Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001996

Physical Location & Seq

Genomic Coordinates Reverse (-)

83483669 .. 83486978

Gene Structure 3310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG589700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAATTGGTTGCATATATGCAGGAGTGGTATCCAGCAGAGGAAGAATTCATGGCAAGACGGAACACCTGGAACTATGTGCCCCATACCCGCGGGTAAGAACTTCACCTATCAGTTCCAGGTGAAGGATCAGATTGGCAGCTTTATATACTATCCAACAACTGCTATGCACAGGGCTGGCGGTGCATTCGGCGGTCTCCGCGTGAATAGTCGTCTACTGATCCCAGTTCCTTATGATACTCCGGAGGATGACTACACTGTCCTCATCGGGGACTGGTACACCAAAAGCCACAACGCTATCAAGAAACTACTTGACAGCGGTCGCAGTATGGCCAGGCCTGACGGTGTCCTCATCAACGGTAAAGATGCAAAGGGCGACGGTAAAGACGAGCCCCTCTTCACCATGAAAGCCGGCAAGACCTACAAGTATAGGATTTGCAATGTAGGTCTTAAGAACACCCTTAACTTTAGGATCCAAGAACACTGGATGACGTTAGTGGAGATGGAGGGCTCCCACACCGTCCAAAATACGTACCAGTCACTTGATGTGCATCTCGGGCAATGCATGTCGGTGCTAGTCACAGCTGACAAAGACCCCAAAGACTATTACATGGTAGCATCCACAAGATTCACCAAAAGCGTGCTCACCGGTAAGGGCATCATACGTTATGAAAATGGTAAGGGCCCTGCTGACCCCGAGCTCCCTGAGGCCCCAGAAGGATGGGCATGGTCTCTTAACCAGTTCCGCTCCTTCCGTTGGAATCTCACTGCTAGTGCTGCTAGACCTAATCCTCAGGGCTCCTACCACTACGGAAAGATTAACATCAGCCGCACCATCAGACTCGCCAACGCCGCATCCAAGGTGGATGGCAAGCTACGCTACTCTATAAACGGAGTCTCCCATGTGGACCCTGAAACCCCACTCAAGCTTGCTGAATACTATGGAGTGGGTGACAAGGTGTTCAAGACTGACACCATCAAGGATGAACCCCCAGAGGACGAGACCAAGGTAGAGGTCCATCCCAATGTTGTGAATCAAACCCACAGAGACTTTGTGGAGATTATCTTTGAGAACCACGAGAAGAGCCTCCAGACATGGCACGTGTCGGGATACGCCATCTTTGCCGTCGCCATCGAGCCAGGGAGATGGGACCCAGAAAAAAGGAAAAACTACAACCTTCTTGACGCTGTGAGCAGGCACACAATCCAAGTGTACCCCAAATCATGGGCTGCCATCATGACCTCATTCGACAACCCCGGAATGTGGAATATTAGGTCAGAGCATCCGGAAAGGCGCTACCTAGGGCAACAACTCTATATCGCCGTTCCTAATCCTAGCCATTCTACAAGGGACGAGTACAATATGCCAGACACCGCCCTGGTCTGCGGCATCGTTAAGGACATGCCCAAGCCGCCCCCACCTTACCGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

477

Amino Acids

54.12

Weight (kDa)

8.78

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	8 - 71	3.5e-18	Multicopper oxidase
Cu-oxidase	PF00394	83 - 225	5.8e-42	Multicopper oxidase
Cu-oxidase_2	PF07731	306 - 445	1.2e-25	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55560 AT1G55570 AT3G13390 AT3G13400 AT3G13400
fragaria_vesca	FvH4_3g46080 FvH4_6g20700
malus_domestica	MD03G1000200.v1.1 MD03G1000500.v1.1 MD11G1000300.v1.1 MD11G1000400.v1.1
prunus_persica	Prupe.6G000400_v2.0.a1 Prupe.6G000500_v2.0.a1
pyrus_communis	pycom03g00050 pycom11g00060
rosa_chinensis	RchiOBHm_Chr3g0476601 RchiOBHm_Chr3g0476621 RchiOBHm_Chr5g0084141
rosa_laevigata	RLG00000001981 RLG00000001982 RLG00000023759 RLG00000037086
rosa_multiflora	Rmu_co7980006.1_g000001 Rmu_sc0008241.1_g000008 Rmu_sc0008241.1_g000011 Rmu_sc0014688.1_g000001 Rmu_sc0035447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000500 Rroxscaffold_6G00405150 Rroxscaffold_6G00405170
rosa_rugosa	Rorug03G0155600 Rorug03G0155900 Rorug05G0489500
rosa_samantha	Rh3AG206200 Rh3CG232600 Rh3DG232400 Rh3DG232600 Rh5AG542100 Rh5CG589700 Rh5DG576100 Rh7DG309900
rosa_wichuraiana	Rw3G018780 Rw3G018790 Rw5G050430 Rw7G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	1224
AccBSI	CCGCTC	1 cut(s)	747
AccI	GTMKAC	1 cut(s)	214
AccII	CGCG	2 cut(s)	92, 201
AccIII	TCCGGA	2 cut(s)	241, 1285
AclWI	GGATC	4 cut(s)	135, 214, 466, 479
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	46
AcvI	CACGTG	1 cut(s)	1102
AfaI	GTAC	4 cut(s)	278, 533, 1214, 1358
AfiI	CCNNNNNNNGG	5 cut(s)	124, 268, 756, 1224, 1263
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	1101
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	1 cut(s)	964
AjnI	CCWGG	5 cut(s)	67, 117, 332, 1138, 1377
AluBI	AGCT	5 cut(s)	141, 584, 700, 874, 928
AluI	AGCT	5 cut(s)	141, 584, 700, 874, 928
Alw21I	GWGCWC	2 cut(s)	645, 702
Alw26I	GTCTC	5 cut(s)	200, 735, 901, 995, 1041
AlwI	GGATC	4 cut(s)	135, 214, 466, 479
Ama87I	CYCGRG	2 cut(s)	554, 695
Aor13HI	TCCGGA	2 cut(s)	241, 1285
AoxI	GGCC	4 cut(s)	330, 335, 682, 708
ApaI	GGGCCC	1 cut(s)	686
ApeKI	GCWGC	3 cut(s)	138, 776, 1229
ApoI	RAATTY	1 cut(s)	46
AsiGI	ACCGGT	1 cut(s)	647
AspA2I	CCTAGG	1 cut(s)	1300
AspLEI	GCGC	1 cut(s)	1296
AspS9I	GGNCC	6 cut(s)	682, 683, 709, 907, 1015, 1150
AsuC2I	CCSGG	1 cut(s)	1257
AsuHPI	GGTGA	6 cut(s)	97, 133, 391, 622, 637, 962
AvaI	CYCGRG	2 cut(s)	554, 695
AvaII	GGWCC	3 cut(s)	907, 1015, 1150
AvrII	CCTAGG	1 cut(s)	1300
AxyI	CCTNAGG	2 cut(s)	705, 792
BaeGI	GKGCMC	2 cut(s)	83, 686
BalI	TGGCCA	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	471
BanII	GRGCYC	5 cut(s)	393, 512, 686, 702, 800
BauI	CACGAG	1 cut(s)	1076
BbrPI	CACGTG	1 cut(s)	1102
Bbv12I	GWGCWC	2 cut(s)	645, 702
BbvI	GCAGC	3 cut(s)	150, 763, 1216
BceAI	ACGGC	2 cut(s)	1109, 1307
BciT130I	CCWGG	5 cut(s)	69, 119, 334, 1140, 1379
BciVI	GTATCC	2 cut(s)	41, 1103
BcnI	CCSGG	1 cut(s)	1257
BcoDI	GTCTC	5 cut(s)	200, 735, 901, 995, 1041
BfaI	CTAG	5 cut(s)	575, 771, 780, 1301, 1335
BfoI	RGCGCY	1 cut(s)	1297
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	2 cut(s)	41, 1103
BisI	GCNGC	7 cut(s)	139, 777, 829, 852, 1230, 1387, 1412
BlnI	CCTAGG	1 cut(s)	1300
BlsI	GCNGC	7 cut(s)	140, 778, 830, 853, 1231, 1388, 1413
Bme1390I	CCNGG	6 cut(s)	69, 119, 334, 1140, 1257, 1379
Bme18I	GGWCC	3 cut(s)	907, 1015, 1150
BmeT110I	CYCGRG	2 cut(s)	554, 695
BmgT120I	GGNCC	6 cut(s)	682, 683, 709, 907, 1015, 1150
BmiI	GGNNCC	8 cut(s)	473, 511, 684, 711, 799, 909, 1151, 1152
BmrFI	CCNGG	6 cut(s)	69, 119, 334, 1140, 1257, 1379
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	7 cut(s)	355, 559, 626, 666, 863, 1291, 1398
BmuI	ACTGGG	1 cut(s)	218
BoxI	GACNNNNGTC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	1073
BpuEI	CTTGAG	1 cut(s)	908
BpuMI	CCSGG	1 cut(s)	1257
BsaAI	YACGTR	2 cut(s)	531, 1102
BsaBI	GATNNNNATC	2 cut(s)	549, 821
BsaI	GGTCTC	3 cut(s)	200, 735, 995
BsaJI	CCNNGG	7 cut(s)	90, 858, 1005, 1139, 1255, 1300, 1377
BsaWI	WCCGGW	4 cut(s)	241, 647, 1285, 1425
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bsc4I	CCNNNNNNNGG	5 cut(s)	124, 268, 756, 1224, 1263
Bse118I	RCCGGY	2 cut(s)	410, 647
Bse1I	ACTGG	5 cut(s)	224, 278, 488, 535, 739
Bse21I	CCTNAGG	2 cut(s)	705, 792
Bse3DI	GCAATG	2 cut(s)	445, 566
Bse8I	GATNNNNATC	2 cut(s)	549, 821
BseAI	TCCGGA	2 cut(s)	241, 1285
BseBI	CCWGG	5 cut(s)	69, 119, 334, 1140, 1379
BseDI	CCNNGG	7 cut(s)	90, 858, 1005, 1139, 1255, 1300, 1377
BseGI	GGATG	9 cut(s)	253, 492, 617, 725, 854, 871, 988, 1018, 1282
BseJI	GATNNNNATC	2 cut(s)	549, 821
BseLI	CCNNNNNNNGG	5 cut(s)	124, 268, 756, 1224, 1263
BseMI	GCAATG	2 cut(s)	445, 566
BseMII	CTCAG	2 cut(s)	696, 806
BseNI	ACTGG	5 cut(s)	224, 278, 488, 535, 739
BseSI	GKGCMC	2 cut(s)	83, 686
BseXI	GCAGC	3 cut(s)	150, 763, 1216
Bsh1236I	CGCG	2 cut(s)	92, 201
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	4 cut(s)	332, 337, 684, 710
BshTI	ACCGGT	1 cut(s)	647
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	645, 702
BsiHKCI	CYCGRG	2 cut(s)	554, 695
BsiSI	CCGG	6 cut(s)	242, 411, 648, 1257, 1286, 1426
BslFI	GGGAC	3 cut(s)	284, 1163, 1364
BslI	CCNNNNNNNGG	5 cut(s)	124, 268, 756, 1224, 1263
BsmAI	GTCTC	5 cut(s)	200, 735, 901, 995, 1041
BsmFI	GGGAC	3 cut(s)	284, 1163, 1364
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	332, 337, 684, 710
Bso31I	GGTCTC	3 cut(s)	200, 735, 995
BsoBI	CYCGRG	2 cut(s)	554, 695
Bsp120I	GGGCCC	1 cut(s)	682
Bsp1286I	GDGCHC	7 cut(s)	83, 393, 512, 645, 686, 702, 800
Bsp13I	TCCGGA	2 cut(s)	241, 1285
Bsp143I	GATC	3 cut(s)	127, 219, 471
BspANI	GGCC	4 cut(s)	332, 337, 684, 710
BspCNI	CTCAG	2 cut(s)	697, 805
BspEI	TCCGGA	2 cut(s)	241, 1285
BspFNI	CGCG	2 cut(s)	92, 201
BspHI	TCATGA	1 cut(s)	1236
BspLI	GGNNCC	8 cut(s)	473, 511, 684, 711, 799, 909, 1151, 1152
BspPI	GGATC	4 cut(s)	135, 214, 466, 479
BspQI	GCTCTTC	1 cut(s)	1076
BspTI	CTTAAG	1 cut(s)	449
BspTNI	GGTCTC	3 cut(s)	200, 735, 995
BsrBI	CCGCTC	1 cut(s)	747
BsrDI	GCAATG	2 cut(s)	445, 566
BsrFI	RCCGGY	2 cut(s)	410, 647
BsrI	ACTGG	5 cut(s)	224, 278, 488, 535, 739
BssAI	RCCGGY	2 cut(s)	410, 647
BssECI	CCNNGG	7 cut(s)	90, 858, 1005, 1139, 1255, 1300, 1377
BssMI	GATC	3 cut(s)	127, 219, 471
BssSI	CACGAG	1 cut(s)	1076
BssT1I	CCWWGG	3 cut(s)	858, 1005, 1300
Bst2BI	CACGAG	1 cut(s)	1076
Bst2UI	CCWGG	5 cut(s)	69, 119, 334, 1140, 1379
Bst4CI	ACNGT	5 cut(s)	259, 344, 359, 380, 520
Bst6I	CTCTTC	2 cut(s)	401, 1076
BstAFI	CTTAAG	1 cut(s)	449
BstBAI	YACGTR	2 cut(s)	531, 1102
BstC8I	GCNNGC	6 cut(s)	178, 412, 641, 872, 930, 1196
BstDEI	CTNAG	2 cut(s)	705, 792
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	9 cut(s)	253, 492, 617, 725, 854, 871, 988, 1018, 1282
BstFNI	CGCG	2 cut(s)	92, 201
BstH2I	RGCGCY	1 cut(s)	1297
BstHHI	GCGC	1 cut(s)	1296
BstKTI	GATC	3 cut(s)	130, 222, 474
BstMAI	GTCTC	5 cut(s)	200, 735, 901, 995, 1041
BstMBI	GATC	3 cut(s)	127, 219, 471
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 198, 556, 776, 851, 876, 1121, 1411
BstNI	CCWGG	5 cut(s)	69, 119, 334, 1140, 1379
BstNSI	RCATGY	2 cut(s)	568, 1405
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSCI	CCNGG	6 cut(s)	67, 117, 332, 1138, 1255, 1377
BstSLI	GKGCMC	2 cut(s)	83, 686
BstSNI	TACGTA	1 cut(s)	531
BstUI	CGCG	2 cut(s)	92, 201
BstV1I	GCAGC	3 cut(s)	150, 763, 1216
BstX2I	RGATCY	1 cut(s)	471
BstXI	CCANNNNNNTGG	2 cut(s)	720, 1146
BstYI	RGATCY	1 cut(s)	471
Bsu36I	CCTNAGG	2 cut(s)	705, 792
BsuI	GTATCC	2 cut(s)	41, 1103
BsuRI	GGCC	4 cut(s)	332, 337, 684, 710
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	9 cut(s)	253, 492, 617, 725, 854, 871, 988, 1018, 1282
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	255, 481, 765
Cac8I	GCNNGC	6 cut(s)	178, 412, 641, 872, 930, 1196
CciI	TCATGA	1 cut(s)	1236
CfoI	GCGC	1 cut(s)	1296
Cfr10I	RCCGGY	2 cut(s)	410, 647
Cfr13I	GGNCC	6 cut(s)	682, 683, 709, 907, 1015, 1150
Cfr42I	CCGCGG	1 cut(s)	93
CseI	GACGC	1 cut(s)	1193
Csp6I	GTAC	4 cut(s)	277, 532, 1213, 1357
CspAI	ACCGGT	1 cut(s)	647
CviQI	GTAC	4 cut(s)	277, 532, 1213, 1357
DdeI	CTNAG	2 cut(s)	705, 792
DpnI	GATC	3 cut(s)	129, 221, 473
DpnII	GATC	3 cut(s)	127, 219, 471
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	401, 1076
EarI	CTCTTC	2 cut(s)	401, 1076
Ecl136II	GAGCTC	1 cut(s)	700
Eco105I	TACGTA	1 cut(s)	531
Eco130I	CCWWGG	3 cut(s)	858, 1005, 1300
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	5 cut(s)	393, 512, 686, 702, 800
Eco31I	GGTCTC	3 cut(s)	200, 735, 995
Eco47I	GGWCC	3 cut(s)	907, 1015, 1150
Eco53kI	GAGCTC	1 cut(s)	700
Eco72I	CACGTG	1 cut(s)	1102
Eco81I	CCTNAGG	2 cut(s)	705, 792
Eco88I	CYCGRG	2 cut(s)	554, 695
EcoICRI	GAGCTC	1 cut(s)	700
EcoO109I	RGGNCCY	4 cut(s)	682, 683, 709, 1150
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	5 cut(s)	67, 117, 332, 1138, 1377
EcoT14I	CCWWGG	3 cut(s)	858, 1005, 1300
EcoT22I	ATGCAT	1 cut(s)	566
EcoT38I	GRGCYC	5 cut(s)	393, 512, 686, 702, 800
ErhI	CCWWGG	3 cut(s)	858, 1005, 1300
FaqI	GGGAC	3 cut(s)	284, 1163, 1364
FauI	CCCGC	2 cut(s)	85, 97
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	7 cut(s)	139, 777, 829, 852, 1230, 1387, 1412
FokI	GGATG	9 cut(s)	260, 499, 604, 732, 841, 878, 995, 1005, 1269
FriOI	GRGCYC	5 cut(s)	393, 512, 686, 702, 800
Fsp4HI	GCNGC	7 cut(s)	139, 777, 829, 852, 1230, 1387, 1412
FspBI	CTAG	5 cut(s)	575, 771, 780, 1301, 1335
GlaI	GCGC	1 cut(s)	1295
GluI	GCNGC	7 cut(s)	139, 777, 829, 852, 1230, 1387, 1412
GsuI	CTGGAG	1 cut(s)	1073
HaeII	RGCGCY	1 cut(s)	1297
HaeIII	GGCC	4 cut(s)	332, 337, 684, 710
HapII	CCGG	6 cut(s)	242, 411, 648, 1257, 1286, 1426
HgaI	GACGC	1 cut(s)	1193
HhaI	GCGC	1 cut(s)	1296
Hin6I	GCGC	1 cut(s)	1294
HinP1I	GCGC	1 cut(s)	1294
HindIII	AAGCTT	1 cut(s)	926
HinfI	GANTC	5 cut(s)	627, 760, 840, 894, 1033
HpaII	CCGG	6 cut(s)	242, 411, 648, 1257, 1286, 1426
HphI	GGTGA	6 cut(s)	97, 133, 391, 622, 637, 962
Hpy166II	GTNNAC	4 cut(s)	215, 279, 907, 1213
Hpy188I	TCNGA	3 cut(s)	132, 839, 1279
Hpy188III	TCNNGA	8 cut(s)	242, 301, 964, 1090, 1107, 1181, 1237, 1286
Hpy8I	GTNNAC	4 cut(s)	215, 279, 907, 1213
Hpy99I	CGWCG	2 cut(s)	380, 1130
HpyAV	CCTTC	4 cut(s)	118, 710, 760, 1187
HpyCH4III	ACNGT	5 cut(s)	259, 344, 359, 380, 520
HpyCH4IV	ACGT	4 cut(s)	491, 530, 664, 1101
HpyCH4V	TGCA	8 cut(s)	13, 21, 169, 185, 368, 438, 550, 564
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 198, 556, 776, 851, 876, 1121, 1411
HpyF3I	CTNAG	2 cut(s)	705, 792
HpySE526I	ACGT	4 cut(s)	491, 530, 664, 1101
HspAI	GCGC	1 cut(s)	1294
KflI	GGGWCCC	1 cut(s)	1150
Kpn2I	TCCGGA	2 cut(s)	241, 1285
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
KspI	CCGCGG	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	127, 219, 471
LguI	GCTCTTC	1 cut(s)	1076
LmnI	GCTCC	4 cut(s)	515, 705, 752, 803
Lsp1109I	GCAGC	3 cut(s)	150, 763, 1216
LweI	GCATC	7 cut(s)	355, 559, 626, 666, 863, 1291, 1398
MaeI	CTAG	5 cut(s)	575, 771, 780, 1301, 1335
MaeII	ACGT	4 cut(s)	491, 530, 664, 1101
MaeIII	GTNAC	3 cut(s)	537, 577, 950
MalI	GATC	3 cut(s)	129, 221, 473
MbiI	CCGCTC	1 cut(s)	747
MboI	GATC	3 cut(s)	127, 219, 471
MboII	GAAGA	3 cut(s)	55, 388, 1093
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	7 cut(s)	83, 393, 512, 645, 686, 702, 800
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	2 cut(s)	4, 46
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	834, 903
MmeI	TCCRAC	2 cut(s)	179, 737
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	1 cut(s)	566
MroI	TCCGGA	2 cut(s)	241, 1285
MroNI	GCCGGC	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	5 cut(s)	450, 462, 735, 819, 1395
MslI	CAYNNNNRTG	2 cut(s)	569, 1023
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	3 cut(s)	92, 318, 584
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	6 cut(s)	242, 411, 648, 1257, 1286, 1426
MspR9I	CCNGG	6 cut(s)	69, 119, 334, 1140, 1257, 1379
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	5 cut(s)	69, 119, 334, 1140, 1379
MvnI	CGCG	2 cut(s)	92, 201
MwoI	GCNNNNNNNGC	8 cut(s)	182, 198, 556, 776, 851, 876, 1121, 1411
NaeI	GCCGGC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	1257
NdeII	GATC	3 cut(s)	127, 219, 471
NgoMIV	GCCGGC	1 cut(s)	410
NlaIV	GGNNCC	8 cut(s)	473, 511, 684, 711, 799, 909, 1151, 1152
NmuCI	GTSAC	3 cut(s)	537, 577, 950
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	2 cut(s)	568, 1405
PagI	TCATGA	1 cut(s)	1236
PceI	AGGCCT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	1076
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	412
PfeI	GAWTC	3 cut(s)	627, 760, 1033
PflFI	GACNNNGTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	1224
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	7 cut(s)	140, 778, 830, 853, 1231, 1388, 1413
PleI	GAGTC	2 cut(s)	834, 902
PmaCI	CACGTG	1 cut(s)	1102
PmlI	CACGTG	1 cut(s)	1102
PpsI	GAGTC	2 cut(s)	834, 902
Ppu21I	YACGTR	2 cut(s)	531, 1102
PpuMI	RGGWCCY	1 cut(s)	1150
PshAI	GACNNNNGTC	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	702
Psp5II	RGGWCCY	1 cut(s)	1150
Psp6I	CCWGG	5 cut(s)	67, 117, 332, 1138, 1377
PspCI	CACGTG	1 cut(s)	1102
PspGI	CCWGG	5 cut(s)	67, 117, 332, 1138, 1377
PspN4I	GGNNCC	8 cut(s)	473, 511, 684, 711, 799, 909, 1151, 1152
PspOMI	GGGCCC	1 cut(s)	682
PspPI	GGNCC	6 cut(s)	682, 683, 709, 907, 1015, 1150
PspPPI	RGGWCCY	1 cut(s)	1150
PsuI	RGATCY	1 cut(s)	471
PsyI	GACNNNGTC	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	4 cut(s)	278, 533, 1214, 1358
RsaNI	GTAC	4 cut(s)	277, 532, 1213, 1357
RseI	CAYNNNNRTG	2 cut(s)	569, 1023
SacI	GAGCTC	1 cut(s)	702
SacII	CCGCGG	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	1076
SaqAI	TTAA	5 cut(s)	450, 462, 735, 819, 1395
SatI	GCNGC	7 cut(s)	139, 777, 829, 852, 1230, 1387, 1412
Sau3AI	GATC	3 cut(s)	127, 219, 471
Sau96I	GGNCC	6 cut(s)	682, 683, 709, 907, 1015, 1150
SchI	GAGTC	2 cut(s)	834, 903
ScrFI	CCNGG	6 cut(s)	69, 119, 334, 1140, 1257, 1379
SduI	GDGCHC	7 cut(s)	83, 393, 512, 645, 686, 702, 800
SfaNI	GCATC	7 cut(s)	355, 559, 626, 666, 863, 1291, 1398
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
SinI	GGWCC	3 cut(s)	907, 1015, 1150
SmiMI	CAYNNNNRTG	2 cut(s)	569, 1023
SmlI	CTYRAG	2 cut(s)	449, 923
SmoI	CTYRAG	2 cut(s)	449, 923
SnaBI	TACGTA	1 cut(s)	531
Sse9I	AATT	2 cut(s)	4, 46
SseBI	AGGCCT	1 cut(s)	337
SspI	AATATT	1 cut(s)	1270
SspMI	CTAG	5 cut(s)	575, 771, 780, 1301, 1335
SstI	GAGCTC	1 cut(s)	702
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	6 cut(s)	67, 117, 332, 1138, 1255, 1377
StyI	CCWWGG	3 cut(s)	858, 1005, 1300
TaaI	ACNGT	5 cut(s)	259, 344, 359, 380, 520
TaiI	ACGT	4 cut(s)	494, 533, 667, 1104
TaqI	TCGA	2 cut(s)	1134, 1248
TasI	AATT	2 cut(s)	4, 46
TatI	WGTACW	1 cut(s)	1356
TauI	GCSGC	4 cut(s)	831, 854, 1389, 1414
TfiI	GAWTC	3 cut(s)	627, 760, 1033
Tru1I	TTAA	5 cut(s)	450, 462, 735, 819, 1395
Tru9I	TTAA	5 cut(s)	450, 462, 735, 819, 1395
TscAI	CASTG	3 cut(s)	262, 488, 772
TseFI	GTSAC	3 cut(s)	537, 577, 950
TseI	GCWGC	3 cut(s)	138, 776, 1229
Tsp45I	GTSAC	3 cut(s)	537, 577, 950
TspDTI	ATGAA	5 cut(s)	17, 39, 419, 684, 999
TspGWI	ACGGA	4 cut(s)	75, 743, 825, 906
TspRI	CASTG	3 cut(s)	262, 488, 772
Tth111I	GACNNNGTC	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	1224
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	3 cut(s)	907, 1015, 1150
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	2 cut(s)	568, 1405
XmaJI	CCTAGG	1 cut(s)	1300
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	5 cut(s)	575, 771, 780, 1301, 1335
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.