Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000147.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

3841 .. 4613

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggtggctgcatggctcgcacgcttcaagctgccactagggccggaggtggtgcggtacatgttggatgctgactcacacgcgtggagcatgaggaagagcaaagcgaattggtttcggattgtggcgattctggcgtggttagttgggttactgaagtggttggatgatatacggaggtggaggaactcggtgactgcggttttggtgcacatgttgtatttggttctggtttggtacctgtatttgataatcccgactgggtttctatatgtgtttctgattggggtttggtactaccggttcaggcccaagataccggctggaatggacctctggttctctcaggcggatacagtcgaccccgatgaacttgatgaagagttcgacactttctcggagagaagtgaggcgtttgggatgaaatgcactatgaatcgggacccaggaagggcagagcagcggcggtgctgcttggtgccaccggccaatgggtcaatggtaggttgggaagatgaaaagtgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

175

Amino Acids

20.55

Weight (kDa)

6.73

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRT_C	PF08372	86 - 135	1.5e-14	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	237, 478
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	83
AciI	CCGC	5 cut(s)	55, 200, 350, 463, 466
AcoI	YGGCCR	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	3 cut(s)	59, 239, 296
AfiI	CCNNNNNNNGG	2 cut(s)	451, 491
AflIII	ACRYGT	3 cut(s)	60, 81, 213
AgeI	ACCGGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	445
AleI	CACNNNNGTG	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	209
AoxI	GGCC	3 cut(s)	41, 308, 486
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	4 cut(s)	8, 31, 460, 471
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AsiGI	ACCGGT	1 cut(s)	300
Asp718I	GGTACC	1 cut(s)	237
AspS9I	GGNCC	4 cut(s)	41, 309, 331, 442
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	331, 442
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	237, 478
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	18, 458, 472
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	38, 526
BfuI	GTATCC	1 cut(s)	346
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
BlsI	GCNGC	5 cut(s)	10, 33, 462, 465, 473
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	2 cut(s)	331, 442
BmgT120I	GGNCC	4 cut(s)	41, 309, 331, 442
BmiI	GGNNCC	4 cut(s)	239, 443, 444, 480
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 491
Bse118I	RCCGGY	3 cut(s)	300, 319, 484
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	3 cut(s)	73, 172, 426
BseLI	CCNNNNNNNGG	2 cut(s)	451, 491
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	18, 458, 472
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	43, 310, 488
BshNI	GGYRCC	2 cut(s)	237, 478
BshTI	ACCGGT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	44, 301, 320, 485
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	451, 491
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	43, 310, 488
Bsp1286I	GDGCHC	1 cut(s)	213
BspACI	CCGC	5 cut(s)	55, 200, 350, 463, 466
BspANI	GGCC	3 cut(s)	43, 310, 488
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	4 cut(s)	239, 443, 444, 480
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	2 cut(s)	237, 478
BsrFI	RCCGGY	3 cut(s)	300, 319, 484
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	3 cut(s)	300, 319, 484
BssECI	CCNNGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	92, 375
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	73, 172, 426
BstFNI	CGCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	64, 217
BstSCI	CCNGG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	18, 458, 472
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	43, 310, 488
BtsCI	GGATG	3 cut(s)	73, 172, 426
Cac8I	GCNNGC	2 cut(s)	18, 22
Cfr10I	RCCGGY	3 cut(s)	300, 319, 484
Cfr13I	GGNCC	4 cut(s)	41, 309, 331, 442
Csp6I	GTAC	3 cut(s)	58, 238, 295
CspAI	ACCGGT	1 cut(s)	300
CviAII	CATG	4 cut(s)	12, 61, 91, 214
CviJI	RGCY	7 cut(s)	8, 16, 31, 43, 310, 323, 488
CviKI_1	RGCY	7 cut(s)	8, 16, 31, 43, 310, 323, 488
CviQI	GTAC	3 cut(s)	58, 238, 295
DdeI	CTNAG	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	2 cut(s)	92, 375
EarI	CTCTTC	2 cut(s)	92, 375
EciI	GGCGGA	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	331, 442
Eco57I	CTGAAG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	4 cut(s)	15, 64, 94, 217
FaiI	YATR	8 cut(s)	13, 62, 92, 173, 215, 271, 273, 434
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	4 cut(s)	11, 60, 90, 213
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
FokI	GGATG	3 cut(s)	80, 179, 433
Fsp4HI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
FspBI	CTAG	2 cut(s)	38, 526
GluI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
HaeIII	GGCC	3 cut(s)	43, 310, 488
HapII	CCGG	4 cut(s)	44, 301, 320, 485
Hin1II	CATG	4 cut(s)	15, 64, 94, 217
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	74, 130, 436
HpaII	CCGG	4 cut(s)	44, 301, 320, 485
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	211, 361
Hpy188I	TCNGA	3 cut(s)	120, 282, 400
Hpy188III	TCNNGA	2 cut(s)	256, 440
Hpy8I	GTNNAC	2 cut(s)	211, 361
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	11, 211, 429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	15, 64, 94, 217
KflI	GGGWCCC	1 cut(s)	442
KpnI	GGTACC	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	3 cut(s)	18, 458, 472
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	38, 526
MaeIII	GTNAC	2 cut(s)	150, 193
MboII	GAAGA	3 cut(s)	109, 392, 524
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	109
MluI	ACGCGT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	45, 144
MnlI	CCTC	6 cut(s)	40, 87, 171, 177, 344, 403
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	4 cut(s)	44, 301, 320, 485
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
NlaIII	CATG	4 cut(s)	15, 64, 94, 217
NlaIV	GGNNCC	4 cut(s)	239, 443, 444, 480
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	2 cut(s)	64, 217
OliI	CACNNNNGTG	1 cut(s)	82
PciI	ACATGT	2 cut(s)	60, 213
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	130, 436
PinAI	ACCGGT	1 cut(s)	300
PkrI	GCNGC	5 cut(s)	10, 33, 462, 465, 473
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	2 cut(s)	60, 213
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	4 cut(s)	239, 443, 444, 480
PspPI	GGNCC	4 cut(s)	41, 309, 331, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
RsaI	GTAC	3 cut(s)	59, 239, 296
RsaNI	GTAC	3 cut(s)	58, 238, 295
RseI	CAYNNNNRTG	1 cut(s)	82
SalI	GTCGAC	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
Sau96I	GGNCC	4 cut(s)	41, 309, 331, 442
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	33, 51, 182, 243, 336, 508
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	2 cut(s)	331, 442
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	5 cut(s)	55, 200, 350, 463, 466
SspMI	CTAG	2 cut(s)	38, 526
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	360, 387
TasI	AATT	1 cut(s)	109
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	2 cut(s)	130, 436
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	4 cut(s)	8, 31, 460, 471
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	4 cut(s)	384, 393, 437, 449
TspGWI	ACGGA	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	331, 442
XceI	RCATGY	2 cut(s)	64, 217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	2 cut(s)	38, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.