Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003208

Physical Location & Seq

Genomic Coordinates Forward (+)

14971091 .. 14971540

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCACAACCCCCTTGGGAAAAAACCTCGCCGACGACAGGTCCTCCATGGTCCGAAACAGCTCGGGCCTATCCCTCAAGGTCCACAAGTCAAACCCTCCCGGCCACTGGAACCGATCGGCCAAGACCTTAACCTGCTCATCAGCGCTGACGGAGAACAAAGTGGGAGGCTTCTCGACGGTCTCCCAGTGGCGCTCGAGCTCCGACACGGCGACTTCAGCGGCAGCAACGGACTGCCGCCGGGGTACAACCGAAGATACCCCCAATGCAATTTCAACTTCTCGTCGTCGCAAGACCCGTCATCGCAGTGGTCGCAGTTCGATTCTTCGGAGCCCTATCCTCCCCAATTGAAAAGGCCCAATTCTCGAAACGACGACTTTTTGATGAGGCCGTCGAATAAGGGGAAGAAGGTGGCGGTGGTGCTGGCGCCGATGACTTTGATGGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WAPL

Protein Analysis

149

Amino Acids

16.52

Weight (kDa)

9.77

Isoelectric Point (pI)

68.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04520 AT5G35680 AT5G35680 AT5G35680
fragaria_vesca	FvH4_6g30180 FvH4_6g41720
malus_domestica	MD17G1108800.v1.1 MD17G1109000.v1.1
prunus_persica	Prupe.3G206200_v2.0.a1 Prupe.3G206200_v2.0.a1
pyrus_communis	pycom09g04300
rosa_chinensis	RchiOBHm_Chr2g0136391 RchiOBHm_Chr2g0157471 RchiOBHm_Chr4g0392931
rosa_laevigata	RLG00000009781 RLG00000020990
rosa_multiflora	Rmu_sc0000195.1_g000029 Rmu_sc0001998.1_g000014 Rmu_sc0008339.1_g000029
rosa_roxburghii	Rroxscaffold_2G00092170 Rroxscaffold_2G00108330
rosa_rugosa	Rorug02G0196600 Rorug02G0329800 Rorug02G0461500 Rorug02G0461600
rosa_samantha	Rh1DG336900 Rh2AG381000 Rh2AG525700 Rh2BG387800 Rh2CG510400 Rh2DG404100 Rh3AG162500 Rh4BG040700 Rh6AG109100 Rh7AG495100
rosa_wichuraiana	Rw2G031160 Rw2G043540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	424
AciI	CCGC	3 cut(s)	219, 236, 413
AcoI	YGGCCR	2 cut(s)	101, 118
AcuI	CTGAAG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	1 cut(s)	245
AfeI	AGCGCT	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	37, 106
AgsI	TTSAA	2 cut(s)	274, 349
AhdI	GACNNNNNGTC	1 cut(s)	38
AluBI	AGCT	2 cut(s)	61, 199
AluI	AGCT	2 cut(s)	61, 199
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	185
Ama87I	CYCGRG	2 cut(s)	62, 194
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	5 cut(s)	65, 101, 118, 353, 386
ApeKI	GCWGC	1 cut(s)	222
AspLEI	GCGC	3 cut(s)	146, 193, 427
AspS9I	GGNCC	5 cut(s)	40, 50, 65, 80, 354
AsuC2I	CCSGG	2 cut(s)	100, 240
AvaI	CYCGRG	2 cut(s)	62, 194
AvaII	GGWCC	3 cut(s)	40, 50, 80
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	2 cut(s)	201, 333
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	2 cut(s)	223, 373
BcnI	CCSGG	2 cut(s)	100, 240
BcoDI	GTCTC	1 cut(s)	185
BfoI	RGCGCY	3 cut(s)	147, 194, 428
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	3 cut(s)	220, 223, 236
BlsI	GCNGC	3 cut(s)	221, 224, 237
Bme1390I	CCNGG	2 cut(s)	100, 240
Bme18I	GGWCC	3 cut(s)	40, 50, 80
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmeT110I	CYCGRG	2 cut(s)	62, 194
BmgT120I	GGNCC	5 cut(s)	40, 50, 65, 80, 354
BmiI	GGNNCC	3 cut(s)	111, 330, 426
BmrFI	CCNGG	2 cut(s)	100, 240
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	100, 240
BsaHI	GRCGYC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	13, 46, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 106
Bse1I	ACTGG	2 cut(s)	111, 185
BseDI	CCNNGG	3 cut(s)	13, 46, 239
BseLI	CCNNNNNNNGG	2 cut(s)	37, 106
BseNI	ACTGG	2 cut(s)	111, 185
BseXI	GCAGC	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	5 cut(s)	67, 103, 120, 355, 388
BshNI	GGYRCC	1 cut(s)	424
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	2 cut(s)	62, 194
BsiSI	CCGG	2 cut(s)	100, 239
BslI	CCNNNNNNNGG	2 cut(s)	37, 106
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	5 cut(s)	67, 103, 120, 355, 388
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	2 cut(s)	62, 194
Bsp1286I	GDGCHC	2 cut(s)	201, 333
Bsp143I	GATC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	3 cut(s)	219, 236, 413
BspANI	GGCC	5 cut(s)	67, 103, 120, 355, 388
BspLI	GGNNCC	3 cut(s)	111, 330, 426
BspMI	ACCTGC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	111, 185
BssECI	CCNNGG	3 cut(s)	13, 46, 239
BssMI	GATC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	2 cut(s)	13, 46
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	46
BstH2I	RGCGCY	3 cut(s)	147, 194, 428
BstHHI	GCGC	3 cut(s)	146, 193, 427
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 310
BstSCI	CCNGG	2 cut(s)	98, 238
BstV1I	GCAGC	1 cut(s)	234
BsuRI	GGCC	5 cut(s)	67, 103, 120, 355, 388
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	285
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	3 cut(s)	104, 192, 311
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	3 cut(s)	146, 193, 427
Cfr13I	GGNCC	5 cut(s)	40, 50, 65, 80, 354
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	9 cut(s)	61, 67, 103, 120, 169, 199, 331, 355, 388
CviKI_1	RGCY	9 cut(s)	61, 67, 103, 120, 169, 199, 331, 355, 388
CviQI	GTAC	1 cut(s)	244
DinI	GGCGCC	1 cut(s)	426
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DriI	GACNNNNNGTC	1 cut(s)	38
EaeI	YGGCCR	2 cut(s)	101, 118
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	13, 46
Eco24I	GRGCYC	2 cut(s)	201, 333
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	3 cut(s)	40, 50, 80
Eco47III	AGCGCT	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	199
Eco88I	CYCGRG	2 cut(s)	62, 194
EcoICRI	GAGCTC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	13, 46
EcoT38I	GRGCYC	2 cut(s)	201, 333
EgeI	GGCGCC	1 cut(s)	426
EheI	GGCGCC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	13, 46
FaeI	CATG	1 cut(s)	50
FaiI	YATR	2 cut(s)	48, 448
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	220, 223, 236
FriOI	GRGCYC	2 cut(s)	201, 333
Fsp4HI	GCNGC	3 cut(s)	220, 223, 236
GlaI	GCGC	3 cut(s)	145, 192, 426
GluI	GCNGC	3 cut(s)	220, 223, 236
HaeII	RGCGCY	3 cut(s)	147, 194, 428
HaeIII	GGCC	5 cut(s)	67, 103, 120, 355, 388
HapII	CCGG	2 cut(s)	100, 239
HhaI	GCGC	3 cut(s)	146, 193, 427
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	3 cut(s)	144, 191, 425
HinP1I	GCGC	3 cut(s)	144, 191, 425
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	2 cut(s)	100, 239
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	54, 203, 328
Hpy188III	TCNNGA	2 cut(s)	173, 363
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	6 cut(s)	36, 179, 286, 289, 374, 394
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	4, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 310
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	3 cut(s)	144, 191, 425
KasI	GGCGCC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	2 cut(s)	204, 328
LpnPI	CCDG	7 cut(s)	23, 92, 113, 146, 198, 252, 407
Lsp1109I	GCAGC	1 cut(s)	234
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	3 cut(s)	264, 315, 415
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	201, 333
MluCI	AATT	3 cut(s)	268, 344, 358
Mly113I	GGCGCC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	8 cut(s)	36, 53, 84, 106, 159, 348, 378, 436
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	2 cut(s)	100, 239
MspR9I	CCNGG	2 cut(s)	100, 240
MunI	CAATTG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	216, 310
NarI	GGCGCC	1 cut(s)	425
NciI	CCSGG	2 cut(s)	100, 240
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	3 cut(s)	111, 330, 426
PaeR7I	CTCGAG	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	221, 224, 237
Ple19I	CGATCG	1 cut(s)	117
PluTI	GGCGCC	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	40
PspN4I	GGNNCC	3 cut(s)	111, 330, 426
PspPI	GGNCC	5 cut(s)	40, 50, 65, 80, 354
PspPPI	RGGWCCY	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	220, 223, 236
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	5 cut(s)	40, 50, 65, 80, 354
ScrFI	CCNGG	2 cut(s)	100, 240
SduI	GDGCHC	2 cut(s)	201, 333
SetI	ASST	8 cut(s)	28, 42, 63, 82, 129, 135, 201, 411
SfoI	GGCGCC	1 cut(s)	426
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	40, 50, 80
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	304
SmlI	CTYRAG	2 cut(s)	75, 194
SmoI	CTYRAG	2 cut(s)	75, 194
Sse9I	AATT	3 cut(s)	268, 344, 358
SsiI	CCGC	3 cut(s)	219, 236, 413
SspDI	GGCGCC	1 cut(s)	424
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	98, 238
StyI	CCWWGG	2 cut(s)	13, 46
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	5 cut(s)	174, 195, 318, 364, 392
TasI	AATT	3 cut(s)	268, 344, 358
TauI	GCSGC	2 cut(s)	222, 238
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	3 cut(s)	111, 192, 311
TseI	GCWGC	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	165, 243
TspRI	CASTG	3 cut(s)	111, 192, 311
VpaK11BI	GGWCC	3 cut(s)	40, 50, 80
XhoI	CTCGAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.