Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000433.1

Orthogroup ID

OG0006969

Physical Location & Seq

Genomic Coordinates Forward (+)

126461 .. 128240

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

atggtgcggggattccggtgggtgggaatagggttaaggtgtgtggctgattttgttggtagaatggagcaagtcactgaagatctggcccaaaaattaaccattacggaggcagcagatcttgaagtcgttaagctcgcagatgtcgagcagttggcgttaaaaaaattctggttggtgggtagattgttaactgagaaagagtttaatagggaggcgttcaagagcactatgaagaaaatttggaggacgaggggggaggtgtccatagttgaatgggaagggtccgaccgattcatgttttctttcaaaactgattttgatcggcgaatggtgatgaggggaagcccatggaatcttgacaatgctttgttattgctcttagcgactaatgggagatcagatcagtgttccgttcctcttgagatgcagaacttctggattcgagttcgaggacttcctgcagattttctttctccggtgatggctagaagaataggaggtatattggggtactttgttgatctggacccgaagaaaaaaagtgattttgtaggtagtctgccgcaaattcgagtgggactggatgtaacccaaccacttcaaagatgggtcaaaatggatttagggtttagtgaggaaaccaaattgcaattggaatatgaagagctaccctacttttgtttctactgtggatgcctctcacatgttagctctaattgtccttggcataaagcagggaagatcaaggagatgcagtatggaaggtggaaaacccttgcgaagaatgtgttttgcattgatccggacggacaactgaagggtagggcatttgggttcgtcagggagaaacctcactggaaggtgaaagatccggagccgaccctgattggatctgttcattcatgtgatgagtggggtggagagatggagattcaggaaactagaatggaagttgatgggacgatggttacgatggttgtgatgcagctggaagcaaagcgaaggcgctttggacacaaaagtccaaagcgcgtgaggggggatgttttgccagaagttacatccaagcaagatgattgcatggaggcgggaatggaagagggtggcctaaaggtggtaaggttgactacaaactcctcaatagtggaagtgcgcgcaggtaaaagtcctagcaagctatgtcgtagtaatggggttagcatgcaggaaactctgacttcattggacacaagtgtgttgaagaaaaaaggaaagaagatgattgtagggcagacaacagagcagagggacataggactgatcacgagaaatgatcgctttgagctagaatgtgcagggtttggggaacccgcacaagtgcaatcccctgatgtgttctttattatggaaataaagaaaaggaagaaagctatggagaagctatgtggtaaactcggatataaagcttgttttgcagtgggaagtgtgggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1

Protein Analysis

491

Amino Acids

55.8

Weight (kDa)

9.01

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	56 - 127	5.9e-09	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	195 - 242	1.5e-10	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006969)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008443
rosa_multiflora	Rmu_sc0000433.1_g000030
rosa_roxburghii	Rroxscaffold_3G00229450
rosa_samantha	Rh1BG120000 Rh2BG060500 Rh2CG062500 Rh2DG239300 Rh2DG288100 Rh3AG176700 Rh3BG202600 Rh3BG314100 Rh3CG192900 Rh3CG200100 Rh3DG172600 Rh5AG508800 Rh5BG530000 Rh5BG530100 Rh5CG554400 Rh5CG554500 Rh6AG027300 Rh6BG023200 Rh6BG023400 Rh6BG169600 Rh7DG276100
rosa_wichuraiana	Rw5G046860 Rw6G002310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1023
Acc36I	ACCTGC	1 cut(s)	1151
AccII	CGCG	2 cut(s)	1035, 1158
AccIII	TCCGGA	2 cut(s)	805, 874
AciI	CCGC	4 cut(s)	7, 566, 1091, 1353
AclWI	GGATC	3 cut(s)	797, 866, 901
AcsI	RAATTY	3 cut(s)	167, 240, 570
AcuI	CTGAAG	2 cut(s)	99, 839
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	22, 1117
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	6 cut(s)	125, 223, 275, 310, 605, 1243
AleI	CACNNNNGTG	1 cut(s)	1235
AluBI	AGCT	9 cut(s)	136, 670, 714, 991, 1180, 1327, 1412, 1423, 1448
AluI	AGCT	9 cut(s)	136, 670, 714, 991, 1180, 1327, 1412, 1423, 1448
Alw21I	GWGCWC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	797, 866, 901
Aor13HI	TCCGGA	2 cut(s)	805, 874
AoxI	GGCC	2 cut(s)	87, 1108
ApeKI	GCWGC	2 cut(s)	113, 988
ApoI	RAATTY	3 cut(s)	167, 240, 570
AspLEI	GCGC	4 cut(s)	1011, 1035, 1158, 1160
AspS9I	GGNCC	3 cut(s)	88, 285, 529
AsuHPI	GGTGA	3 cut(s)	346, 493, 877
AvaII	GGWCC	2 cut(s)	285, 529
BauI	CACGAG	1 cut(s)	1306
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	125, 1000
BccI	CCATC	6 cut(s)	478, 603, 922, 953, 961, 970
BclI	TGATCA	1 cut(s)	1302
BfaI	CTAG	4 cut(s)	489, 945, 1173, 1328
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	1012
BfuAI	ACCTGC	1 cut(s)	1151
BglII	AGATCT	2 cut(s)	82, 118
BisI	GCNGC	3 cut(s)	114, 566, 989
BlsI	GCNGC	3 cut(s)	115, 567, 990
Bme18I	GGWCC	2 cut(s)	285, 529
BmgT120I	GGNCC	3 cut(s)	88, 285, 529
BmiI	GGNNCC	4 cut(s)	286, 531, 879, 1350
BmsI	GCATC	4 cut(s)	417, 686, 744, 975
BpuEI	CTTGAG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	350, 725
BsaWI	WCCGGW	4 cut(s)	15, 478, 805, 874
BsaXI	ACNNNNNCTCC	2 cut(s)	743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 1117
Bse1I	ACTGG	2 cut(s)	588, 863
Bse8I	GATNNNNATC	1 cut(s)	321
BseAI	TCCGGA	2 cut(s)	805, 874
BseDI	CCNNGG	2 cut(s)	350, 725
BseGI	GGATG	4 cut(s)	592, 701, 1051, 1064
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	22, 1117
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	588, 863
BsePI	GCGCGC	1 cut(s)	1156
BseRI	GAGGAG	1 cut(s)	1129
BseXI	GCAGC	2 cut(s)	125, 1000
BsgI	GTGCAG	1 cut(s)	1356
Bsh1236I	CGCG	2 cut(s)	1035, 1158
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	89, 1110
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	4 cut(s)	16, 479, 806, 875
BslFI	GGGAC	3 cut(s)	594, 976, 1304
BslI	CCNNNNNNNGG	2 cut(s)	22, 1117
BsmFI	GGGAC	3 cut(s)	594, 976, 1304
BsnI	GGCC	2 cut(s)	89, 1110
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp13I	TCCGGA	2 cut(s)	805, 874
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	4 cut(s)	7, 566, 1091, 1353
BspANI	GGCC	2 cut(s)	89, 1110
BspCNI	CTCAG	1 cut(s)	187
BspEI	TCCGGA	2 cut(s)	805, 874
BspFNI	CGCG	2 cut(s)	1035, 1158
BspLI	GGNNCC	4 cut(s)	286, 531, 879, 1350
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	1151
BspPI	GGATC	3 cut(s)	797, 866, 901
BspQI	GCTCTTC	1 cut(s)	660
BsrI	ACTGG	2 cut(s)	588, 863
BssECI	CCNNGG	2 cut(s)	350, 725
BssHII	GCGCGC	1 cut(s)	1156
BssSI	CACGAG	1 cut(s)	1306
BssT1I	CCWWGG	2 cut(s)	350, 725
Bst2BI	CACGAG	1 cut(s)	1306
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	2 cut(s)	660, 1095
BstC8I	GCNNGC	4 cut(s)	138, 1158, 1178, 1205
BstDEI	CTNAG	2 cut(s)	195, 382
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	4 cut(s)	592, 701, 1051, 1064
BstFNI	CGCG	2 cut(s)	1035, 1158
BstH2I	RGCGCY	1 cut(s)	1012
BstHHI	GCGC	4 cut(s)	1011, 1035, 1158, 1160
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	1454
BstNSI	RCATGY	2 cut(s)	710, 1207
BstSFI	CTRYAG	1 cut(s)	462
BstUI	CGCG	2 cut(s)	1035, 1158
BstV1I	GCAGC	2 cut(s)	125, 1000
BstX2I	RGATCY	4 cut(s)	82, 118, 871, 893
BstYI	RGATCY	4 cut(s)	82, 118, 871, 893
BsuRI	GGCC	2 cut(s)	89, 1110
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	4 cut(s)	592, 701, 1051, 1064
BtsI	GCAGTG	1 cut(s)	1464
BtsIMutI	CAGTG	4 cut(s)	75, 413, 856, 1464
BveI	ACCTGC	1 cut(s)	1151
Cac8I	GCNNGC	4 cut(s)	138, 1158, 1178, 1205
CfoI	GCGC	4 cut(s)	1011, 1035, 1158, 1160
Cfr13I	GGNCC	3 cut(s)	88, 285, 529
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	6 cut(s)	298, 351, 707, 906, 1084, 1204
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	2 cut(s)	195, 382
DrdI	GACNNNNNNGTC	1 cut(s)	1023
DseDI	GACNNNNNNGTC	1 cut(s)	1023
Eam1104I	CTCTTC	2 cut(s)	660, 1095
EarI	CTCTTC	2 cut(s)	660, 1095
Eco130I	CCWWGG	2 cut(s)	350, 725
Eco47I	GGWCC	2 cut(s)	285, 529
Eco57I	CTGAAG	2 cut(s)	99, 839
EcoT14I	CCWWGG	2 cut(s)	350, 725
ErhI	CCWWGG	2 cut(s)	350, 725
FaeI	CATG	6 cut(s)	301, 354, 710, 909, 1087, 1207
FaqI	GGGAC	3 cut(s)	594, 976, 1304
FatI	CATG	6 cut(s)	297, 350, 706, 905, 1083, 1203
FauI	CCCGC	2 cut(s)	1084, 1360
FbaI	TGATCA	1 cut(s)	1302
Fnu4HI	GCNGC	3 cut(s)	114, 566, 989
FokI	GGATG	4 cut(s)	599, 708, 1051, 1058
Fsp4HI	GCNGC	3 cut(s)	114, 566, 989
FspBI	CTAG	4 cut(s)	489, 945, 1173, 1328
GlaI	GCGC	4 cut(s)	1010, 1034, 1157, 1159
GluI	GCNGC	3 cut(s)	114, 566, 989
HaeII	RGCGCY	1 cut(s)	1012
HaeIII	GGCC	2 cut(s)	89, 1110
HapII	CCGG	4 cut(s)	16, 479, 806, 875
HhaI	GCGC	4 cut(s)	1011, 1035, 1158, 1160
Hin1II	CATG	6 cut(s)	301, 354, 710, 909, 1087, 1207
Hin6I	GCGC	4 cut(s)	1009, 1033, 1156, 1158
HinP1I	GCGC	4 cut(s)	1009, 1033, 1156, 1158
HincII	GTYRAC	2 cut(s)	192, 1128
HindII	GTYRAC	2 cut(s)	192, 1128
HindIII	AAGCTT	1 cut(s)	1446
HinfI	GANTC	5 cut(s)	12, 294, 355, 442, 934
HpaI	GTTAAC	1 cut(s)	192
HpaII	CCGG	4 cut(s)	16, 479, 806, 875
HphI	GGTGA	3 cut(s)	346, 493, 877
Hpy166II	GTNNAC	3 cut(s)	192, 1128, 1433
Hpy188I	TCNGA	4 cut(s)	289, 403, 1218, 1439
Hpy8I	GTNNAC	3 cut(s)	192, 1128, 1433
HpyAV	CCTTC	5 cut(s)	275, 759, 814, 856, 999
HpyCH4III	ACNGT	1 cut(s)	692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1454
HpyF3I	CTNAG	2 cut(s)	195, 382
Hsp92II	CATG	6 cut(s)	301, 354, 710, 909, 1087, 1207
HspAI	GCGC	4 cut(s)	1009, 1033, 1156, 1158
Kpn2I	TCCGGA	2 cut(s)	805, 874
Ksp22I	TGATCA	1 cut(s)	1302
KspAI	GTTAAC	1 cut(s)	192
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	2 cut(s)	67, 877
Lsp1109I	GCAGC	2 cut(s)	125, 1000
LweI	GCATC	4 cut(s)	417, 686, 744, 975
MaeI	CTAG	4 cut(s)	489, 945, 1173, 1328
MaeIII	GTNAC	4 cut(s)	73, 589, 970, 1060
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	4 cut(s)	82, 118, 871, 893
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	7 cut(s)	95, 167, 240, 570, 647, 653, 718
MmeI	TCCRAC	1 cut(s)	312
MroI	TCCGGA	2 cut(s)	805, 874
MseI	TTAA	6 cut(s)	35, 98, 132, 161, 191, 207
MslI	CAYNNNNRTG	2 cut(s)	906, 1235
MspA1I	CMGCKG	1 cut(s)	991
MspI	CCGG	4 cut(s)	16, 479, 806, 875
MunI	CAATTG	1 cut(s)	653
MvnI	CGCG	2 cut(s)	1035, 1158
MwoI	GCNNNNNNNGC	1 cut(s)	1454
NcoI	CCATGG	1 cut(s)	350
NlaIII	CATG	6 cut(s)	301, 354, 710, 909, 1087, 1207
NlaIV	GGNNCC	4 cut(s)	286, 531, 879, 1350
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	2 cut(s)	710, 1207
OliI	CACNNNNGTG	1 cut(s)	1235
PaeI	GCATGC	1 cut(s)	1207
PauI	GCGCGC	1 cut(s)	1156
PciI	ACATGT	1 cut(s)	706
PciSI	GCTCTTC	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 971
PfeI	GAWTC	5 cut(s)	12, 294, 355, 442, 934
PkrI	GCNGC	3 cut(s)	115, 567, 990
PscI	ACATGT	1 cut(s)	706
PspN4I	GGNNCC	4 cut(s)	286, 531, 879, 1350
PspPI	GGNCC	3 cut(s)	88, 285, 529
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	4 cut(s)	82, 118, 871, 893
PteI	GCGCGC	1 cut(s)	1156
PvuII	CAGCTG	1 cut(s)	991
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	2 cut(s)	906, 1235
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	6 cut(s)	35, 98, 132, 161, 191, 207
SatI	GCNGC	3 cut(s)	114, 566, 989
Sau96I	GGNCC	3 cut(s)	88, 285, 529
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	4 cut(s)	417, 686, 744, 975
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	285, 529
SmiMI	CAYNNNNRTG	2 cut(s)	906, 1235
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	1207
Sse9I	AATT	7 cut(s)	95, 167, 240, 570, 647, 653, 718
SsiI	CCGC	4 cut(s)	7, 566, 1091, 1353
SspMI	CTAG	4 cut(s)	489, 945, 1173, 1328
StyI	CCWWGG	2 cut(s)	350, 725
TaaI	ACNGT	1 cut(s)	692
TaqI	TCGA	4 cut(s)	147, 445, 451, 574
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	7 cut(s)	95, 167, 240, 570, 647, 653, 718
TauI	GCSGC	1 cut(s)	568
TfiI	GAWTC	5 cut(s)	12, 294, 355, 442, 934
Tru1I	TTAA	6 cut(s)	35, 98, 132, 161, 191, 207
Tru9I	TTAA	6 cut(s)	35, 98, 132, 161, 191, 207
TscAI	CASTG	4 cut(s)	82, 413, 863, 1464
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	113, 988
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	6 cut(s)	248, 286, 678, 890, 894, 1212
TspGWI	ACGGA	3 cut(s)	122, 403, 825
TspRI	CASTG	4 cut(s)	82, 413, 863, 1464
VpaK11BI	GGWCC	2 cut(s)	285, 529
XapI	RAATTY	3 cut(s)	167, 240, 570
XceI	RCATGY	2 cut(s)	710, 1207
XcmI	CCANNNNNNNNNTGG	2 cut(s)	606, 652
XspI	CTAG	4 cut(s)	489, 945, 1173, 1328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.