Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001996

Physical Location & Seq

Genomic Coordinates Reverse (-)

20537514 .. 20541063

Gene Structure 3550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG206200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGGGTTCCATGACCATGAAATTGCTGCTGTTGTGCCTCTCGATTGGCGTAATCTCAGTTGTTCATGGTGAGGATCCTTACCTTTTCTTCACATGGAATGTAACCTATGGAACCATCTCTCCCCTAGGAGTCCCCCAACAAGGCATTCTCATCAACGGCGAGTTTCCGGGACCTAACATTAACTCCACCACCAACAACAACATCGTCATCAATGTCTTCAACAACCTTGATGAACCATTGATGTTCACATGGAATGGAATCCAACAGAAGAAGAATTCATGGCAAGATGGAACACCAGGGACTATGTGCCCTATTCCTCCTGGTCAGAACTACACGTACCACTTCCAAGTGAAGGACCAGATTGGAAGCTATTTCTACTATCCCATCACCGCCATGCACAGAGCAGGTGGTGCCTTCGGTGGCCTCCGCATTAACAGTCGTCTCTTGATCCCAGTTCCATATGCTGATCCCGAGGATGACTACACCGTCCTCATCGGCGACTGGTACACCAAAAGCCACAGCAGTCTCAGGAAACAATTGGACATGGGTCGCTCCATGGGAAGGCCAGACGGTGTCCTCATTAATGGCAAGAACGCAAAGGGAGATGGCACTGATGAGCCCCTCTTCAACATGACGCCCGGAAAGACCTACAAGTTCAGAGTCTGCAATGTTGGTCTGAAGAACTCGCTCAACTTCAGGATCCAAGGCCACACAATGAAGCTTGTTGAGATGGAAGGCTCTCACGTCGTCCAGAACATATACGAGTCTCTTGATGTGCATCTCGGGCAATGCTTTTCGGCGCTTGTCACGGCTGACAAAGAACCTATGGACTACTACATGGTGGCTGACACCCGCTTCACCAAGACTATGCTCACTGGTTTAGGCATTATCCGATACACCAACGGCAAGGGTCCTGCAAGCCCCGAACTCCCTTCGCCTCCTGTGGGATTGGCTTGGTCTCTCAACCAAGCCCGCTCCTTCAGATGGAACCTCACTGCCAGTGCTGCCAGGCCTAACCCTCAAGGCTCCTATCACTATGGTGCCATCAACATCACCCGCACCATCAAGCTCGTCAACTCTGCCCGCAAGGTTGATGGCAAGCTGCGTTATGCCATAAATGGAGTCTCCCACATTGACACTGAAACTCCACTCAAGTATGCCCAGTACTTTGGAGTTGCGGACAAGGTCTTCAAGTACGACATCATCAAGGACGAGCCCTCAGCCGAAGCAGAAGACAAGATCACCTTAGCACCTAATGTTGTCAACCAAACCTACCGGGACTTTGTGGAGATTATCTTTGAGAACCACGAGAAGAGCATTCAGTCATGGCATCTGGATGGATTCGCTTTCTTTCCCACTGCCATTGAATTTGGGAGGTGGGAACCAGAGAAGAGAAGGAACTACAACCTTCTTGACGCCATAAGCCGACACACCGTCCACGTGTATCCCGGCTCATGGGCCGCCATTATGTTGACATTCGACAACGCTGGAATGTGGAACTTGAGGTCAGCACAGCCGGAGAGGGCGTACCTAGGACAACAGCTCTACCTGAGTGTTGAAAATGTCGCACGCTCTCTGAGGGACGAGTACATGCTGCTAGACCAGACACCTCTCTGTGGCATCGTCAAGGGTCTCCCTCAACCCCCTCCATACGGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

553

Amino Acids

62.07

Weight (kDa)

7.21

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	33 - 147	1.8e-39	Multicopper oxidase
Cu-oxidase	PF00394	159 - 301	8.4e-43	Multicopper oxidase
Cu-oxidase_2	PF07731	383 - 521	2.5e-25	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55560 AT1G55570 AT3G13390 AT3G13400 AT3G13400
fragaria_vesca	FvH4_3g46080 FvH4_6g20700
malus_domestica	MD03G1000200.v1.1 MD03G1000500.v1.1 MD11G1000300.v1.1 MD11G1000400.v1.1
prunus_persica	Prupe.6G000400_v2.0.a1 Prupe.6G000500_v2.0.a1
pyrus_communis	pycom03g00050 pycom11g00060
rosa_chinensis	RchiOBHm_Chr3g0476601 RchiOBHm_Chr3g0476621 RchiOBHm_Chr5g0084141
rosa_laevigata	RLG00000001981 RLG00000001982 RLG00000023759 RLG00000037086
rosa_multiflora	Rmu_co7980006.1_g000001 Rmu_sc0008241.1_g000008 Rmu_sc0008241.1_g000011 Rmu_sc0014688.1_g000001 Rmu_sc0035447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000500 Rroxscaffold_6G00405150 Rroxscaffold_6G00405170
rosa_rugosa	Rorug03G0155600 Rorug03G0155900 Rorug05G0489500
rosa_samantha	Rh3AG206200 Rh3CG232600 Rh3DG232400 Rh3DG232600 Rh5AG542100 Rh5CG589700 Rh5DG576100 Rh7DG309900
rosa_wichuraiana	Rw3G018780 Rw3G018790 Rw5G050430 Rw7G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	395
AasI	GACNNNNNNGTC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	410, 1040
AccBSI	CCGCTC	1 cut(s)	975
AciI	CCGC	8 cut(s)	390, 427, 853, 973, 1057, 1084, 1178, 1461
AclWI	GGATC	6 cut(s)	68, 81, 442, 461, 694, 707
AcsI	RAATTY	2 cut(s)	274, 1367
AcuI	CTGAAG	3 cut(s)	679, 698, 964
AcvI	CACGTG	1 cut(s)	1441
AcyI	GRCGYC	2 cut(s)	635, 1416
AfaI	GTAC	6 cut(s)	338, 506, 1166, 1196, 1529, 1589
AfiI	CCNNNNNNNGG	8 cut(s)	140, 352, 561, 944, 984, 1455, 1616, 1652
AflIII	ACRYGT	2 cut(s)	333, 1440
AgsI	TTSAA	5 cut(s)	220, 628, 1192, 1367, 1559
AhdI	GACNNNNNGTC	1 cut(s)	1433
AjiI	CACGTC	1 cut(s)	745
AjnI	CCWGG	3 cut(s)	295, 319, 1007
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AleI	CACNNNNGTG	1 cut(s)	1038
AloI	GAACNNNNNNTCC	2 cut(s)	103, 135
AluBI	AGCT	5 cut(s)	369, 721, 1069, 1102, 1543
AluI	AGCT	5 cut(s)	369, 721, 1069, 1102, 1543
Alw26I	GTCTC	6 cut(s)	446, 530, 771, 963, 1129, 1637
AlwI	GGATC	6 cut(s)	68, 81, 442, 461, 694, 707
AlwNI	CAGNNNCTG	1 cut(s)	663
Ama87I	CYCGRG	2 cut(s)	470, 782
AoxI	GGCC	6 cut(s)	421, 563, 706, 1010, 1458, 1654
ApeKI	GCWGC	4 cut(s)	25, 1004, 1102, 1594
ApoI	RAATTY	2 cut(s)	274, 1367
AseI	ATTAAT	1 cut(s)	582
AspA2I	CCTAGG	2 cut(s)	124, 1531
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	5 cut(s)	170, 355, 911, 1458, 1655
AsuC2I	CCSGG	4 cut(s)	168, 639, 1277, 1449
AsuHPI	GGTGA	5 cut(s)	80, 379, 850, 1045, 1234
AvaI	CYCGRG	2 cut(s)	470, 782
AvaII	GGWCC	3 cut(s)	170, 355, 911
AvrII	CCTAGG	2 cut(s)	124, 1531
BaeGI	GKGCMC	1 cut(s)	311
BamHI	GGATCC	2 cut(s)	73, 699
BanI	GGYRCC	2 cut(s)	410, 1040
BanII	GRGCYC	2 cut(s)	621, 1218
BauI	CACGAG	1 cut(s)	1307
BbrPI	CACGTG	1 cut(s)	1441
BbsI	GAAGAC	3 cut(s)	208, 1180, 1239
BbvCI	CCTCAGC	1 cut(s)	1219
BbvI	GCAGC	4 cut(s)	12, 991, 1089, 1581
BceAI	ACGGC	3 cut(s)	172, 825, 919
BciT130I	CCWGG	3 cut(s)	297, 321, 1009
BciVI	GTATCC	1 cut(s)	1455
BcnI	CCSGG	4 cut(s)	168, 639, 1277, 1449
BcoDI	GTCTC	6 cut(s)	446, 530, 771, 963, 1129, 1637
BfaI	CTAG	3 cut(s)	125, 1532, 1598
BfoI	RGCGCY	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	1455
BisI	GCNGC	5 cut(s)	26, 1005, 1103, 1461, 1595
BlnI	CCTAGG	2 cut(s)	124, 1531
BlsI	GCNGC	5 cut(s)	27, 1006, 1104, 1462, 1596
BmcAI	AGTACT	1 cut(s)	1166
Bme1390I	CCNGG	7 cut(s)	168, 297, 321, 639, 1009, 1277, 1449
Bme18I	GGWCC	3 cut(s)	170, 355, 911
BmeRI	GACNNNNNGTC	1 cut(s)	1433
BmeT110I	CYCGRG	2 cut(s)	470, 782
BmgBI	CACGTC	1 cut(s)	745
BmgT120I	GGNCC	5 cut(s)	170, 355, 911, 1458, 1655
BmrFI	CCNGG	7 cut(s)	168, 297, 321, 639, 1009, 1277, 1449
BmrI	ACTGGG	2 cut(s)	446, 1156
BmsI	GCATC	3 cut(s)	787, 1339, 1629
BmuI	ACTGGG	2 cut(s)	446, 1156
BoxI	GACNNNNGTC	1 cut(s)	546
BpiI	GAAGAC	3 cut(s)	208, 1180, 1239
Bpu10I	CCTNAGC	2 cut(s)	1219, 1246
BpuEI	CTTGAG	3 cut(s)	1005, 1136, 1522
BpuMI	CCSGG	4 cut(s)	168, 639, 1277, 1449
BsaAI	YACGTR	2 cut(s)	336, 1441
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	2 cut(s)	635, 1416
BsaI	GGTCTC	2 cut(s)	963, 1637
BsaJI	CCNNGG	6 cut(s)	124, 296, 471, 555, 703, 1531
BsaXI	ACNNNNNCTCC	8 cut(s)	103, 133, 167, 197, 1129, 1159, 1511, 1541
Bsc4I	CCNNNNNNNGG	8 cut(s)	140, 352, 561, 944, 984, 1455, 1616, 1652
Bse1I	ACTGG	5 cut(s)	452, 506, 880, 999, 1162
Bse3DI	GCAATG	2 cut(s)	673, 794
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	3 cut(s)	297, 321, 1009
BseDI	CCNNGG	6 cut(s)	124, 296, 471, 555, 703, 1531
BseGI	GGATG	2 cut(s)	481, 1342
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	8 cut(s)	140, 352, 561, 944, 984, 1455, 1616, 1652
BseMI	GCAATG	2 cut(s)	673, 794
BseMII	CTCAG	5 cut(s)	69, 541, 1233, 1541, 1568
BseNI	ACTGG	5 cut(s)	452, 506, 880, 999, 1162
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	4 cut(s)	12, 991, 1089, 1581
BshFI	GGCC	6 cut(s)	423, 565, 708, 1012, 1460, 1656
BshNI	GGYRCC	2 cut(s)	410, 1040
BsiHKCI	CYCGRG	2 cut(s)	470, 782
BsiSI	CCGG	5 cut(s)	167, 639, 1276, 1449, 1517
BslFI	GGGAC	5 cut(s)	116, 183, 313, 1292, 1595
BslI	CCNNNNNNNGG	8 cut(s)	140, 352, 561, 944, 984, 1455, 1616, 1652
BsmAI	GTCTC	6 cut(s)	446, 530, 771, 963, 1129, 1637
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	5 cut(s)	116, 183, 313, 1292, 1595
BsmI	GAATGC	2 cut(s)	144, 1317
BsnI	GGCC	6 cut(s)	423, 565, 708, 1012, 1460, 1656
Bso31I	GGTCTC	2 cut(s)	963, 1637
BsoBI	CYCGRG	2 cut(s)	470, 782
Bsp1286I	GDGCHC	3 cut(s)	311, 621, 1218
Bsp143I	GATC	5 cut(s)	73, 447, 466, 699, 1239
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	8 cut(s)	390, 427, 853, 973, 1057, 1084, 1178, 1461
BspANI	GGCC	6 cut(s)	423, 565, 708, 1012, 1460, 1656
BspCNI	CTCAG	5 cut(s)	68, 540, 1232, 1542, 1569
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	6 cut(s)	68, 81, 442, 461, 694, 707
BspQI	GCTCTTC	1 cut(s)	1307
BspT107I	GGYRCC	2 cut(s)	410, 1040
BspTNI	GGTCTC	2 cut(s)	963, 1637
BsrBI	CCGCTC	1 cut(s)	975
BsrDI	GCAATG	2 cut(s)	673, 794
BsrI	ACTGG	5 cut(s)	452, 506, 880, 999, 1162
BssECI	CCNNGG	6 cut(s)	124, 296, 471, 555, 703, 1531
BssMI	GATC	5 cut(s)	73, 447, 466, 699, 1239
BssNI	GRCGYC	2 cut(s)	635, 1416
BssSI	CACGAG	1 cut(s)	1307
BssT1I	CCWWGG	4 cut(s)	124, 555, 703, 1531
Bst2BI	CACGAG	1 cut(s)	1307
Bst2UI	CCWGG	3 cut(s)	297, 321, 1009
Bst4CI	ACNGT	4 cut(s)	437, 487, 572, 1435
Bst6I	CTCTTC	3 cut(s)	629, 1307, 1385
BstACI	GRCGYC	2 cut(s)	635, 1416
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBAI	YACGTR	2 cut(s)	336, 1441
BstC8I	GCNNGC	5 cut(s)	919, 973, 1084, 1100, 1570
BstDEI	CTNAG	6 cut(s)	55, 527, 1219, 1246, 1550, 1577
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	481, 1342
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	5 cut(s)	76, 450, 469, 702, 1242
BstMAI	GTCTC	6 cut(s)	446, 530, 771, 963, 1129, 1637
BstMBI	GATC	5 cut(s)	73, 447, 466, 699, 1239
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 784, 1004
BstNI	CCWGG	3 cut(s)	297, 321, 1009
BstNSI	RCATGY	1 cut(s)	1594
BstPAI	GACNNNNGTC	1 cut(s)	546
BstSCI	CCNGG	7 cut(s)	166, 295, 319, 637, 1007, 1275, 1447
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	4 cut(s)	12, 991, 1089, 1581
BstV2I	GAAGAC	3 cut(s)	208, 1180, 1239
BstX2I	RGATCY	2 cut(s)	73, 699
BstXI	CCANNNNNNTGG	1 cut(s)	1169
BstYI	RGATCY	2 cut(s)	73, 699
BsuI	GTATCC	1 cut(s)	1455
BsuRI	GGCC	6 cut(s)	423, 565, 708, 1012, 1460, 1656
BtgI	CCRYGG	1 cut(s)	555
BtrI	CACGTC	1 cut(s)	745
BtsCI	GGATG	2 cut(s)	481, 1342
BtsI	GCAGTG	2 cut(s)	993, 1356
BtsIMutI	CAGTG	6 cut(s)	609, 873, 993, 1006, 1137, 1356
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	5 cut(s)	919, 973, 1084, 1100, 1570
CaiI	CAGNNNCTG	1 cut(s)	663
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	5 cut(s)	170, 355, 911, 1458, 1655
CseI	GACGC	2 cut(s)	643, 1424
Csp6I	GTAC	6 cut(s)	337, 505, 1165, 1195, 1528, 1588
CspCI	CAANNNNNGTGG	2 cut(s)	1345, 1380
CviQI	GTAC	6 cut(s)	337, 505, 1165, 1195, 1528, 1588
DdeI	CTNAG	6 cut(s)	55, 527, 1219, 1246, 1550, 1577
DpnI	GATC	5 cut(s)	75, 449, 468, 701, 1241
DpnII	GATC	5 cut(s)	73, 447, 466, 699, 1239
DrdI	GACNNNNNNGTC	1 cut(s)	485
DriI	GACNNNNNGTC	1 cut(s)	1433
DseDI	GACNNNNNNGTC	1 cut(s)	485
Eam1104I	CTCTTC	3 cut(s)	629, 1307, 1385
Eam1105I	GACNNNNNGTC	1 cut(s)	1433
EarI	CTCTTC	3 cut(s)	629, 1307, 1385
Eco130I	CCWWGG	4 cut(s)	124, 555, 703, 1531
Eco147I	AGGCCT	1 cut(s)	1012
Eco24I	GRGCYC	2 cut(s)	621, 1218
Eco31I	GGTCTC	2 cut(s)	963, 1637
Eco47I	GGWCC	3 cut(s)	170, 355, 911
Eco57I	CTGAAG	3 cut(s)	679, 698, 964
Eco72I	CACGTG	1 cut(s)	1441
Eco88I	CYCGRG	2 cut(s)	470, 782
EcoO109I	RGGNCCY	2 cut(s)	170, 911
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	3 cut(s)	295, 319, 1007
EcoT14I	CCWWGG	4 cut(s)	124, 555, 703, 1531
EcoT38I	GRGCYC	2 cut(s)	621, 1218
ErhI	CCWWGG	4 cut(s)	124, 555, 703, 1531
Esp3I	CGTCTC	1 cut(s)	446
FalI	AAGNNNNNCTT	2 cut(s)	1229, 1261
FaqI	GGGAC	5 cut(s)	116, 183, 313, 1292, 1595
FauI	CCCGC	4 cut(s)	860, 980, 1064, 1091
FauNDI	CATATG	1 cut(s)	460
Fnu4HI	GCNGC	5 cut(s)	26, 1005, 1103, 1461, 1595
FokI	GGATG	2 cut(s)	488, 1349
FriOI	GRGCYC	2 cut(s)	621, 1218
Fsp4HI	GCNGC	5 cut(s)	26, 1005, 1103, 1461, 1595
FspBI	CTAG	3 cut(s)	125, 1532, 1598
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	5 cut(s)	26, 1005, 1103, 1461, 1595
HaeII	RGCGCY	1 cut(s)	803
HaeIII	GGCC	6 cut(s)	423, 565, 708, 1012, 1460, 1656
HapII	CCGG	5 cut(s)	167, 639, 1276, 1449, 1517
HgaI	GACGC	2 cut(s)	643, 1424
HhaI	GCGC	1 cut(s)	802
Hin1I	GRCGYC	2 cut(s)	635, 1416
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	3 cut(s)	1075, 1264, 1473
HindII	GTYRAC	3 cut(s)	1075, 1264, 1473
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	6 cut(s)	129, 258, 660, 764, 1122, 1341
HpaII	CCGG	5 cut(s)	167, 639, 1276, 1449, 1517
HphI	GGTGA	5 cut(s)	80, 379, 850, 1045, 1234
Hpy166II	GTNNAC	6 cut(s)	246, 507, 1075, 1264, 1438, 1473
Hpy188I	TCNGA	6 cut(s)	327, 659, 678, 893, 983, 1578
Hpy188III	TCNNGA	9 cut(s)	40, 445, 470, 529, 697, 751, 770, 1334, 1412
Hpy8I	GTNNAC	6 cut(s)	246, 507, 1075, 1264, 1438, 1473
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	8 cut(s)	346, 424, 555, 728, 942, 988, 1389, 1418
HpyCH4III	ACNGT	4 cut(s)	437, 487, 572, 1435
HpyCH4IV	ACGT	3 cut(s)	335, 744, 1440
HpyCH4V	TGCA	4 cut(s)	397, 666, 778, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 784, 1004
HpyF3I	CTNAG	6 cut(s)	55, 527, 1219, 1246, 1550, 1577
HpySE526I	ACGT	3 cut(s)	335, 744, 1440
Hsp92I	GRCGYC	2 cut(s)	635, 1416
HspAI	GCGC	1 cut(s)	800
Kzo9I	GATC	5 cut(s)	73, 447, 466, 699, 1239
LguI	GCTCTTC	1 cut(s)	1307
LmnI	GCTCC	3 cut(s)	557, 980, 1031
Lsp1109I	GCAGC	4 cut(s)	12, 991, 1089, 1581
LweI	GCATC	3 cut(s)	787, 1339, 1629
MaeI	CTAG	3 cut(s)	125, 1532, 1598
MaeII	ACGT	3 cut(s)	335, 744, 1440
MaeIII	GTNAC	2 cut(s)	100, 805
MalI	GATC	5 cut(s)	75, 449, 468, 701, 1241
MbiI	CCGCTC	1 cut(s)	975
MboI	GATC	5 cut(s)	73, 447, 466, 699, 1239
MfeI	CAATTG	1 cut(s)	536
MflI	RGATCY	2 cut(s)	73, 699
MhlI	GDGCHC	3 cut(s)	311, 621, 1218
MluCI	AATT	4 cut(s)	20, 274, 536, 1367
MlyI	GAGTC	4 cut(s)	138, 669, 773, 1131
MmeI	TCCRAC	1 cut(s)	286
MseI	TTAA	4 cut(s)	180, 432, 582, 1660
MslI	CAYNNNNRTG	4 cut(s)	14, 392, 1038, 1335
MspI	CCGG	5 cut(s)	167, 639, 1276, 1449, 1517
MspR9I	CCNGG	7 cut(s)	168, 297, 321, 639, 1009, 1277, 1449
MunI	CAATTG	1 cut(s)	536
Mva1269I	GAATGC	2 cut(s)	144, 1317
MvaI	CCWGG	3 cut(s)	297, 321, 1009
MwoI	GCNNNNNNNGC	3 cut(s)	410, 784, 1004
NciI	CCSGG	4 cut(s)	168, 639, 1277, 1449
NcoI	CCATGG	1 cut(s)	555
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	5 cut(s)	73, 447, 466, 699, 1239
NmuCI	GTSAC	1 cut(s)	805
NspI	RCATGY	1 cut(s)	1594
OliI	CACNNNNGTG	1 cut(s)	1038
PaqCI	CACCTGC	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	1012
PciSI	GCTCTTC	1 cut(s)	1307
PctI	GAATGC	2 cut(s)	144, 1317
PfeI	GAWTC	2 cut(s)	258, 1341
PflFI	GACNNNGTC	2 cut(s)	572, 1184
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	5 cut(s)	27, 1006, 1104, 1462, 1596
PleI	GAGTC	4 cut(s)	137, 668, 772, 1130
PmaCI	CACGTG	1 cut(s)	1441
PmlI	CACGTG	1 cut(s)	1441
PpsI	GAGTC	4 cut(s)	137, 668, 772, 1130
Ppu21I	YACGTR	2 cut(s)	336, 1441
PpuMI	RGGWCCY	2 cut(s)	170, 911
PshAI	GACNNNNGTC	1 cut(s)	546
PshBI	ATTAAT	1 cut(s)	582
Psp5II	RGGWCCY	2 cut(s)	170, 911
Psp6I	CCWGG	3 cut(s)	295, 319, 1007
PspCI	CACGTG	1 cut(s)	1441
PspGI	CCWGG	3 cut(s)	295, 319, 1007
PspPI	GGNCC	5 cut(s)	170, 355, 911, 1458, 1655
PspPPI	RGGWCCY	2 cut(s)	170, 911
PsrI	GAACNNNNNNTAC	2 cut(s)	320, 352
PstNI	CAGNNNCTG	1 cut(s)	663
PsuI	RGATCY	2 cut(s)	73, 699
PsyI	GACNNNGTC	2 cut(s)	572, 1184
RsaI	GTAC	6 cut(s)	338, 506, 1166, 1196, 1529, 1589
RsaNI	GTAC	6 cut(s)	337, 505, 1165, 1195, 1528, 1588
RseI	CAYNNNNRTG	4 cut(s)	14, 392, 1038, 1335
SapI	GCTCTTC	1 cut(s)	1307
SaqAI	TTAA	4 cut(s)	180, 432, 582, 1660
SatI	GCNGC	5 cut(s)	26, 1005, 1103, 1461, 1595
Sau3AI	GATC	5 cut(s)	73, 447, 466, 699, 1239
Sau96I	GGNCC	5 cut(s)	170, 355, 911, 1458, 1655
ScaI	AGTACT	1 cut(s)	1166
SchI	GAGTC	4 cut(s)	138, 669, 773, 1131
ScrFI	CCNGG	7 cut(s)	168, 297, 321, 639, 1009, 1277, 1449
SduI	GDGCHC	3 cut(s)	311, 621, 1218
SfaNI	GCATC	3 cut(s)	787, 1339, 1629
SinI	GGWCC	3 cut(s)	170, 355, 911
SmiMI	CAYNNNNRTG	4 cut(s)	14, 392, 1038, 1335
SmlI	CTYRAG	3 cut(s)	1020, 1151, 1501
SmoI	CTYRAG	3 cut(s)	1020, 1151, 1501
Sse9I	AATT	4 cut(s)	20, 274, 536, 1367
SseBI	AGGCCT	1 cut(s)	1012
SsiI	CCGC	8 cut(s)	390, 427, 853, 973, 1057, 1084, 1178, 1461
SspMI	CTAG	3 cut(s)	125, 1532, 1598
StuI	AGGCCT	1 cut(s)	1012
StyD4I	CCNGG	7 cut(s)	166, 295, 319, 637, 1007, 1275, 1447
StyI	CCWWGG	4 cut(s)	124, 555, 703, 1531
TaaI	ACNGT	4 cut(s)	437, 487, 572, 1435
TaiI	ACGT	3 cut(s)	338, 747, 1443
TaqI	TCGA	2 cut(s)	41, 1479
TasI	AATT	4 cut(s)	20, 274, 536, 1367
TatI	WGTACW	2 cut(s)	1164, 1587
TauI	GCSGC	1 cut(s)	1463
TfiI	GAWTC	2 cut(s)	258, 1341
Tru1I	TTAA	4 cut(s)	180, 432, 582, 1660
Tru9I	TTAA	4 cut(s)	180, 432, 582, 1660
TscAI	CASTG	6 cut(s)	616, 880, 1000, 1006, 1144, 1363
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	4 cut(s)	25, 1004, 1102, 1594
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	5 cut(s)	32, 53, 246, 267, 731
TspRI	CASTG	6 cut(s)	616, 880, 1000, 1006, 1144, 1363
Tth111I	GACNNNGTC	2 cut(s)	572, 1184
VpaK11BI	GGWCC	3 cut(s)	170, 355, 911
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	2 cut(s)	274, 1367
XceI	RCATGY	1 cut(s)	1594
XmaJI	CCTAGG	2 cut(s)	124, 1531
XspI	CTAG	3 cut(s)	125, 1532, 1598
ZrmI	AGTACT	1 cut(s)	1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.