Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001996

Physical Location & Seq

Genomic Coordinates Forward (+)

929052 .. 930909

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGTCCGGAATGATGCTTCTGCTGCTGCTATGTCTCTCACTGGGGACAATTTCAGTCGTGCACTGTGGAGACCCTACCATAAACTTCGAATGGAATGTCACCCATGGAACCCTCTCTCCACTGGGAGTCCCACAGCAGGTCATTCTCATCAATGGCCAATTTCCTGGTCCCAACATTAATTCCACCACAAACAACAACGTAGTCGTGAACGTGTTCAATAACCTGGACGAGCCATTCCTTTTGACATGGAGTGGTATCCAGCAGAGGAAGAATTCATGGCAAGACGGAACACCTGGAACTATGTGTCCCATACCCGCGGGTAAGAACTTCACCTATCAGTTCCAGGTGAAGGATCAGATTGGCAGCTTTATATACTATCCAACAACTGCTATGCACAGGGCTGGCGGTGCATTCGGCGGTCTCCGCGTGAATAGTCGTCTATTGATCCCAGTTCCTTATGATACTCCGGAGGATGACTACACTGTCCTCATCGGGGACTGGCCTGACGGTGTCCTCATCAACGGTAAAGATGCAAAGGGCGATGGTAAAGACGAGCCCCTCTTCACCATGAAAGCCGGCAAGACCTACAAGTATAGGATTTGCAATGTAGGTCTTAAGAACACCCTCAACTTTAGGATCCAAGAACACTGGATGACGTTAGTGGAGATGGAGGGCTCCCACACCGTCCAAAATACGTACCAGTCACTTGATGTGCATCTCGGGCAATGCATGGCTGTGCTAGTCACAGCTGACAAAGACCCCAAAGACTATTACATGGTAGCATCCACAAGATTCACCAAAAGCGTACTCACCGGTAAGGGCATCATACGTTATGAAAATGGTAAGGGCCCTGCGGACCCCGAGCTCCCTGAGGCCCCAGAAGGATGGGCGTGGTCTCTTAACCAGTTCCGCTCCTTCCGTTGGAATCTCACCGCTAGTGCTGCTAGACCTAATCCTCAGGGCTCCTACCACTACGGAAAGATTAACATCAGCCGCACCATCAGACTCGCCAACGCCGCATCCAAGGTGGATGGCAAGCTACGCTACTCTATAAACGGAGTCTCCCATGTGGACCCTGAAACCCCACTCAAGCTTGCTGAATACTATGGAGTGGGTGACAAGGTGTTCAAGACTGACACCATCAAGGATGAACCCCCAAAGGACGAGACCAAGGTAGAGGTCCATCCCAATGTTGTGAATCAAACCCACAGAGACTTTGTGGAGATTATCTTTGAGAACCACGAGAAGAGCCTTCAGACATGGCACGTGTCGGGATACGCCATCTTTGCCGTCGCCATCGAGCCAGGGAGATGGGACCCAGAAAAAAGGAAAAACTACAACCTTCTTGACGCTGTGAGCAGGCACACAATCCAAGTGTACCCCAAATCATGGGCTGCCATCATGACCTCATTCGACAACCCCGGAATGTGGAATATTAGGTCAGAGCATCCGGAAAGGCGCTACCTAGGGCAACAACTCTATATCGCCGTTCCTAATCCTAGCCGTTCTACAAGGGACGAGTACAATATGCCAGACACCGCATTGGTCTGCGGCATCGTTAAGGACATGCCCAAGCCGCCCCCACCTTACGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

532

Amino Acids

59.73

Weight (kDa)

6.92

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	33 - 146	1.6e-39	Multicopper oxidase
Cu-oxidase	PF00394	167 - 280	1.2e-33	Multicopper oxidase
Cu-oxidase_2	PF07731	361 - 500	1.3e-25	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55560 AT1G55570 AT3G13390 AT3G13400 AT3G13400
fragaria_vesca	FvH4_3g46080 FvH4_6g20700
malus_domestica	MD03G1000200.v1.1 MD03G1000500.v1.1 MD11G1000300.v1.1 MD11G1000400.v1.1
prunus_persica	Prupe.6G000400_v2.0.a1 Prupe.6G000500_v2.0.a1
pyrus_communis	pycom03g00050 pycom11g00060
rosa_chinensis	RchiOBHm_Chr3g0476601 RchiOBHm_Chr3g0476621 RchiOBHm_Chr5g0084141
rosa_laevigata	RLG00000001981 RLG00000001982 RLG00000023759 RLG00000037086
rosa_multiflora	Rmu_co7980006.1_g000001 Rmu_sc0008241.1_g000008 Rmu_sc0008241.1_g000011 Rmu_sc0014688.1_g000001 Rmu_sc0035447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000500 Rroxscaffold_6G00405150 Rroxscaffold_6G00405170
rosa_rugosa	Rorug03G0155600 Rorug03G0155900 Rorug05G0489500
rosa_samantha	Rh3AG206200 Rh3CG232600 Rh3DG232400 Rh3DG232600 Rh5AG542100 Rh5CG589700 Rh5DG576100 Rh7DG309900
rosa_wichuraiana	Rw3G018780 Rw3G018790 Rw5G050430 Rw7G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	1389
AccBSI	CCGCTC	1 cut(s)	912
AccII	CGCG	2 cut(s)	317, 426
AccIII	TCCGGA	3 cut(s)	5, 466, 1450
AclWI	GGATC	4 cut(s)	360, 439, 631, 644
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	1238
AcvI	CACGTG	1 cut(s)	1267
AfaI	GTAC	4 cut(s)	698, 807, 1379, 1523
AfiI	CCNNNNNNNGG	7 cut(s)	136, 349, 493, 921, 1389, 1428, 1589
AflII	CTTAAG	1 cut(s)	614
AflIII	ACRYGT	2 cut(s)	210, 1266
AgeI	ACCGGT	1 cut(s)	812
AgsI	TTSAA	2 cut(s)	217, 1129
AjnI	CCWGG	5 cut(s)	163, 222, 292, 342, 1303
AloI	GAACNNNNNNTCC	4 cut(s)	100, 132, 289, 321
AluBI	AGCT	5 cut(s)	366, 749, 865, 1039, 1093
AluI	AGCT	5 cut(s)	366, 749, 865, 1039, 1093
Alw21I	GWGCWC	2 cut(s)	63, 867
Alw26I	GTCTC	7 cut(s)	38, 63, 425, 900, 1066, 1160, 1206
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	4 cut(s)	360, 439, 631, 644
Ama87I	CYCGRG	2 cut(s)	719, 860
Aor13HI	TCCGGA	3 cut(s)	5, 466, 1450
AoxI	GGCC	4 cut(s)	154, 500, 847, 873
ApaI	GGGCCC	1 cut(s)	851
ApaLI	GTGCAC	1 cut(s)	59
ApeKI	GCWGC	5 cut(s)	22, 25, 363, 941, 1394
ApoI	RAATTY	1 cut(s)	271
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AseI	ATTAAT	1 cut(s)	177
AsiGI	ACCGGT	1 cut(s)	812
Asp700I	GAANNNNTTC	1 cut(s)	212
AspA2I	CCTAGG	1 cut(s)	1465
AspLEI	GCGC	1 cut(s)	1461
AspS9I	GGNCC	8 cut(s)	167, 847, 848, 856, 874, 1072, 1180, 1315
AsuC2I	CCSGG	1 cut(s)	1422
AsuHPI	GGTGA	8 cut(s)	91, 322, 358, 556, 787, 802, 922, 1127
AsuII	TTCGAA	1 cut(s)	87
AvaI	CYCGRG	2 cut(s)	719, 860
AvaII	GGWCC	5 cut(s)	167, 856, 1072, 1180, 1315
AvrII	CCTAGG	1 cut(s)	1465
AxyI	CCTNAGG	2 cut(s)	870, 957
BaeGI	GKGCMC	2 cut(s)	63, 851
BalI	TGGCCA	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	636
BanII	GRGCYC	5 cut(s)	558, 677, 851, 867, 965
BauI	CACGAG	1 cut(s)	1241
BbrPI	CACGTG	1 cut(s)	1267
Bbv12I	GWGCWC	2 cut(s)	63, 867
BbvI	GCAGC	5 cut(s)	9, 12, 375, 928, 1381
BceAI	ACGGC	3 cut(s)	1274, 1472, 1488
BciT130I	CCWGG	5 cut(s)	165, 224, 294, 344, 1305
BciVI	GTATCC	2 cut(s)	266, 1268
BcnI	CCSGG	1 cut(s)	1422
BcoDI	GTCTC	7 cut(s)	38, 63, 425, 900, 1066, 1160, 1206
BfaI	CTAG	5 cut(s)	740, 936, 945, 1466, 1500
BfoI	RGCGCY	1 cut(s)	1462
BfrI	CTTAAG	1 cut(s)	614
BfuAI	ACCTGC	1 cut(s)	127
BfuI	GTATCC	2 cut(s)	266, 1268
BisI	GCNGC	9 cut(s)	23, 26, 364, 942, 994, 1017, 1395, 1552, 1577
BlnI	CCTAGG	1 cut(s)	1465
BlsI	GCNGC	9 cut(s)	24, 27, 365, 943, 995, 1018, 1396, 1553, 1578
Bme1390I	CCNGG	6 cut(s)	165, 224, 294, 344, 1305, 1422
Bme18I	GGWCC	5 cut(s)	167, 856, 1072, 1180, 1315
BmeT110I	CYCGRG	2 cut(s)	719, 860
BmgT120I	GGNCC	8 cut(s)	167, 847, 848, 856, 874, 1072, 1180, 1315
BmrFI	CCNGG	6 cut(s)	165, 224, 294, 344, 1305, 1422
BmrI	ACTGGG	3 cut(s)	50, 131, 443
BmsI	GCATC	8 cut(s)	3, 520, 724, 791, 831, 1028, 1456, 1563
BmuI	ACTGGG	3 cut(s)	50, 131, 443
Bpu14I	TTCGAA	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	1073
BpuMI	CCSGG	1 cut(s)	1422
BsaAI	YACGTR	2 cut(s)	696, 1267
BsaBI	GATNNNNATC	2 cut(s)	714, 986
BsaI	GGTCTC	4 cut(s)	63, 425, 900, 1160
BsaJI	CCNNGG	7 cut(s)	103, 315, 1023, 1170, 1304, 1420, 1465
BsaWI	WCCGGW	4 cut(s)	5, 466, 812, 1450
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 1046, 1076
Bsc4I	CCNNNNNNNGG	7 cut(s)	136, 349, 493, 921, 1389, 1428, 1589
Bse118I	RCCGGY	2 cut(s)	575, 812
Bse1I	ACTGG	7 cut(s)	45, 126, 449, 503, 653, 700, 904
Bse21I	CCTNAGG	2 cut(s)	870, 957
Bse3DI	GCAATG	2 cut(s)	610, 731
Bse8I	GATNNNNATC	2 cut(s)	714, 986
BseAI	TCCGGA	3 cut(s)	5, 466, 1450
BseBI	CCWGG	5 cut(s)	165, 224, 294, 344, 1305
BseDI	CCNNGG	7 cut(s)	103, 315, 1023, 1170, 1304, 1420, 1465
BseGI	GGATG	9 cut(s)	478, 657, 782, 890, 1019, 1036, 1153, 1183, 1447
BseJI	GATNNNNATC	2 cut(s)	714, 986
BseLI	CCNNNNNNNGG	7 cut(s)	136, 349, 493, 921, 1389, 1428, 1589
BseMI	GCAATG	2 cut(s)	610, 731
BseMII	CTCAG	2 cut(s)	861, 971
BseNI	ACTGG	7 cut(s)	45, 126, 449, 503, 653, 700, 904
BseSI	GKGCMC	2 cut(s)	63, 851
BseXI	GCAGC	5 cut(s)	9, 12, 375, 928, 1381
Bsh1236I	CGCG	2 cut(s)	317, 426
BshFI	GGCC	4 cut(s)	156, 502, 849, 875
BshTI	ACCGGT	1 cut(s)	812
BsiHKAI	GWGCWC	2 cut(s)	63, 867
BsiHKCI	CYCGRG	2 cut(s)	719, 860
BsiSI	CCGG	6 cut(s)	6, 467, 576, 813, 1422, 1451
BslFI	GGGAC	7 cut(s)	58, 113, 153, 291, 509, 1328, 1529
BslI	CCNNNNNNNGG	7 cut(s)	136, 349, 493, 921, 1389, 1428, 1589
BsmAI	GTCTC	7 cut(s)	38, 63, 425, 900, 1066, 1160, 1206
BsmFI	GGGAC	7 cut(s)	58, 113, 153, 291, 509, 1328, 1529
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	4 cut(s)	156, 502, 849, 875
Bso31I	GGTCTC	4 cut(s)	63, 425, 900, 1160
BsoBI	CYCGRG	2 cut(s)	719, 860
Bsp119I	TTCGAA	1 cut(s)	87
Bsp120I	GGGCCC	1 cut(s)	847
Bsp1286I	GDGCHC	6 cut(s)	63, 558, 677, 851, 867, 965
Bsp13I	TCCGGA	3 cut(s)	5, 466, 1450
Bsp143I	GATC	3 cut(s)	352, 444, 636
Bsp19I	CCATGG	1 cut(s)	103
BspANI	GGCC	4 cut(s)	156, 502, 849, 875
BspCNI	CTCAG	2 cut(s)	862, 970
BspEI	TCCGGA	3 cut(s)	5, 466, 1450
BspFNI	CGCG	2 cut(s)	317, 426
BspHI	TCATGA	1 cut(s)	1401
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	4 cut(s)	360, 439, 631, 644
BspQI	GCTCTTC	1 cut(s)	1241
BspT104I	TTCGAA	1 cut(s)	87
BspTI	CTTAAG	1 cut(s)	614
BspTNI	GGTCTC	4 cut(s)	63, 425, 900, 1160
BsrBI	CCGCTC	1 cut(s)	912
BsrDI	GCAATG	2 cut(s)	610, 731
BsrFI	RCCGGY	2 cut(s)	575, 812
BsrI	ACTGG	7 cut(s)	45, 126, 449, 503, 653, 700, 904
BssAI	RCCGGY	2 cut(s)	575, 812
BssECI	CCNNGG	7 cut(s)	103, 315, 1023, 1170, 1304, 1420, 1465
BssMI	GATC	3 cut(s)	352, 444, 636
BssSI	CACGAG	1 cut(s)	1241
BssT1I	CCWWGG	4 cut(s)	103, 1023, 1170, 1465
Bst2BI	CACGAG	1 cut(s)	1241
Bst2UI	CCWGG	5 cut(s)	165, 224, 294, 344, 1305
Bst4CI	ACNGT	5 cut(s)	65, 484, 509, 524, 685
Bst6I	CTCTTC	2 cut(s)	566, 1241
BstAFI	CTTAAG	1 cut(s)	614
BstBAI	YACGTR	2 cut(s)	696, 1267
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	5 cut(s)	403, 577, 1037, 1095, 1361
BstDEI	CTNAG	2 cut(s)	870, 957
BstDSI	CCRYGG	2 cut(s)	103, 315
BstF5I	GGATG	9 cut(s)	478, 657, 782, 890, 1019, 1036, 1153, 1183, 1447
BstFNI	CGCG	2 cut(s)	317, 426
BstH2I	RGCGCY	1 cut(s)	1462
BstHHI	GCGC	1 cut(s)	1461
BstKTI	GATC	3 cut(s)	355, 447, 639
BstMAI	GTCTC	7 cut(s)	38, 63, 425, 900, 1066, 1160, 1206
BstMBI	GATC	3 cut(s)	352, 444, 636
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 407, 423, 721, 941, 1016, 1041, 1286, 1576
BstNI	CCWGG	5 cut(s)	165, 224, 294, 344, 1305
BstNSI	RCATGY	1 cut(s)	1570
BstSCI	CCNGG	6 cut(s)	163, 222, 292, 342, 1303, 1420
BstSLI	GKGCMC	2 cut(s)	63, 851
BstSNI	TACGTA	1 cut(s)	696
BstUI	CGCG	2 cut(s)	317, 426
BstV1I	GCAGC	5 cut(s)	9, 12, 375, 928, 1381
BstX2I	RGATCY	1 cut(s)	636
BstXI	CCANNNNNNTGG	3 cut(s)	164, 885, 1311
BstYI	RGATCY	1 cut(s)	636
Bsu36I	CCTNAGG	2 cut(s)	870, 957
BsuI	GTATCC	2 cut(s)	266, 1268
BsuRI	GGCC	4 cut(s)	156, 502, 849, 875
BtgI	CCRYGG	2 cut(s)	103, 315
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	9 cut(s)	478, 657, 782, 890, 1019, 1036, 1153, 1183, 1447
BtsIMutI	CAGTG	5 cut(s)	38, 61, 119, 480, 646
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	5 cut(s)	403, 577, 1037, 1095, 1361
CciI	TCATGA	1 cut(s)	1401
CfoI	GCGC	1 cut(s)	1461
Cfr10I	RCCGGY	2 cut(s)	575, 812
Cfr13I	GGNCC	8 cut(s)	167, 847, 848, 856, 874, 1072, 1180, 1315
Cfr42I	CCGCGG	1 cut(s)	318
CseI	GACGC	1 cut(s)	1358
Csp6I	GTAC	4 cut(s)	697, 806, 1378, 1522
CspAI	ACCGGT	1 cut(s)	812
CviQI	GTAC	4 cut(s)	697, 806, 1378, 1522
DdeI	CTNAG	2 cut(s)	870, 957
DpnI	GATC	3 cut(s)	354, 446, 638
DpnII	GATC	3 cut(s)	352, 444, 636
DrdI	GACNNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	566, 1241
EarI	CTCTTC	2 cut(s)	566, 1241
Ecl136II	GAGCTC	1 cut(s)	865
Eco105I	TACGTA	1 cut(s)	696
Eco130I	CCWWGG	4 cut(s)	103, 1023, 1170, 1465
Eco24I	GRGCYC	5 cut(s)	558, 677, 851, 867, 965
Eco31I	GGTCTC	4 cut(s)	63, 425, 900, 1160
Eco47I	GGWCC	5 cut(s)	167, 856, 1072, 1180, 1315
Eco53kI	GAGCTC	1 cut(s)	865
Eco57I	CTGAAG	1 cut(s)	1238
Eco72I	CACGTG	1 cut(s)	1267
Eco81I	CCTNAGG	2 cut(s)	870, 957
Eco88I	CYCGRG	2 cut(s)	719, 860
EcoICRI	GAGCTC	1 cut(s)	865
EcoO109I	RGGNCCY	4 cut(s)	847, 848, 874, 1315
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	5 cut(s)	163, 222, 292, 342, 1303
EcoT14I	CCWWGG	4 cut(s)	103, 1023, 1170, 1465
EcoT22I	ATGCAT	1 cut(s)	731
EcoT38I	GRGCYC	5 cut(s)	558, 677, 851, 867, 965
ErhI	CCWWGG	4 cut(s)	103, 1023, 1170, 1465
FaqI	GGGAC	7 cut(s)	58, 113, 153, 291, 509, 1328, 1529
FauI	CCCGC	2 cut(s)	310, 322
Fnu4HI	GCNGC	9 cut(s)	23, 26, 364, 942, 994, 1017, 1395, 1552, 1577
FokI	GGATG	9 cut(s)	485, 664, 769, 897, 1006, 1043, 1160, 1170, 1434
FriOI	GRGCYC	5 cut(s)	558, 677, 851, 867, 965
Fsp4HI	GCNGC	9 cut(s)	23, 26, 364, 942, 994, 1017, 1395, 1552, 1577
FspBI	CTAG	5 cut(s)	740, 936, 945, 1466, 1500
GlaI	GCGC	1 cut(s)	1460
GluI	GCNGC	9 cut(s)	23, 26, 364, 942, 994, 1017, 1395, 1552, 1577
HaeII	RGCGCY	1 cut(s)	1462
HaeIII	GGCC	4 cut(s)	156, 502, 849, 875
HapII	CCGG	6 cut(s)	6, 467, 576, 813, 1422, 1451
HgaI	GACGC	1 cut(s)	1358
HhaI	GCGC	1 cut(s)	1461
Hin6I	GCGC	1 cut(s)	1459
HinP1I	GCGC	1 cut(s)	1459
HindIII	AAGCTT	1 cut(s)	1091
HinfI	GANTC	6 cut(s)	126, 792, 925, 1005, 1059, 1198
HpaII	CCGG	6 cut(s)	6, 467, 576, 813, 1422, 1451
HphI	GGTGA	8 cut(s)	91, 322, 358, 556, 787, 802, 922, 1127
Hpy166II	GTNNAC	4 cut(s)	61, 208, 1072, 1378
Hpy188I	TCNGA	4 cut(s)	357, 1004, 1257, 1444
Hpy188III	TCNNGA	8 cut(s)	6, 205, 467, 1129, 1272, 1346, 1402, 1451
Hpy8I	GTNNAC	4 cut(s)	61, 208, 1072, 1378
Hpy99I	CGWCG	1 cut(s)	1295
HpyAV	CCTTC	5 cut(s)	343, 875, 925, 1262, 1352
HpyCH4III	ACNGT	5 cut(s)	65, 484, 509, 524, 685
HpyCH4IV	ACGT	6 cut(s)	198, 210, 656, 695, 829, 1266
HpyCH4V	TGCA	7 cut(s)	61, 394, 410, 533, 603, 715, 729
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 407, 423, 721, 941, 1016, 1041, 1286, 1576
HpyF3I	CTNAG	2 cut(s)	870, 957
HpySE526I	ACGT	6 cut(s)	198, 210, 656, 695, 829, 1266
HspAI	GCGC	1 cut(s)	1459
KflI	GGGWCCC	1 cut(s)	1315
Kpn2I	TCCGGA	3 cut(s)	5, 466, 1450
KroI	GCCGGC	1 cut(s)	575
KroNI	GCCGGC	1 cut(s)	577
KspI	CCGCGG	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	352, 444, 636
LguI	GCTCTTC	1 cut(s)	1241
LmnI	GCTCC	4 cut(s)	680, 870, 917, 968
Lsp1109I	GCAGC	5 cut(s)	9, 12, 375, 928, 1381
LweI	GCATC	8 cut(s)	3, 520, 724, 791, 831, 1028, 1456, 1563
MaeI	CTAG	5 cut(s)	740, 936, 945, 1466, 1500
MaeII	ACGT	6 cut(s)	198, 210, 656, 695, 829, 1266
MaeIII	GTNAC	4 cut(s)	97, 702, 742, 1115
MalI	GATC	3 cut(s)	354, 446, 638
MbiI	CCGCTC	1 cut(s)	912
MboI	GATC	3 cut(s)	352, 444, 636
MboII	GAAGA	3 cut(s)	280, 553, 1258
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	6 cut(s)	63, 558, 677, 851, 867, 965
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	4 cut(s)	48, 158, 178, 271
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	3 cut(s)	135, 999, 1068
MmeI	TCCRAC	2 cut(s)	404, 902
Mox20I	TGGCCA	1 cut(s)	156
Mph1103I	ATGCAT	1 cut(s)	731
MroI	TCCGGA	3 cut(s)	5, 466, 1450
MroNI	GCCGGC	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	5 cut(s)	177, 615, 900, 984, 1560
MslI	CAYNNNNRTG	2 cut(s)	734, 1188
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	317, 749
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	6 cut(s)	6, 467, 576, 813, 1422, 1451
MspR9I	CCNGG	6 cut(s)	165, 224, 294, 344, 1305, 1422
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	5 cut(s)	165, 224, 294, 344, 1305
MvnI	CGCG	2 cut(s)	317, 426
MwoI	GCNNNNNNNGC	9 cut(s)	22, 407, 423, 721, 941, 1016, 1041, 1286, 1576
NaeI	GCCGGC	1 cut(s)	577
NciI	CCSGG	1 cut(s)	1422
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	352, 444, 636
NgoMIV	GCCGGC	1 cut(s)	575
NmuCI	GTSAC	4 cut(s)	97, 702, 742, 1115
NsiI	ATGCAT	1 cut(s)	731
NspI	RCATGY	1 cut(s)	1570
NspV	TTCGAA	1 cut(s)	87
PagI	TCATGA	1 cut(s)	1401
PciSI	GCTCTTC	1 cut(s)	1241
PctI	GAATGC	1 cut(s)	410
PdiI	GCCGGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	792, 925, 1198
PflFI	GACNNNGTC	1 cut(s)	509
PflMI	CCANNNNNTGG	1 cut(s)	1389
PinAI	ACCGGT	1 cut(s)	812
PkrI	GCNGC	9 cut(s)	24, 27, 365, 943, 995, 1018, 1396, 1553, 1578
PleI	GAGTC	3 cut(s)	134, 999, 1067
PmaCI	CACGTG	1 cut(s)	1267
PmlI	CACGTG	1 cut(s)	1267
PpsI	GAGTC	3 cut(s)	134, 999, 1067
Ppu21I	YACGTR	2 cut(s)	696, 1267
PpuMI	RGGWCCY	1 cut(s)	1315
PshBI	ATTAAT	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	867
Psp5II	RGGWCCY	1 cut(s)	1315
Psp6I	CCWGG	5 cut(s)	163, 222, 292, 342, 1303
PspCI	CACGTG	1 cut(s)	1267
PspGI	CCWGG	5 cut(s)	163, 222, 292, 342, 1303
PspOMI	GGGCCC	1 cut(s)	847
PspPI	GGNCC	8 cut(s)	167, 847, 848, 856, 874, 1072, 1180, 1315
PspPPI	RGGWCCY	1 cut(s)	1315
PsuI	RGATCY	1 cut(s)	636
PsyI	GACNNNGTC	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	4 cut(s)	698, 807, 1379, 1523
RsaNI	GTAC	4 cut(s)	697, 806, 1378, 1522
RseI	CAYNNNNRTG	2 cut(s)	734, 1188
SacI	GAGCTC	1 cut(s)	867
SacII	CCGCGG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	1241
SaqAI	TTAA	5 cut(s)	177, 615, 900, 984, 1560
SatI	GCNGC	9 cut(s)	23, 26, 364, 942, 994, 1017, 1395, 1552, 1577
Sau3AI	GATC	3 cut(s)	352, 444, 636
Sau96I	GGNCC	8 cut(s)	167, 847, 848, 856, 874, 1072, 1180, 1315
SchI	GAGTC	3 cut(s)	135, 999, 1068
ScrFI	CCNGG	6 cut(s)	165, 224, 294, 344, 1305, 1422
SduI	GDGCHC	6 cut(s)	63, 558, 677, 851, 867, 965
SfaNI	GCATC	8 cut(s)	3, 520, 724, 791, 831, 1028, 1456, 1563
Sfr303I	CCGCGG	1 cut(s)	318
SfuI	TTCGAA	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	318
SinI	GGWCC	5 cut(s)	167, 856, 1072, 1180, 1315
SmiMI	CAYNNNNRTG	2 cut(s)	734, 1188
SmlI	CTYRAG	2 cut(s)	614, 1088
SmoI	CTYRAG	2 cut(s)	614, 1088
SnaBI	TACGTA	1 cut(s)	696
Sse9I	AATT	4 cut(s)	48, 158, 178, 271
SspI	AATATT	1 cut(s)	1435
SspMI	CTAG	5 cut(s)	740, 936, 945, 1466, 1500
SstI	GAGCTC	1 cut(s)	867
StyD4I	CCNGG	6 cut(s)	163, 222, 292, 342, 1303, 1420
StyI	CCWWGG	4 cut(s)	103, 1023, 1170, 1465
TaaI	ACNGT	5 cut(s)	65, 484, 509, 524, 685
TaiI	ACGT	6 cut(s)	201, 213, 659, 698, 832, 1269
TaqI	TCGA	3 cut(s)	87, 1299, 1413
TasI	AATT	4 cut(s)	48, 158, 178, 271
TatI	WGTACW	1 cut(s)	1521
TauI	GCSGC	4 cut(s)	996, 1019, 1554, 1579
TfiI	GAWTC	3 cut(s)	792, 925, 1198
Tru1I	TTAA	5 cut(s)	177, 615, 900, 984, 1560
Tru9I	TTAA	5 cut(s)	177, 615, 900, 984, 1560
TscAI	CASTG	5 cut(s)	45, 68, 126, 487, 653
TseFI	GTSAC	4 cut(s)	97, 702, 742, 1115
TseI	GCWGC	5 cut(s)	22, 25, 363, 941, 1394
Tsp45I	GTSAC	4 cut(s)	97, 702, 742, 1115
TspDTI	ATGAA	4 cut(s)	264, 584, 849, 1164
TspGWI	ACGGA	4 cut(s)	300, 908, 990, 1071
TspRI	CASTG	5 cut(s)	45, 68, 126, 487, 653
Tth111I	GACNNNGTC	1 cut(s)	509
Van91I	CCANNNNNTGG	1 cut(s)	1389
Vha464I	CTTAAG	1 cut(s)	614
VneI	GTGCAC	1 cut(s)	59
VpaK11BI	GGWCC	5 cut(s)	167, 856, 1072, 1180, 1315
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	1570
XmaJI	CCTAGG	1 cut(s)	1465
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	5 cut(s)	740, 936, 945, 1466, 1500
Zsp2I	ATGCAT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.