Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008339.1

Orthogroup ID

OG0003208

Physical Location & Seq

Genomic Coordinates Reverse (-)

114705 .. 115808

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008339.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgctctctctctctctctctcccccaattcctcagccccaatcctcctatacggcctcacactatgcacaaatcccttgggaaaaaacctcgtcgacggcagatcctccatggcctgaaatagctccggcccatccctctcagtccacaagtcaaaccctcccgctcggacacggaggctttgagctcggccctctttctcatctcgtagatttggccctcgcggcagaggcgggcctggaggagctgcttggctttcttggcctacatgcgcttccactaccacttggatacgcctccggggaaggttctgggcccgccgcccattcggatgaatgtgggctttgggctggtcatatcattcttgttggccttcgtgactatcaggatgacaaagctgatttgattctcaagtacatgtctgatgaggctaggctgctgaaggcttatggtgagcttccagagaatacacatcttaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

eIF-1a

Protein Analysis

160

Amino Acids

17.04

Weight (kDa)

4.82

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04520 AT5G35680 AT5G35680 AT5G35680
fragaria_vesca	FvH4_6g30180 FvH4_6g41720
malus_domestica	MD17G1108800.v1.1 MD17G1109000.v1.1
prunus_persica	Prupe.3G206200_v2.0.a1 Prupe.3G206200_v2.0.a1
pyrus_communis	pycom09g04300
rosa_chinensis	RchiOBHm_Chr2g0136391 RchiOBHm_Chr2g0157471 RchiOBHm_Chr4g0392931
rosa_laevigata	RLG00000009781 RLG00000020990
rosa_multiflora	Rmu_sc0000195.1_g000029 Rmu_sc0001998.1_g000014 Rmu_sc0008339.1_g000029
rosa_roxburghii	Rroxscaffold_2G00092170 Rroxscaffold_2G00108330
rosa_rugosa	Rorug02G0196600 Rorug02G0329800 Rorug02G0461500 Rorug02G0461600
rosa_samantha	Rh1DG336900 Rh2AG381000 Rh2AG525700 Rh2BG387800 Rh2CG510400 Rh2DG404100 Rh3AG162500 Rh4BG040700 Rh6AG109100 Rh7AG495100
rosa_wichuraiana	Rw2G031160 Rw2G043540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	1 cut(s)	224
AciI	CCGC	5 cut(s)	164, 224, 233, 318, 321
AclWI	GGATC	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	5 cut(s)	125, 187, 247, 398, 457
AluI	AGCT	5 cut(s)	125, 187, 247, 398, 457
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	9 cut(s)	54, 113, 129, 190, 216, 235, 262, 314, 370
ApaI	GGGCCC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	247, 436
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	6 cut(s)	130, 191, 217, 235, 314, 315
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	318
BanII	GRGCYC	2 cut(s)	189, 318
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	234, 423
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	2 cut(s)	69, 114
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	301
BfaI	CTAG	1 cut(s)	432
BfuI	GTATCC	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	4 cut(s)	225, 248, 321, 437
BlsI	GCNGC	4 cut(s)	226, 249, 322, 438
Bme1390I	CCNGG	2 cut(s)	239, 301
BmgT120I	GGNCC	6 cut(s)	130, 191, 217, 235, 314, 315
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	239, 301
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	77, 110, 300
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	3 cut(s)	77, 110, 300
BseGI	GGATG	3 cut(s)	133, 337, 394
BseMII	CTCAG	2 cut(s)	47, 155
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	234, 423
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	9 cut(s)	56, 115, 131, 192, 218, 237, 264, 316, 372
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	128, 300
BsnI	GGCC	9 cut(s)	56, 115, 131, 192, 218, 237, 264, 316, 372
Bsp120I	GGGCCC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	189, 318
Bsp143I	GATC	1 cut(s)	103
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	5 cut(s)	164, 224, 233, 318, 321
BspANI	GGCC	9 cut(s)	56, 115, 131, 192, 218, 237, 264, 316, 372
BspCNI	CTCAG	2 cut(s)	46, 154
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	77, 110, 300
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	2 cut(s)	77, 110
Bst2UI	CCWGG	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	235, 318
BstDEI	CTNAG	2 cut(s)	33, 141
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	3 cut(s)	133, 337, 394
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 230, 261
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	2 cut(s)	272, 421
BstSCI	CCNGG	2 cut(s)	237, 299
BstSLI	GKGCMC	1 cut(s)	318
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	234, 423
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	9 cut(s)	56, 115, 131, 192, 218, 237, 264, 316, 372
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	3 cut(s)	133, 337, 394
Cac8I	GCNNGC	2 cut(s)	235, 318
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	6 cut(s)	130, 191, 217, 235, 314, 315
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	3 cut(s)	111, 269, 418
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	33, 141
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	77, 110
Eco24I	GRGCYC	2 cut(s)	189, 318
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	77, 110
EcoT38I	GRGCYC	2 cut(s)	189, 318
ErhI	CCWWGG	2 cut(s)	77, 110
FaeI	CATG	3 cut(s)	114, 272, 421
FaiI	YATR	7 cut(s)	51, 66, 112, 270, 357, 419, 450
FatI	CATG	3 cut(s)	110, 268, 417
FauI	CCCGC	3 cut(s)	171, 226, 325
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	4 cut(s)	225, 248, 321, 437
FokI	GGATG	3 cut(s)	120, 344, 401
FriOI	GRGCYC	2 cut(s)	189, 318
Fsp4HI	GCNGC	4 cut(s)	225, 248, 321, 437
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	4 cut(s)	225, 248, 321, 437
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	9 cut(s)	56, 115, 131, 192, 218, 237, 264, 316, 372
HapII	CCGG	2 cut(s)	128, 300
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	114, 272, 421
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	2 cut(s)	128, 300
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	96, 147
Hpy188I	TCNGA	3 cut(s)	170, 331, 424
Hpy188III	TCNNGA	3 cut(s)	377, 386, 461
Hpy8I	GTNNAC	2 cut(s)	96, 147
Hpy99I	CGWCG	2 cut(s)	97, 100
HpyAV	CCTTC	3 cut(s)	299, 383, 436
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 230, 261
HpyF3I	CTNAG	2 cut(s)	33, 141
Hsp92II	CATG	3 cut(s)	114, 272, 421
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	130, 244
LpnPI	CCDG	9 cut(s)	129, 141, 224, 251, 297, 313, 336, 371, 474
Lsp1109I	GCAGC	2 cut(s)	234, 423
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	105
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	1 cut(s)	103
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	189, 318
MluCI	AATT	1 cut(s)	27
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	2 cut(s)	128, 300
MspR9I	CCNGG	2 cut(s)	239, 301
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	224, 230, 261
NciI	CCSGG	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	3 cut(s)	114, 272, 421
NlaIV	GGNNCC	1 cut(s)	316
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	2 cut(s)	272, 421
PciI	ACATGT	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	4 cut(s)	226, 249, 322, 438
PscI	ACATGT	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	316
PspOMI	GGGCCC	1 cut(s)	314
PspPI	GGNCC	6 cut(s)	130, 191, 217, 235, 314, 315
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	189
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	4 cut(s)	225, 248, 321, 437
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	6 cut(s)	130, 191, 217, 235, 314, 315
ScrFI	CCNGG	2 cut(s)	239, 301
SduI	GDGCHC	2 cut(s)	189, 318
SetI	ASST	7 cut(s)	92, 127, 189, 249, 310, 400, 459
SgrDI	CGTCGACG	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	5 cut(s)	164, 224, 233, 318, 321
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	237, 299
StyI	CCWWGG	2 cut(s)	77, 110
TaqI	TCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	227, 323
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	2 cut(s)	247, 436
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	348
TspGWI	ACGGA	1 cut(s)	189
XceI	RCATGY	2 cut(s)	272, 421
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.