Rh7DG309900

L-ascorbate oxidase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001996
Physical Location & Seq
Forward (+)
36284865 .. 36286153
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG309900.1

Sequence Viewer

Length: 801 bp
ATGGAATGGAATCCAACAGAAGAAGAATTCATGGCAAGATGGAACACCAGGGACTATGTGCCCTATTCCTCCTGGTCAGAACTACACATACCACTTCCAAGTGAAGGACCAGATTGGAAGCTATTTCTACTATCCCATCACTGCCATGCACAGAGCAGGTGGTGCCTTGCCAGTGCTGCCAGGCCTAACCCTCAAGGCTCCTATCACTATGGTGCCATCAACATCACCCGCACCATCAAGCTCGTCAACTCTGCCCGCAAGGTTGATGGCAAGCTGCGCTATGCCATAAATGGAGTCTCCCACATTGACACTGAAACCCCACTCAAGTATGCCCAGTACTTTGGAGGTGCGGACAAGGTCTTCAAGTACAATATCATCAAGGACGAGCCCTCAGCTGAAGCAGAGGACAAGATCACCTTAGCACCTAATGTTGTCAACCAAACCTACCGGGACTTTGTGGCGATTATCTTTGAGAACCACGAGAAGAGCATGCAGTCTTGGCATCTGGATGGATACGCTTTCTTTCCCGCTGCCATCGAGTTTGGGAGGTGGGCACCAGAGAAAAGAAGGAACCACAACCTTCTTGACGCCATAAGCCGACACACCGTCCACGTGTATCCCGGCTCATGGGCCGCCATTATGTTGACATTCAACAACGCTGGAATGTGGAACTTGAGGTCAGCACAGCCGGAGAGGGCGTACCTAGAACAACAGCTCTACGAGAGTGTTGAAAATGTCGCACGCTCTCTCAGGGACGAGTACATGCTGCTAGACCAGAAACCTCTCTGTGGCATCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

266

Amino Acids

30.76

Weight (kDa)

6.41

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 127 - 243 4.3e-23 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 3 cut(s) 162, 212, 553
AciI CCGC 5 cut(s) 229, 256, 350, 528, 633
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 417
AcvI CACGTG 1 cut(s) 613
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 4 cut(s) 338, 368, 701, 761
AfiI CCNNNNNNNGG 3 cut(s) 104, 627, 788
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 3 cut(s) 364, 652, 731
AhdI GACNNNNNGTC 1 cut(s) 605
AjnI CCWGG 3 cut(s) 47, 71, 179
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 5 cut(s) 121, 241, 274, 395, 715
AluI AGCT 5 cut(s) 121, 241, 274, 395, 715
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 2 cut(s) 182, 630
ApeKI GCWGC 4 cut(s) 176, 274, 530, 766
ApoI RAATTY 1 cut(s) 26
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 107, 630
AsuC2I CCSGG 2 cut(s) 449, 621
AsuHPI GGTGA 2 cut(s) 217, 406
AvaII GGWCC 1 cut(s) 107
BaeGI GKGCMC 2 cut(s) 63, 556
BanI GGYRCC 3 cut(s) 162, 212, 553
BanII GRGCYC 1 cut(s) 390
BauI CACGAG 1 cut(s) 479
BbrPI CACGTG 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 391
BbvI GCAGC 4 cut(s) 163, 261, 517, 753
BccI CCATC 7 cut(s) 33, 144, 224, 242, 260, 503, 542
BciT130I CCWGG 3 cut(s) 49, 73, 181
BciVI GTATCC 2 cut(s) 506, 627
BcnI CCSGG 2 cut(s) 449, 621
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 3 cut(s) 704, 770, 799
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 2 cut(s) 506, 627
BisI GCNGC 5 cut(s) 177, 275, 531, 633, 767
BlsI GCNGC 5 cut(s) 178, 276, 532, 634, 768
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 5 cut(s) 49, 73, 181, 449, 621
Bme18I GGWCC 1 cut(s) 107
BmeRI GACNNNNNGTC 1 cut(s) 605
BmgT120I GGNCC 2 cut(s) 107, 630
BmiI GGNNCC 5 cut(s) 164, 199, 214, 555, 572
BmrFI CCNGG 5 cut(s) 49, 73, 181, 449, 621
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 352
Bpu10I CCTNAGC 2 cut(s) 391, 418
BpuEI CTTGAG 3 cut(s) 177, 308, 694
BpuMI CCSGG 2 cut(s) 449, 621
BsaAI YACGTR 1 cut(s) 613
BsaHI GRCGYC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 627, 788
Bse1I ACTGG 2 cut(s) 171, 334
BseBI CCWGG 3 cut(s) 49, 73, 181
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 3 cut(s) 104, 627, 788
BseMII CTCAG 2 cut(s) 405, 763
BseNI ACTGG 2 cut(s) 171, 334
BseSI GKGCMC 2 cut(s) 63, 556
BseXI GCAGC 4 cut(s) 163, 261, 517, 753
BshFI GGCC 2 cut(s) 184, 632
BshNI GGYRCC 3 cut(s) 162, 212, 553
BsiSI CCGG 3 cut(s) 448, 621, 689
BslFI GGGAC 3 cut(s) 65, 464, 767
BslI CCNNNNNNNGG 3 cut(s) 104, 627, 788
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 3 cut(s) 65, 464, 767
BsnI GGCC 2 cut(s) 184, 632
Bsp1286I GDGCHC 3 cut(s) 63, 390, 556
Bsp143I GATC 1 cut(s) 411
BspACI CCGC 5 cut(s) 229, 256, 350, 528, 633
BspANI GGCC 2 cut(s) 184, 632
BspCNI CTCAG 2 cut(s) 404, 762
BspLI GGNNCC 5 cut(s) 164, 199, 214, 555, 572
BspMI ACCTGC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 479
BspT107I GGYRCC 3 cut(s) 162, 212, 553
BsrI ACTGG 2 cut(s) 171, 334
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 411
BssNI GRCGYC 1 cut(s) 588
BssSI CACGAG 1 cut(s) 479
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 3 cut(s) 49, 73, 181
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 1 cut(s) 588
BstAPI GCANNNNNTGC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 4 cut(s) 256, 272, 491, 742
BstDEI CTNAG 3 cut(s) 391, 418, 749
BstF5I GGATG 1 cut(s) 514
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 1 cut(s) 414
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 1 cut(s) 411
BstMWI GCNNNNNNNGC 4 cut(s) 162, 176, 276, 499
BstNI CCWGG 3 cut(s) 49, 73, 181
BstNSI RCATGY 2 cut(s) 493, 766
BstSCI CCNGG 5 cut(s) 47, 71, 179, 447, 619
BstSLI GKGCMC 2 cut(s) 63, 556
BstV1I GCAGC 4 cut(s) 163, 261, 517, 753
BstV2I GAAGAC 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 341
BsuI GTATCC 2 cut(s) 506, 627
BsuRI GGCC 2 cut(s) 184, 632
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 3 cut(s) 139, 178, 309
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 256, 272, 491, 742
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 107, 630
CseI GACGC 1 cut(s) 596
Csp6I GTAC 4 cut(s) 337, 367, 700, 760
CviAII CATG 5 cut(s) 31, 146, 490, 627, 763
CviQI GTAC 4 cut(s) 337, 367, 700, 760
DdeI CTNAG 3 cut(s) 391, 418, 749
DpnI GATC 1 cut(s) 413
DpnII GATC 1 cut(s) 411
DriI GACNNNNNGTC 1 cut(s) 605
Eam1104I CTCTTC 1 cut(s) 479
Eam1105I GACNNNNNGTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 479
Eco147I AGGCCT 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 417
Eco72I CACGTG 1 cut(s) 613
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 3 cut(s) 47, 71, 179
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 5 cut(s) 34, 149, 493, 630, 766
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 3 cut(s) 65, 464, 767
FatI CATG 5 cut(s) 30, 145, 489, 626, 762
FauI CCCGC 3 cut(s) 236, 263, 535
Fnu4HI GCNGC 5 cut(s) 177, 275, 531, 633, 767
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 5 cut(s) 177, 275, 531, 633, 767
FspBI CTAG 3 cut(s) 704, 770, 799
GlaI GCGC 1 cut(s) 278
GluI GCNGC 5 cut(s) 177, 275, 531, 633, 767
HaeIII GGCC 2 cut(s) 184, 632
HapII CCGG 3 cut(s) 448, 621, 689
HgaI GACGC 1 cut(s) 596
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 588
Hin1II CATG 5 cut(s) 34, 149, 493, 630, 766
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 3 cut(s) 247, 436, 645
HindII GTYRAC 3 cut(s) 247, 436, 645
HinfI GANTC 2 cut(s) 10, 294
HpaII CCGG 3 cut(s) 448, 621, 689
HphI GGTGA 2 cut(s) 217, 406
Hpy166II GTNNAC 4 cut(s) 247, 436, 610, 645
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 506, 584
Hpy8I GTNNAC 4 cut(s) 247, 436, 610, 645
HpyAV CCTTC 3 cut(s) 98, 561, 590
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 2 cut(s) 149, 493
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 176, 276, 499
HpyF3I CTNAG 3 cut(s) 391, 418, 749
HpySE526I ACGT 1 cut(s) 612
Hsp92I GRCGYC 1 cut(s) 588
Hsp92II CATG 5 cut(s) 34, 149, 493, 630, 766
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 1 cut(s) 411
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 4 cut(s) 163, 261, 517, 753
LweI GCATC 1 cut(s) 511
MaeI CTAG 3 cut(s) 704, 770, 799
MaeII ACGT 1 cut(s) 612
MalI GATC 1 cut(s) 413
MboI GATC 1 cut(s) 411
MboII GAAGA 4 cut(s) 32, 35, 352, 496
MhlI GDGCHC 3 cut(s) 63, 390, 556
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 9 cut(s) 79, 201, 338, 397, 400, 540, 669, 687, 792
MslI CAYNNNNRTG 3 cut(s) 144, 210, 507
MspA1I CMGCKG 2 cut(s) 395, 530
MspI CCGG 3 cut(s) 448, 621, 689
MspR9I CCNGG 5 cut(s) 49, 73, 181, 449, 621
MvaI CCWGG 3 cut(s) 49, 73, 181
MwoI GCNNNNNNNGC 4 cut(s) 162, 176, 276, 499
NciI CCSGG 2 cut(s) 449, 621
NdeII GATC 1 cut(s) 411
NlaIII CATG 5 cut(s) 34, 149, 493, 630, 766
NlaIV GGNNCC 5 cut(s) 164, 199, 214, 555, 572
NspI RCATGY 2 cut(s) 493, 766
OliI CACNNNNGTG 1 cut(s) 210
PaeI GCATGC 1 cut(s) 493
PaqCI CACCTGC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 5 cut(s) 178, 276, 532, 634, 768
PleI GAGTC 1 cut(s) 302
PmaCI CACGTG 1 cut(s) 613
PmlI CACGTG 1 cut(s) 613
PpsI GAGTC 1 cut(s) 302
Ppu21I YACGTR 1 cut(s) 613
Psp6I CCWGG 3 cut(s) 47, 71, 179
PspCI CACGTG 1 cut(s) 613
PspGI CCWGG 3 cut(s) 47, 71, 179
PspN4I GGNNCC 5 cut(s) 164, 199, 214, 555, 572
PspPI GGNCC 2 cut(s) 107, 630
PsrI GAACNNNNNNTAC 2 cut(s) 72, 104
PsyI GACNNNGTC 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 4 cut(s) 338, 368, 701, 761
RsaNI GTAC 4 cut(s) 337, 367, 700, 760
RseI CAYNNNNRTG 3 cut(s) 144, 210, 507
SapI GCTCTTC 1 cut(s) 479
SatI GCNGC 5 cut(s) 177, 275, 531, 633, 767
Sau3AI GATC 1 cut(s) 411
Sau96I GGNCC 2 cut(s) 107, 630
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 5 cut(s) 49, 73, 181, 449, 621
SduI GDGCHC 3 cut(s) 63, 390, 556
SfaNI GCATC 1 cut(s) 511
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 3 cut(s) 144, 210, 507
SmlI CTYRAG 3 cut(s) 192, 323, 673
SmoI CTYRAG 3 cut(s) 192, 323, 673
SphI GCATGC 1 cut(s) 493
Sse9I AATT 1 cut(s) 26
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 5 cut(s) 229, 256, 350, 528, 633
SspMI CTAG 3 cut(s) 704, 770, 799
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 5 cut(s) 47, 71, 179, 447, 619
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 1 cut(s) 615
TaqI TCGA 1 cut(s) 537
TasI AATT 1 cut(s) 26
TatI WGTACW 3 cut(s) 336, 366, 759
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 3 cut(s) 146, 178, 316
TseI GCWGC 4 cut(s) 176, 274, 530, 766
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 3 cut(s) 146, 178, 316
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 26
XceI RCATGY 2 cut(s) 493, 766
XspI CTAG 3 cut(s) 704, 770, 799
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.