) 547, 1008, 1106
BssMI GATC 5 cut(s) 267, 331, 367, 427, 475
Bst2UI CCWGG 1 cut(s) 1107
Bst4CI ACNGT 4 cut(s) 639, 920, 1143, 1184
Bst6I CTCTTC 1 cut(s) 1055
BstAPI GCANNNNNTGC 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 1150
BstC8I GCNNGC 3 cut(s) 684, 697, 1165
BstDEI CTNAG 8 cut(s) 63, 218, 440, 534, 720, 743, 874, 912
BstDSI CCRYGG 1 cut(s) 547
BstENI CCTNNNNNAGG 1 cut(s) 980
BstF5I GGATG 3 cut(s) 34, 231, 1107
BstFNI CGCG 1 cut(s) 1212
BstH2I RGCGCY 1 cut(s) 696
BstHHI GCGC 3 cut(s) 695, 1169, 1212
BstKTI GATC 5 cut(s) 270, 334, 370, 430, 478
BstMAI GTCTC 2 cut(s) 236, 619
BstMBI GATC 5 cut(s) 267, 331, 367, 427, 475
BstMWI GCNNNNNNNGC 5 cut(s) 205, 214, 692, 764, 960
BstNI CCWGG 1 cut(s) 1107
BstNSI RCATGY 4 cut(s) 72, 402, 424, 506
BstSCI CCNGG 1 cut(s) 1105
BstSLI GKGCMC 2 cut(s) 1069, 1131
BstUI CGCG 1 cut(s) 1212
BstV1I GCAGC 1 cut(s) 779
BstX2I RGATCY 1 cut(s) 475
BstXI CCANNNNNNTGG 2 cut(s) 1025, 1098
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 3 cut(s) 199, 643, 686
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 3 cut(s) 34, 231, 1107
BtsI GCAGTG 2 cut(s) 13, 303
BtsIMutI CAGTG 4 cut(s) 13, 303, 558, 1067
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 3 cut(s) 684, 697, 1165
CciI TCATGA 1 cut(s) 393
CfoI GCGC 3 cut(s) 695, 1169, 1212
Cfr13I GGNCC 1 cut(s) 1000
CseI GACGC 3 cut(s) 86, 253, 268
Csp6I GTAC 3 cut(s) 133, 916, 1151
CviQI GTAC 3 cut(s) 133, 916, 1151
DdeI CTNAG 8 cut(s) 63, 218, 440, 534, 720, 743, 874, 912
DpnI GATC 5 cut(s) 269, 333, 369, 429, 477
DpnII GATC 5 cut(s) 267, 331, 367, 427, 475
DraIII CACNNNGTG 1 cut(s) 639
EaeI YGGCCR 3 cut(s) 197, 641, 684
Eam1104I CTCTTC 1 cut(s) 1055
EarI CTCTTC 1 cut(s) 1055
Eco24I GRGCYC 1 cut(s) 1050
Eco31I GGTCTC 1 cut(s) 619
Eco47I GGWCC 1 cut(s) 1000
Eco47III AGCGCT 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 980
EcoRII CCWGG 1 cut(s) 1105
EcoT38I GRGCYC 1 cut(s) 1050
Esp3I CGTCTC 1 cut(s) 236
FalI AAGNNNNNCTT 4 cut(s) 197, 229, 974, 1006
FaqI GGGAC 1 cut(s) 173
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 1 cut(s) 768
FokI GGATG 3 cut(s) 41, 218, 1114
FriOI GRGCYC 1 cut(s) 1050
Fsp4HI GCNGC 1 cut(s) 768
GlaI GCGC 3 cut(s) 694, 1168, 1211
GluI GCNGC 1 cut(s) 768
HaeII RGCGCY 1 cut(s) 696
HaeIII GGCC 3 cut(s) 199, 643, 686
HgaI GACGC 3 cut(s) 86, 253, 268
HhaI GCGC 3 cut(s) 695, 1169, 1212
Hin6I GCGC 3 cut(s) 693, 1167, 1210
HinP1I GCGC 3 cut(s) 693, 1167, 1210
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 2 cut(s) 1036, 1087
HphI GGTGA 2 cut(s) 124, 220
Hpy166II GTNNAC 3 cut(s) 228, 802, 1198
Hpy188I TCNGA 5 cut(s) 432, 519, 537, 721, 1000
Hpy188III TCNNGA 3 cut(s) 320, 394, 1091
Hpy8I GTNNAC 3 cut(s) 228, 802, 1198
HpyAV CCTTC 7 cut(s) 77, 103, 307, 477, 580, 820, 1214
HpyCH4III ACNGT 4 cut(s) 639, 920, 1143, 1184
HpyCH4IV ACGT 2 cut(s) 252, 1149
HpyF10VI GCNNNNNNNGC 5 cut(s) 205, 214, 692, 764, 960
HpyF3I CTNAG 8 cut(s) 63, 218, 440, 534, 720, 743, 874, 912
HpySE526I ACGT 2 cut(s) 252, 1149
HspAI GCGC 3 cut(s) 693, 1167, 1210
Kzo9I GATC 5 cut(s) 267, 331, 367, 427, 475
LguI GCTCTTC 1 cut(s) 1055
LmnI GCTCC 1 cut(s) 665
Lsp1109I GCAGC 1 cut(s) 779
LweI GCATC 5 cut(s) 19, 37, 83, 941, 1092
MaeII ACGT 2 cut(s) 252, 1149
MaeIII GTNAC 1 cut(s) 713
MalI GATC 5 cut(s) 269, 333, 369, 429, 477
MboI GATC 5 cut(s) 267, 331, 367, 427, 475
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 3 cut(s) 1050, 1069, 1131
MlsI TGGCCA 3 cut(s) 199, 643, 686
MluCI AATT 4 cut(s) 523, 762, 867, 1112
MluNI TGGCCA 3 cut(s) 199, 643, 686
Mox20I TGGCCA 3 cut(s) 199, 643, 686
MscI TGGCCA 3 cut(s) 199, 643, 686
MseI TTAA 2 cut(s) 155, 452
MslI CAYNNNNRTG 3 cut(s) 308, 561, 1182
Msp20I TGGCCA 3 cut(s) 199, 643, 686
MspA1I CMGCKG 2 cut(s) 124, 189
MspR9I CCNGG 1 cut(s) 1107
Mva1269I GAATGC 1 cut(s) 963
MvaI CCWGG 1 cut(s) 1107
MvnI CGCG 1 cut(s) 1212
MwoI GCNNNNNNNGC 5 cut(s) 205, 214, 692, 764, 960
NdeII GATC 5 cut(s) 267, 331, 367, 427, 475
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 4 cut(s) 72, 402, 424, 506
PagI TCATGA 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 1055
PctI GAATGC 1 cut(s) 963
PfeI GAWTC 2 cut(s) 1036, 1087
PkrI GCNGC 1 cut(s) 769
Ppu21I YACGTR 1 cut(s) 1150
Psp1406I AACGTT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 1105
PspGI CCWGG 1 cut(s) 1105
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 1000
PsuI RGATCY 1 cut(s) 475
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 3 cut(s) 134, 917, 1152
RsaNI GTAC 3 cut(s) 133, 916, 1151
RseI CAYNNNNRTG 3 cut(s) 308, 561, 1182
SapI GCTCTTC 1 cut(s) 1055
SaqAI TTAA 2 cut(s) 155, 452
SatI GCNGC 1 cut(s) 768
Sau3AI GATC 5 cut(s) 267, 331, 367, 427, 475
Sau96I GGNCC 1 cut(s) 1000
ScrFI CCNGG 1 cut(s) 1107
SduI GDGCHC 3 cut(s) 1050, 1069, 1131
SfaNI GCATC 5 cut(s) 19, 37, 83, 941, 1092
SinI GGWCC 1 cut(s) 1000
SmiMI CAYNNNNRTG 3 cut(s) 308, 561, 1182
Sse9I AATT 4 cut(s) 523, 762, 867, 1112
SsiI CCGC 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 1105
TaaI ACNGT 4 cut(s) 639, 920, 1143, 1184
TaiI ACGT 2 cut(s) 255, 1152
TaqI TCGA 1 cut(s) 1116
TasI AATT 4 cut(s) 523, 762, 867, 1112
TfiI GAWTC 2 cut(s) 1036, 1087
Tru1I TTAA 2 cut(s) 155, 452
Tru9I TTAA 2 cut(s) 155, 452
TscAI CASTG 4 cut(s) 13, 310, 565, 1074
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 1 cut(s) 767
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 6 cut(s) 326, 326, 450, 599, 802, 841
TspRI CASTG 4 cut(s) 13, 310, 565, 1074
VpaK11BI GGWCC 1 cut(s) 1000
XagI CCTNNNNNAGG 1 cut(s) 980
XapI RAATTY 1 cut(s) 1112
XceI RCATGY 4 cut(s) 72, 402, 424, 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 636
XmiI GTMKAC 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.