Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003208

Physical Location & Seq

Genomic Coordinates Reverse (-)

69539185 .. 69539511

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG495100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATGACTATCTCAGCATCGACCCGTTTAGAATTCTCTCTCCCAAGACACCCCCAATTCAATTTCAATTTCTCTTCATCACAAAACTCGTCCTCGCAGTGGTCGCAGTTTGATTCAGAGCCCTATTCGTTGAAGAGGCCCAATTCGCAAAACGCCGATGTTCGGAGATCGAAGAAGGCCAAGAAGACTAGTAAAAGCCGCGGCGGTGCTGGCGACGACGACGTTGATGGAGGCACAGGAGATCGAGGAGATGATGGAGCAAGTCGACGGGGTCAATTTTGCTCTGGATGGGCTTATTTGAACAGTCAACCGGTTCGGATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WAPL

Protein Analysis

108

Amino Acids

11.98

Weight (kDa)

10.0

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04520 AT5G35680 AT5G35680 AT5G35680
fragaria_vesca	FvH4_6g30180 FvH4_6g41720
malus_domestica	MD17G1108800.v1.1 MD17G1109000.v1.1
prunus_persica	Prupe.3G206200_v2.0.a1 Prupe.3G206200_v2.0.a1
pyrus_communis	pycom09g04300
rosa_chinensis	RchiOBHm_Chr2g0136391 RchiOBHm_Chr2g0157471 RchiOBHm_Chr4g0392931
rosa_laevigata	RLG00000009781 RLG00000020990
rosa_multiflora	Rmu_sc0000195.1_g000029 Rmu_sc0001998.1_g000014 Rmu_sc0008339.1_g000029
rosa_roxburghii	Rroxscaffold_2G00092170 Rroxscaffold_2G00108330
rosa_rugosa	Rorug02G0196600 Rorug02G0329800 Rorug02G0461500 Rorug02G0461600
rosa_samantha	Rh1DG336900 Rh2AG381000 Rh2AG525700 Rh2BG387800 Rh2CG510400 Rh2DG404100 Rh3AG162500 Rh4BG040700 Rh6AG109100 Rh7AG495100
rosa_wichuraiana	Rw2G031160 Rw2G043540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	1 cut(s)	201
AciI	CCGC	3 cut(s)	199, 201, 204
AcsI	RAATTY	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	99, 162
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	4 cut(s)	61, 67, 133, 301
AhlI	ACTAGT	1 cut(s)	188
AoxI	GGCC	2 cut(s)	137, 177
ApoI	RAATTY	1 cut(s)	32
AsiGI	ACCGGT	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	191
BccI	CCATC	3 cut(s)	221, 248, 282
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	199, 202
BlsI	GCNGC	2 cut(s)	200, 203
BmgT120I	GGNCC	1 cut(s)	138
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 162
Bse118I	RCCGGY	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	99, 162
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	139, 179
BshTI	ACCGGT	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	99, 162
BsnI	GGCC	2 cut(s)	139, 179
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	167, 241
BspACI	CCGC	3 cut(s)	199, 201, 204
BspANI	GGCC	2 cut(s)	139, 179
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	167, 241
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	79, 128
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	293
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	170, 244
BstMBI	GATC	2 cut(s)	167, 241
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 145, 210
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	139, 179
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	138
Cfr42I	CCGCGG	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	310
CviJI	RGCY	5 cut(s)	121, 139, 179, 198, 293
CviKI_1	RGCY	5 cut(s)	121, 139, 179, 198, 293
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	2 cut(s)	169, 243
DpnII	GATC	2 cut(s)	167, 241
Eam1104I	CTCTTC	2 cut(s)	79, 128
EarI	CTCTTC	2 cut(s)	79, 128
Eco24I	GRGCYC	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	199, 202
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	199, 202
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	2 cut(s)	199, 202
HaeIII	GGCC	2 cut(s)	139, 179
HapII	CCGG	1 cut(s)	311
HincII	GTYRAC	2 cut(s)	266, 308
HindII	GTYRAC	2 cut(s)	266, 308
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	266, 308
Hpy188I	TCNGA	3 cut(s)	118, 165, 318
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	2 cut(s)	266, 308
Hpy99I	CGWCG	4 cut(s)	218, 221, 224, 270
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 145, 210
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	222
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	167, 241
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	3 cut(s)	195, 222, 270
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	222
MalI	GATC	2 cut(s)	169, 243
MboI	GATC	2 cut(s)	167, 241
MboII	GAAGA	4 cut(s)	66, 145, 184, 196
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	6 cut(s)	32, 56, 61, 67, 142, 275
MnlI	CCTC	4 cut(s)	103, 129, 224, 239
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	103, 145, 210
NdeII	GATC	2 cut(s)	167, 241
PfeI	GAWTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	270
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	200, 203
PspPI	GGNCC	1 cut(s)	138
PsyI	GACNNNGTC	1 cut(s)	270
SacII	CCGCGG	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	264
SatI	GCNGC	2 cut(s)	199, 202
Sau3AI	GATC	2 cut(s)	167, 241
Sau96I	GGNCC	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	26
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	6 cut(s)	32, 56, 61, 67, 142, 275
SsiI	CCGC	3 cut(s)	199, 201, 204
SspMI	CTAG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	20, 170, 244, 265
TasI	AATT	6 cut(s)	32, 56, 61, 67, 142, 275
TauI	GCSGC	2 cut(s)	201, 204
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	104
Tth111I	GACNNNGTC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.