Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003208

Physical Location & Seq

Genomic Coordinates Forward (+)

15920028 .. 15931832

Gene Structure 11805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG109100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCCCCGAAGGCCACTATCCCAGATTTTTGAAGATATCACCGTCTTTTGGGGTCTAAAGCCGTCAATCACGCGTCTGGAATTGATCGGCCAAGACCTTAACTTACTCATCAATGCTGACGGAGAACAAATTGGGAGGCTTCTCGACGGTCTCCCAGGGGCGCTCGAGCTCCGACACGACGGCTTTGAGATGGGCCTGCTTTCGCATCTCGTAGATTTGGCGCTTGCGACAGAGGCGGGCCTTAAGGAGCTGCTTGGCTTTCTTGGCCTGCATGCGCTTCCACTACCACTTGGATACGCCGTCGGGGAAGGTTCTGGGCCCGCCGCCCATTCGGATGAATGTGGGCTCTGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.62

Weight (kDa)

4.62

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04520 AT5G35680 AT5G35680 AT5G35680
fragaria_vesca	FvH4_6g30180 FvH4_6g41720
malus_domestica	MD17G1108800.v1.1 MD17G1109000.v1.1
prunus_persica	Prupe.3G206200_v2.0.a1 Prupe.3G206200_v2.0.a1
pyrus_communis	pycom09g04300
rosa_chinensis	RchiOBHm_Chr2g0136391 RchiOBHm_Chr2g0157471 RchiOBHm_Chr4g0392931
rosa_laevigata	RLG00000009781 RLG00000020990
rosa_multiflora	Rmu_sc0000195.1_g000029 Rmu_sc0001998.1_g000014 Rmu_sc0008339.1_g000029
rosa_roxburghii	Rroxscaffold_2G00092170 Rroxscaffold_2G00108330
rosa_rugosa	Rorug02G0196600 Rorug02G0329800 Rorug02G0461500 Rorug02G0461600
rosa_samantha	Rh1DG336900 Rh2AG381000 Rh2AG525700 Rh2BG387800 Rh2CG510400 Rh2DG404100 Rh3AG162500 Rh4BG040700 Rh6AG109100 Rh7AG495100
rosa_wichuraiana	Rw2G031160 Rw2G043540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	73
AciI	CCGC	3 cut(s)	236, 321, 324
AcoI	YGGCCR	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	169, 250
AluI	AGCT	2 cut(s)	169, 250
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	6 cut(s)	11, 88, 193, 238, 265, 317
ApaI	GGGCCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	250
AspLEI	GCGC	3 cut(s)	163, 223, 277
AspS9I	GGNCC	4 cut(s)	193, 238, 317, 318
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	321
BanII	GRGCYC	3 cut(s)	171, 321, 348
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	3 cut(s)	46, 196, 284
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	155
BfoI	RGCGCY	2 cut(s)	164, 224
BfrI	CTTAAG	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	251, 324
BlsI	GCNGC	2 cut(s)	252, 325
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	4 cut(s)	193, 238, 317, 318
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	154, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	154, 155
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	6 cut(s)	13, 90, 195, 240, 267, 319
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	6 cut(s)	13, 90, 195, 240, 267, 319
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	164
Bsp120I	GGGCCC	1 cut(s)	317
Bsp1286I	GDGCHC	3 cut(s)	171, 321, 348
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	3 cut(s)	236, 321, 324
BspANI	GGCC	6 cut(s)	13, 90, 195, 240, 267, 319
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	319
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	154, 155
BssMI	GATC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	43, 149
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	6 cut(s)	197, 225, 238, 269, 273, 321
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	2 cut(s)	164, 224
BstHHI	GCGC	3 cut(s)	163, 223, 277
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 233, 264
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	6 cut(s)	13, 90, 195, 240, 267, 319
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	6 cut(s)	197, 225, 238, 269, 273, 321
CfoI	GCGC	3 cut(s)	163, 223, 277
Cfr13I	GGNCC	4 cut(s)	193, 238, 317, 318
CseI	GACGC	1 cut(s)	62
CviAII	CATG	1 cut(s)	272
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	3 cut(s)	171, 321, 348
Eco31I	GGTCTC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	37
EcoT38I	GRGCYC	3 cut(s)	171, 321, 348
FaeI	CATG	1 cut(s)	275
FaiI	YATR	1 cut(s)	273
FatI	CATG	1 cut(s)	271
FauI	CCCGC	2 cut(s)	229, 328
Fnu4HI	GCNGC	2 cut(s)	251, 324
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	3 cut(s)	171, 321, 348
Fsp4HI	GCNGC	2 cut(s)	251, 324
GlaI	GCGC	3 cut(s)	162, 222, 276
GluI	GCNGC	2 cut(s)	251, 324
HaeII	RGCGCY	2 cut(s)	164, 224
HaeIII	GGCC	6 cut(s)	13, 90, 195, 240, 267, 319
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	3 cut(s)	163, 223, 277
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	3 cut(s)	161, 221, 275
HinP1I	GCGC	3 cut(s)	161, 221, 275
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	173, 334
Hpy188III	TCNNGA	2 cut(s)	77, 143
Hpy99I	CGWCG	3 cut(s)	149, 182, 305
HpyAV	CCTTC	2 cut(s)	3, 302
HpyCH4III	ACNGT	2 cut(s)	43, 149
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 233, 264
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	3 cut(s)	161, 221, 275
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	174, 247
LpnPI	CCDG	8 cut(s)	35, 62, 141, 168, 209, 281, 300, 334
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	214
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	3 cut(s)	171, 321, 348
MluCI	AATT	2 cut(s)	80, 129
MluI	ACGCGT	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	129, 226
MseI	TTAA	3 cut(s)	99, 243, 355
MslI	CAYNNNNRTG	1 cut(s)	333
MspCI	CTTAAG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	10, 233, 264
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	164
PasI	CCCWGGG	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	252, 325
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	319
PspOMI	GGGCCC	1 cut(s)	317
PspPI	GGNCC	4 cut(s)	193, 238, 317, 318
PspXI	VCTCGAGB	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	99, 243, 355
SatI	GCNGC	2 cut(s)	251, 324
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	4 cut(s)	193, 238, 317, 318
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	3 cut(s)	171, 321, 348
SetI	ASST	4 cut(s)	99, 171, 252, 313
SfaNI	GCATC	1 cut(s)	214
Sfr274I	CTCGAG	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	164, 242
SmoI	CTYRAG	2 cut(s)	164, 242
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	2 cut(s)	80, 129
SsiI	CCGC	3 cut(s)	236, 321, 324
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	43, 149
TaqI	TCGA	2 cut(s)	144, 165
TasI	AATT	2 cut(s)	80, 129
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	99, 243, 355
Tru9I	TTAA	3 cut(s)	99, 243, 355
TseI	GCWGC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	135
Vha464I	CTTAAG	1 cut(s)	242
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.