Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7980006.1

Orthogroup ID

OG0001996

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 513

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7980006.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

gctgccaggcctaaccctcaaggctcctatcactatggtgccatcaacatcacccgcaccatcaagctcgtcaactctgccagcaaggttgatggcaagctgcgctatgccataaatggagtctcccacattgatactgaaaccccactcaagtatgcccagtactttggagttgcggacaaggtcttcaagtacgatatcatcaaggacgagccctcagctgaagcagaagacaagatcaccttagcacctaatgttgtcaaccaaacctaccgggactttgtggagattatctttgagaaccaccagaagagcattcagtcatggcatctggatggattcgctttctttcccgctgccattgagtttgggaggtgggcaccagagaagagaaggaactacaaccttcttgacgccataagccgacacaccgtccacgtgtatcccggctcatgggccgccattatgttgacattcgacaacgctggaatgtggaacttgaggtcagcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

171

Amino Acids

19.45

Weight (kDa)

8.14

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55560 AT1G55570 AT3G13390 AT3G13400 AT3G13400
fragaria_vesca	FvH4_3g46080 FvH4_6g20700
malus_domestica	MD03G1000200.v1.1 MD03G1000500.v1.1 MD11G1000300.v1.1 MD11G1000400.v1.1
prunus_persica	Prupe.6G000400_v2.0.a1 Prupe.6G000500_v2.0.a1
pyrus_communis	pycom03g00050 pycom11g00060
rosa_chinensis	RchiOBHm_Chr3g0476601 RchiOBHm_Chr3g0476621 RchiOBHm_Chr5g0084141
rosa_laevigata	RLG00000001981 RLG00000001982 RLG00000023759 RLG00000037086
rosa_multiflora	Rmu_co7980006.1_g000001 Rmu_sc0008241.1_g000008 Rmu_sc0008241.1_g000011 Rmu_sc0014688.1_g000001 Rmu_sc0035447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000500 Rroxscaffold_6G00405150 Rroxscaffold_6G00405170
rosa_rugosa	Rorug03G0155600 Rorug03G0155900 Rorug05G0489500
rosa_samantha	Rh3AG206200 Rh3CG232600 Rh3DG232400 Rh3DG232600 Rh5AG542100 Rh5CG589700 Rh5DG576100 Rh7DG309900
rosa_wichuraiana	Rw3G018780 Rw3G018790 Rw5G050430 Rw7G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	38, 379
AciI	CCGC	4 cut(s)	55, 176, 354, 459
AcuI	CTGAAG	1 cut(s)	243
AcvI	CACGTG	1 cut(s)	439
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	2 cut(s)	164, 194
AfiI	CCNNNNNNNGG	1 cut(s)	453
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	1 cut(s)	190
AhdI	GACNNNNNGTC	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	5
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	67, 100, 221
AluI	AGCT	3 cut(s)	67, 100, 221
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	2 cut(s)	8, 456
ApeKI	GCWGC	3 cut(s)	2, 100, 356
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	2 cut(s)	275, 447
AsuHPI	GGTGA	2 cut(s)	43, 232
BaeGI	GKGCMC	1 cut(s)	382
BanI	GGYRCC	2 cut(s)	38, 379
BanII	GRGCYC	1 cut(s)	216
BbrPI	CACGTG	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	178, 237
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	87, 343
BccI	CCATC	4 cut(s)	50, 68, 86, 329
BciT130I	CCWGG	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	453
BcnI	CCSGG	2 cut(s)	275, 447
BcoDI	GTCTC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	453
BisI	GCNGC	4 cut(s)	3, 101, 357, 459
BlsI	GCNGC	4 cut(s)	4, 102, 358, 460
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	3 cut(s)	7, 275, 447
BmeRI	GACNNNNNGTC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	3 cut(s)	25, 40, 381
BmrFI	CCNGG	3 cut(s)	7, 275, 447
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	178, 237
Bpu10I	CCTNAGC	2 cut(s)	217, 244
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	2 cut(s)	275, 447
BsaAI	YACGTR	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	87, 343
BshFI	GGCC	2 cut(s)	10, 458
BshNI	GGYRCC	2 cut(s)	38, 379
BsiSI	CCGG	2 cut(s)	274, 447
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	10, 458
Bsp1286I	GDGCHC	2 cut(s)	216, 382
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	4 cut(s)	55, 176, 354, 459
BspANI	GGCC	2 cut(s)	10, 458
BspCNI	CTCAG	1 cut(s)	230
BspLI	GGNNCC	3 cut(s)	25, 40, 381
BspQI	GCTCTTC	1 cut(s)	305
BspT107I	GGYRCC	2 cut(s)	38, 379
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	305, 383
BstACI	GRCGYC	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	82, 98
BstDEI	CTNAG	2 cut(s)	217, 244
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	3 cut(s)	5, 273, 445
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	87, 343
BstV2I	GAAGAC	2 cut(s)	178, 237
BstXI	CCANNNNNNTGG	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	10, 458
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	82, 98
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	456
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	163, 193
CviAII	CATG	2 cut(s)	324, 453
CviJI	RGCY	9 cut(s)	10, 24, 67, 100, 214, 221, 423, 450, 458
CviKI_1	RGCY	9 cut(s)	10, 24, 67, 100, 214, 221, 423, 450, 458
CviQI	GTAC	2 cut(s)	163, 193
DdeI	CTNAG	2 cut(s)	217, 244
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
DriI	GACNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	2 cut(s)	305, 383
Eam1105I	GACNNNNNGTC	1 cut(s)	431
EarI	CTCTTC	2 cut(s)	305, 383
Eco147I	AGGCCT	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	243
Eco72I	CACGTG	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	5
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	2 cut(s)	327, 456
FaiI	YATR	8 cut(s)	36, 108, 113, 156, 325, 419, 454, 467
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	323, 452
FauI	CCCGC	2 cut(s)	62, 361
Fnu4HI	GCNGC	4 cut(s)	3, 101, 357, 459
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	3, 101, 357, 459
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	3, 101, 357, 459
HaeIII	GGCC	2 cut(s)	10, 458
HapII	CCGG	2 cut(s)	274, 447
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	2 cut(s)	327, 456
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	3 cut(s)	73, 262, 471
HindII	GTYRAC	3 cut(s)	73, 262, 471
HinfI	GANTC	2 cut(s)	120, 339
HpaII	CCGG	2 cut(s)	274, 447
HphI	GGTGA	2 cut(s)	43, 232
Hpy166II	GTNNAC	4 cut(s)	73, 262, 436, 471
Hpy188III	TCNNGA	2 cut(s)	332, 410
Hpy8I	GTNNAC	4 cut(s)	73, 262, 436, 471
HpyAV	CCTTC	2 cut(s)	387, 416
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	217, 244
HpySE526I	ACGT	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	327, 456
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	237
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	9 cut(s)	19, 94, 173, 287, 317, 320, 396, 460, 471
Lsp1109I	GCAGC	2 cut(s)	87, 343
LweI	GCATC	1 cut(s)	337
MaeII	ACGT	1 cut(s)	438
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	4 cut(s)	178, 242, 322, 400
MhlI	GDGCHC	2 cut(s)	216, 382
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	4 cut(s)	27, 226, 366, 495
MslI	CAYNNNNRTG	2 cut(s)	36, 333
MspA1I	CMGCKG	2 cut(s)	221, 356
MspI	CCGG	2 cut(s)	274, 447
MspR9I	CCNGG	3 cut(s)	7, 275, 447
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	102
NciI	CCSGG	2 cut(s)	275, 447
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	327, 456
NlaIV	GGNNCC	3 cut(s)	25, 40, 381
OliI	CACNNNNGTG	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	305
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	4, 102, 358, 460
PleI	GAGTC	1 cut(s)	128
PmaCI	CACGTG	1 cut(s)	439
PmlI	CACGTG	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	5
PspCI	CACGTG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	25, 40, 381
PspPI	GGNCC	1 cut(s)	456
PsyI	GACNNNGTC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	164, 194
RsaNI	GTAC	2 cut(s)	163, 193
RseI	CAYNNNNRTG	2 cut(s)	36, 333
SapI	GCTCTTC	1 cut(s)	305
SatI	GCNGC	4 cut(s)	3, 101, 357, 459
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	456
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	7, 275, 447
SduI	GDGCHC	2 cut(s)	216, 382
SfaNI	GCATC	1 cut(s)	337
SmiMI	CAYNNNNRTG	2 cut(s)	36, 333
SmlI	CTYRAG	3 cut(s)	18, 149, 499
SmoI	CTYRAG	3 cut(s)	18, 149, 499
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	4 cut(s)	55, 176, 354, 459
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	3 cut(s)	5, 273, 445
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	1 cut(s)	477
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	339
TseI	GCWGC	3 cut(s)	2, 100, 356
Tth111I	GACNNNGTC	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.