Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000177.1

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Reverse (-)

69740 .. 77216

Gene Structure 7477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgtacaatccgacaccacagaggtgtaggcgacgacgagacaaggcttttaccggtggtccgccgcgaagaagtggccggaaactgaagttccggtcgggtcatcgttttcggaccggtggcgtggcgttgtggattctatttcgacggcggcacgggtcgtggggtgtgtgggtagataaggtgcggttccgtggcggtgtggtgtgcggcgacacaggtcgaggctttagattgacaagcagtgaagctcttacactcagtactcctatctatgacactggtttcctcaacaggactagtttcccagcaggtttcatatttgggacaacttcagccaagcattttcgggactatgcggagctgtgttacaaggaatttggtgatcgggtaaagcactggatgacgttgaatcagccatgggcatacagtaatggtggttatgcaaccgggacaaaggcaccaggacggtgttctgcgtggcagcagctaaattgcttcggcggggattcgggtactgaaccatatttggtggcacaccacctactcctttctcatgcagctgctgtaaagttgtacaagcagaaatatctggtcaatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

201

Amino Acids

22.78

Weight (kDa)

10.53

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	113 - 197	2.2e-18	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	1 cut(s)	67
AciI	CCGC	8 cut(s)	62, 65, 151, 187, 198, 210, 359, 504
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	2 cut(s)	107, 318
AfaI	GTAC	4 cut(s)	5, 265, 517, 578
AgeI	ACCGGT	2 cut(s)	53, 116
AgsI	TTSAA	1 cut(s)	412
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	463
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	251, 364, 490, 563, 603
AluI	AGCT	5 cut(s)	251, 364, 490, 563, 603
Alw26I	GTCTC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	4 cut(s)	484, 487, 560, 563
ApoI	RAATTY	1 cut(s)	377
AsiGI	ACCGGT	2 cut(s)	53, 116
AspS9I	GGNCC	2 cut(s)	59, 114
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	59, 114
BanI	GGYRCC	1 cut(s)	460
BbvI	GCAGC	4 cut(s)	496, 499, 550, 572
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	2 cut(s)	300, 604
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	7 cut(s)	65, 152, 211, 485, 488, 561, 564
BlsI	GCNGC	7 cut(s)	66, 153, 212, 486, 489, 562, 565
BmcAI	AGTACT	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	451, 465
Bme18I	GGWCC	2 cut(s)	59, 114
BmgT120I	GGNCC	2 cut(s)	59, 114
BmiI	GGNNCC	2 cut(s)	191, 462
BmrFI	CCNGG	2 cut(s)	451, 465
BoxI	GACNNNNGTC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	451
BsaJI	CCNNGG	2 cut(s)	193, 419
BsaWI	WCCGGW	3 cut(s)	53, 93, 116
Bse118I	RCCGGY	2 cut(s)	53, 116
Bse1I	ACTGG	2 cut(s)	286, 404
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	193, 419
BseGI	GGATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	2 cut(s)	286, 404
BseXI	GCAGC	4 cut(s)	496, 499, 550, 572
BseYI	CCCAGC	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	460
BshTI	ACCGGT	2 cut(s)	53, 116
BsiEI	CGRYCG	1 cut(s)	98
BsiSI	CCGG	5 cut(s)	54, 79, 94, 117, 450
BslFI	GGGAC	3 cut(s)	340, 365, 466
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	3 cut(s)	340, 365, 466
BsnI	GGCC	1 cut(s)	78
Bsp1407I	TGTACA	2 cut(s)	3, 576
Bsp143I	GATC	1 cut(s)	385
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	8 cut(s)	62, 65, 151, 187, 198, 210, 359, 504
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	191, 462
BspMI	ACCTGC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	460
BsrFI	RCCGGY	2 cut(s)	53, 116
BsrGI	TGTACA	2 cut(s)	3, 576
BsrI	ACTGG	2 cut(s)	286, 404
BssAI	RCCGGY	2 cut(s)	53, 116
BssECI	CCNNGG	2 cut(s)	193, 419
BssMI	GATC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	431, 471
BstAUI	TGTACA	2 cut(s)	3, 576
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	2 cut(s)	193, 419
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	385
BstMCI	CGRYCG	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	465
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	449, 463
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	496, 499, 550, 572
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	2 cut(s)	193, 419
BtsCI	GGATG	1 cut(s)	408
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	3 cut(s)	250, 279, 397
BveI	ACCTGC	1 cut(s)	302
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr10I	RCCGGY	2 cut(s)	53, 116
Cfr13I	GGNCC	2 cut(s)	59, 114
CpoI	CGGWCCG	1 cut(s)	114
Csp6I	GTAC	4 cut(s)	4, 264, 516, 577
CspAI	ACCGGT	2 cut(s)	53, 116
CspI	CGGWCCG	1 cut(s)	114
CviAII	CATG	2 cut(s)	420, 557
CviQI	GTAC	4 cut(s)	4, 264, 516, 577
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	59, 114
Eco57I	CTGAAG	2 cut(s)	107, 318
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	2 cut(s)	423, 560
FaiI	YATR	8 cut(s)	276, 320, 357, 421, 427, 444, 526, 558
FaqI	GGGAC	3 cut(s)	340, 365, 466
FatI	CATG	2 cut(s)	419, 556
FauI	CCCGC	1 cut(s)	497
Fnu4HI	GCNGC	7 cut(s)	65, 152, 211, 485, 488, 561, 564
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	7 cut(s)	65, 152, 211, 485, 488, 561, 564
FspBI	CTAG	2 cut(s)	300, 604
GluI	GCNGC	7 cut(s)	65, 152, 211, 485, 488, 561, 564
GsaI	CCCAGC	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	5 cut(s)	54, 79, 94, 117, 450
Hin1II	CATG	2 cut(s)	423, 560
HinfI	GANTC	3 cut(s)	136, 412, 509
HpaII	CCGG	5 cut(s)	54, 79, 94, 117, 450
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	12, 114
Hpy188III	TCNNGA	1 cut(s)	350
Hpy99I	CGWCG	3 cut(s)	36, 39, 150
HpyCH4III	ACNGT	2 cut(s)	431, 471
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	2 cut(s)	446, 560
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	423, 560
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	4 cut(s)	496, 499, 550, 572
MaeI	CTAG	2 cut(s)	300, 604
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	1 cut(s)	81
MluCI	AATT	2 cut(s)	377, 493
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	15, 218, 299
MslI	CAYNNNNRTG	1 cut(s)	22
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	5 cut(s)	54, 79, 94, 117, 450
MspR9I	CCNGG	2 cut(s)	451, 465
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	67
NciI	CCSGG	1 cut(s)	451
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	2 cut(s)	423, 560
NlaIV	GGNNCC	2 cut(s)	191, 462
OliI	CACNNNNGTG	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	136, 412, 509
PinAI	ACCGGT	2 cut(s)	53, 116
PkrI	GCNGC	7 cut(s)	66, 153, 212, 486, 489, 562, 565
PshAI	GACNNNNGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	191, 462
PspPI	GGNCC	2 cut(s)	59, 114
PstNI	CAGNNNCTG	1 cut(s)	566
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	4 cut(s)	5, 265, 517, 578
RsaNI	GTAC	4 cut(s)	4, 264, 516, 577
RseI	CAYNNNNRTG	1 cut(s)	22
Rsr2I	CGGWCCG	1 cut(s)	114
RsrII	CGGWCCG	1 cut(s)	114
SatI	GCNGC	7 cut(s)	65, 152, 211, 485, 488, 561, 564
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	2 cut(s)	59, 114
ScaI	AGTACT	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	451, 465
SinI	GGWCC	2 cut(s)	59, 114
SmiMI	CAYNNNNRTG	1 cut(s)	22
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	2 cut(s)	377, 493
SsiI	CCGC	8 cut(s)	62, 65, 151, 187, 198, 210, 359, 504
SspMI	CTAG	2 cut(s)	300, 604
StyD4I	CCNGG	2 cut(s)	449, 463
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	431, 471
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	145, 223
TasI	AATT	2 cut(s)	377, 493
TatI	WGTACW	3 cut(s)	3, 263, 576
TauI	GCSGC	3 cut(s)	67, 154, 213
TfiI	GAWTC	3 cut(s)	136, 412, 509
TscAI	CASTG	3 cut(s)	250, 286, 404
TseI	GCWGC	4 cut(s)	484, 487, 560, 563
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	3 cut(s)	250, 286, 404
VpaK11BI	GGWCC	2 cut(s)	59, 114
XapI	RAATTY	1 cut(s)	377
XspI	CTAG	2 cut(s)	300, 604
ZrmI	AGTACT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.