Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035447.1

Orthogroup ID

OG0001996

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 487

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035447.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgaccatgaaattgctgctgttgtgcctctcgattggcgtaatctcagttgttcatggtgaggatccttaccttttcttcacatggaatgtaacctatggaaccatctctcccctaggagtcccccagcaaggcattctcatcaacggcgagtttccgggacctaacattaactccaccaccaacaacaacatcgtcatcaatgtcttcaacaaccttgatgaaccattgatgttcacatggaatggaatccaacagaagaagaattcatggcaagatggaacaccagggactatgtgccctattcctcctggtcagaactacacataccacttccaagtgaaggaccagattggaagctatttctactatcccatcactgccatgcacagagcaggtggtgccttgccagtgctgccaggcctaaccctcaaggctcctatcactatggtgccatcaacatcacccgcaccatcaagctcgtca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

162

Amino Acids

17.68

Weight (kDa)

6.23

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55560 AT1G55570 AT3G13390 AT3G13400 AT3G13400
fragaria_vesca	FvH4_3g46080 FvH4_6g20700
malus_domestica	MD03G1000200.v1.1 MD03G1000500.v1.1 MD11G1000300.v1.1 MD11G1000400.v1.1
prunus_persica	Prupe.6G000400_v2.0.a1 Prupe.6G000500_v2.0.a1
pyrus_communis	pycom03g00050 pycom11g00060
rosa_chinensis	RchiOBHm_Chr3g0476601 RchiOBHm_Chr3g0476621 RchiOBHm_Chr5g0084141
rosa_laevigata	RLG00000001981 RLG00000001982 RLG00000023759 RLG00000037086
rosa_multiflora	Rmu_co7980006.1_g000001 Rmu_sc0008241.1_g000008 Rmu_sc0008241.1_g000011 Rmu_sc0014688.1_g000001 Rmu_sc0035447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000500 Rroxscaffold_6G00405150 Rroxscaffold_6G00405170
rosa_rugosa	Rorug03G0155600 Rorug03G0155900 Rorug05G0489500
rosa_samantha	Rh3AG206200 Rh3CG232600 Rh3DG232400 Rh3DG232600 Rh5AG542100 Rh5CG589700 Rh5DG576100 Rh7DG309900
rosa_wichuraiana	Rw3G018780 Rw3G018790 Rw5G050430 Rw7G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	386
AccB1I	GGYRCC	2 cut(s)	401, 451
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	59, 72
AcsI	RAATTY	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	131, 343
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	286, 310, 418
AleI	CACNNNNGTG	1 cut(s)	449
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	2 cut(s)	360, 480
AluI	AGCT	2 cut(s)	360, 480
AlwI	GGATC	2 cut(s)	59, 72
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	16, 415
ApoI	RAATTY	1 cut(s)	265
AspA2I	CCTAGG	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	161, 346
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	71, 456
AvaII	GGWCC	2 cut(s)	161, 346
AvrII	CCTAGG	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	401, 451
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	3, 402
BccI	CCATC	5 cut(s)	113, 272, 383, 463, 481
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	3 cut(s)	288, 312, 420
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	386
BisI	GCNGC	2 cut(s)	17, 416
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	2 cut(s)	18, 417
Bme1390I	CCNGG	4 cut(s)	159, 288, 312, 420
Bme18I	GGWCC	2 cut(s)	161, 346
BmgT120I	GGNCC	2 cut(s)	161, 346
BmiI	GGNNCC	6 cut(s)	66, 103, 162, 403, 438, 453
BmrFI	CCNGG	4 cut(s)	159, 288, 312, 420
BpiI	GAAGAC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	115, 287
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 343
Bse1I	ACTGG	1 cut(s)	410
BseBI	CCWGG	3 cut(s)	288, 312, 420
BseDI	CCNNGG	2 cut(s)	115, 287
BseLI	CCNNNNNNNGG	2 cut(s)	131, 343
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	3, 402
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	423
BshNI	GGYRCC	2 cut(s)	401, 451
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	3 cut(s)	107, 174, 304
BslI	CCNNNNNNNGG	2 cut(s)	131, 343
BsmFI	GGGAC	3 cut(s)	107, 174, 304
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	6 cut(s)	66, 103, 162, 403, 438, 453
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	59, 72
BspT107I	GGYRCC	2 cut(s)	401, 451
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	115, 287
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	3 cut(s)	288, 312, 420
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 415
BstNI	CCWGG	3 cut(s)	288, 312, 420
BstSCI	CCNGG	4 cut(s)	157, 286, 310, 418
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	3, 402
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 417
BveI	ACCTGC	1 cut(s)	386
Cfr13I	GGNCC	2 cut(s)	161, 346
CviAII	CATG	6 cut(s)	7, 56, 84, 240, 270, 385
CviJI	RGCY	4 cut(s)	360, 423, 437, 480
CviKI_1	RGCY	4 cut(s)	360, 423, 437, 480
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	161, 346
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	286, 310, 418
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	6 cut(s)	10, 59, 87, 243, 273, 388
FaqI	GGGAC	3 cut(s)	107, 174, 304
FatI	CATG	6 cut(s)	6, 55, 83, 239, 269, 384
FauI	CCCGC	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	17, 416
Fsp4HI	GCNGC	2 cut(s)	17, 416
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	2 cut(s)	17, 416
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	6 cut(s)	10, 59, 87, 243, 273, 388
HinfI	GANTC	2 cut(s)	120, 249
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	71, 456
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 415
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	6 cut(s)	10, 59, 87, 243, 273, 388
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	3, 402
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	4 cut(s)	70, 199, 271, 274
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	2 cut(s)	11, 265
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	38, 55, 318, 440
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	2 cut(s)	383, 449
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	4 cut(s)	159, 288, 312, 420
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	3 cut(s)	288, 312, 420
MwoI	GCNNNNNNNGC	2 cut(s)	401, 415
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	6 cut(s)	10, 59, 87, 243, 273, 388
NlaIV	GGNNCC	6 cut(s)	66, 103, 162, 403, 438, 453
OliI	CACNNNNGTG	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	386
PceI	AGGCCT	1 cut(s)	423
PctI	GAATGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	249
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	18, 417
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	3 cut(s)	286, 310, 418
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	3 cut(s)	286, 310, 418
PspN4I	GGNNCC	6 cut(s)	66, 103, 162, 403, 438, 453
PspPI	GGNCC	2 cut(s)	161, 346
PspPPI	RGGWCCY	1 cut(s)	161
PsrI	GAACNNNNNNTAC	2 cut(s)	311, 343
PsuI	RGATCY	1 cut(s)	64
RseI	CAYNNNNRTG	2 cut(s)	383, 449
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	17, 416
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	161, 346
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	4 cut(s)	159, 288, 312, 420
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	7 cut(s)	75, 98, 166, 219, 362, 400, 482
SinI	GGWCC	2 cut(s)	161, 346
SmiMI	CAYNNNNRTG	2 cut(s)	383, 449
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	11, 265
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	4 cut(s)	157, 286, 310, 418
StyI	CCWWGG	1 cut(s)	115
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	11, 265
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	385, 417
TseI	GCWGC	2 cut(s)	16, 415
TspDTI	ATGAA	4 cut(s)	23, 44, 237, 258
TspRI	CASTG	2 cut(s)	385, 417
VpaK11BI	GGWCC	2 cut(s)	161, 346
XapI	RAATTY	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	115
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.