Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000472.1

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

26643 .. 33604

Gene Structure 6962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2745 bp

atggcgaccttagtgagctcggcaggtggtctacttgccatgctgaacgagtcccgtccagagctaaagctctacgctttgtccaacctcaacaaattggttgatgggttttggcccgagatctccaccagcgtccccatcatagaaagtttgtatgaagatgaagagtttggtcagcatcaaagacaactggctgcattgcttgtttcaaaggttttctactatttgggtgaacttaatgactcactgtcttacgcccttggagctggatccttatttgacgtgtcagaagattcttattatattcatactcttcttgctaaagctatagatgagtatgccagtcttaagtctaaggcagcagaatcaaatgctgaagcagcaaatgtggatcctaggttggaggctatcgtggagagaatgctgaataagtgtatcctggatgggaaatatcaacaagctatggggattgcaattgaatgtcgaagactggataaacttgaggaagcaatcataaagagtgataatgttcaaggaaccctgtcatattgcatcaatgtctctcattcatatattaatcttagagaatacagacgtgaggtgcttcgtcttcttgtcagagtgtatcaaaagctgccttctccagattacttgagcatttgtcagtgtctcatgtttttggatgaaccagaaggtgttgcaaccatattggagaagctcctgcgctctgaaaacaaggaagatgcacttttggcatttcaaatagcctttgacctcgttgagaatgagcaccaagcttttctcttaaatgtaagaaatcgccttccagctcccaagactaaaacctcagagccagtgcaaccagaatccagtgaagctgcacaaaatgaaggttctgctccgggggatgttcaaatgacagatggaagttctactaccagtgtgactgtgcctgaagatccaagtgaagtgatgtattccgagagactgacaaaaatcaaaggaattttgtccggagagacgtcgataaagttgaccttacaatttctgtacagccataacaagtccgatctgcttattctgaagacaataaagcagtctgttgagatgagaaatagtgtatgccatagtgcaacaatttatgctaatgcaattatgcacgctggaacaactgtggatacatttctgagggagaatctggactggttaagcagagccactaattgggcaaaattcagtgcaacagcggggctaggtgttattcacagaggccacttgcagcagggaagatctctgatggcaccttacttgcctcagggtggggctggtggtggtggaagtccgtactcggaaggtggtgctctgtatgctctgggactcattcatgccaaccatggcgagggcatcaaacagttccttcgtgatagcctacgcagtactaatgtggaggttattcaacatggggcgtgcttgggtcttggcttgtcagctttaggaactgctgatgaagagatttatgatgacattaaaagtgtgctgtatactgacagtgccgttgctggtgaagcagctggtattagtatgggtttactcatggttggaactgcaagtgagaaggctagtgaaatgcttgcatatgcacatgagacacaacacgaaaagatcatcagagggttggcattggggattgccctgacggtatatggaagagaagaggaagcagacacgctaattgaacagatgacaagagatcaagaccccatattgcgttatggtggtatgtatgcattggcattggcctatagcgggacagcaaacaacaaagctattcgtcagctgctgcattttgctgtgtcagatgtgagtgatgatgttaggagaactgctgttctagcccttggttttgtcttgtactctgagccagagcagacgcctcgtattgtctccctgctatctgagtcctacaacccacatgttcgatatggtgctgctcttgctgtaggaatttcgtgtgctggtactggcttgagtgaggccatatcattgttagagcctctgacttcagatgttgttgattttgtgcgccaaggtgccctcattgcaatggctatggtcatggtccagattagtgaagctactttgataggattgaactatgaccttaaagttccgaagtttcagttcctgtcatatgcaaaaccttctctgtttgaatatcctaaaccgaccactgtggcaaccactacatcggccgtgaaactccccactgctgttctgtcaacatcagcaaaggccaccaaagctagggccaagaaagaagctgcagatcagaaggccaatcctgaaaagacaaatcctgggggagagacatcttcaggaaagggaaaatcttctagtgagaaagattgggattcaatgcaggttgatagctcaacagagaagaaatcagaacctgaaccggcttttgagtttttgaccaacccagctagggtggttcctgctcaggaggaatacattaagtttctggaagagagcagatatgtgcctgtcaagctagcaccatcaggatttgttctcttgagagaccaaagacctactgaaccagaagtgctctcacttacggatacaccctcatctacagtgtcacctgctggtggatcagcaactggacagccaggatctgcatcggccatggcagttgatgaagaacctcaacctcctcagccttttgagtacaccgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

914

Amino Acids

99.24

Weight (kDa)

5.05

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	7 - 354	1.2e-89	26S proteasome subunit RPN2, N-terminal domain
PC_rep	PF01851	488 - 521	7.4e-06	Proteasome/cyclosome repeat
HEAT_2	PF13646	611 - 703	1.8e-11	HEAT repeats
PC_rep	PF01851	662 - 695	2.5e-06	Proteasome/cyclosome repeat
RPN2_C	PF18004	713 - 870	9.5e-44	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	14, 2656
AatII	GACGTC	1 cut(s)	1025
Acc36I	ACCTGC	3 cut(s)	14, 2410, 2656
AccB1I	GGYRCC	2 cut(s)	1300, 2090
AccB7I	CCANNNNNTGG	1 cut(s)	1224
AccI	GTMKAC	2 cut(s)	31, 1541
AccIII	TCCGGA	1 cut(s)	1013
AciI	CCGC	2 cut(s)	1247, 1806
AclWI	GGATC	7 cut(s)	264, 277, 386, 399, 953, 2665, 2686
AcoI	YGGCCR	2 cut(s)	2250, 2688
AcsI	RAATTY	3 cut(s)	1005, 1232, 2004
AcuI	CTGAAG	5 cut(s)	396, 975, 1103, 2046, 2358
AcyI	GRCGYC	2 cut(s)	1022, 1931
AdeI	CACNNNGTG	1 cut(s)	2742
AfaI	GTAC	6 cut(s)	1052, 1346, 1438, 1913, 2020, 2735
AfiI	CCNNNNNNNGG	7 cut(s)	1224, 1319, 1399, 1806, 2304, 2488, 2654
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	2 cut(s)	282, 1972
AhdI	GACNNNNNGTC	1 cut(s)	247
AjiI	CACGTC	2 cut(s)	283, 596
AjnI	CCWGG	3 cut(s)	438, 2356, 2674
Alw21I	GWGCWC	4 cut(s)	20, 792, 1363, 2613
Alw26I	GTCTC	8 cut(s)	565, 674, 979, 1013, 1640, 1948, 2360, 2577
AlwI	GGATC	7 cut(s)	264, 277, 386, 399, 953, 2665, 2686
AlwNI	CAGNNNCTG	5 cut(s)	1840, 2185, 2453, 2666, 2681
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	1013
AoxI	GGCC	9 cut(s)	113, 1270, 1797, 2034, 2250, 2292, 2307, 2334, 2688
ApoI	RAATTY	3 cut(s)	1005, 1232, 2004
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	1 cut(s)	2389
AspA2I	CCTAGG	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	726, 2085
AspS9I	GGNCC	3 cut(s)	114, 2119, 2307
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	3 cut(s)	242, 1574, 2637
AsuNHI	GCTAGC	1 cut(s)	2554
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	2119
AvrII	CCTAGG	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	1314
BaeGI	GKGCMC	1 cut(s)	2095
BamHI	GGATCC	2 cut(s)	269, 391
BanI	GGYRCC	2 cut(s)	1300, 2090
BanII	GRGCYC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	919, 951
BbsI	GAAGAC	3 cut(s)	493, 602, 1091
Bbv12I	GWGCWC	4 cut(s)	20, 792, 1363, 2613
BbvCI	CCTCAGC	1 cut(s)	2721
BccI	CCATC	6 cut(s)	98, 146, 437, 917, 1291, 2569
BceAI	ACGGC	2 cut(s)	1538, 2237
BcgI	CGANNNNNNTGC	2 cut(s)	1916, 1950
BciT130I	CCWGG	3 cut(s)	440, 2358, 2676
BciVI	GTATCC	3 cut(s)	446, 1171, 2617
BcnI	CCSGG	1 cut(s)	903
BcoDI	GTCTC	8 cut(s)	565, 674, 979, 1013, 1640, 1948, 2360, 2577
BfaI	CTAG	8 cut(s)	396, 1253, 1620, 1892, 2304, 2394, 2487, 2555
BfmI	CTRYAG	5 cut(s)	327, 1801, 1998, 2322, 2637
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	3 cut(s)	14, 2410, 2656
BfuI	GTATCC	3 cut(s)	446, 1171, 2617
BglII	AGATCT	2 cut(s)	120, 1289
BlnI	CCTAGG	1 cut(s)	395
BmcAI	AGTACT	1 cut(s)	1438
Bme1390I	CCNGG	4 cut(s)	440, 903, 2358, 2676
Bme18I	GGWCC	1 cut(s)	2119
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	116
BmgBI	CACGTC	2 cut(s)	283, 596
BmgT120I	GGNCC	3 cut(s)	114, 2119, 2307
BmiI	GGNNCC	6 cut(s)	271, 393, 538, 1302, 2092, 2496
BmrFI	CCNGG	4 cut(s)	440, 903, 2358, 2676
BmsI	GCATC	5 cut(s)	187, 561, 733, 1413, 2693
BmtI	GCTAGC	1 cut(s)	2558
BpiI	GAAGAC	3 cut(s)	493, 602, 1091
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	2 cut(s)	2502, 2721
BpuEI	CTTGAG	4 cut(s)	521, 673, 2047, 2599
BpuMI	CCSGG	1 cut(s)	903
BsaBI	GATNNNNATC	1 cut(s)	2683
BsaHI	GRCGYC	2 cut(s)	1022, 1931
BsaI	GGTCTC	1 cut(s)	2577
BsaJI	CCNNGG	8 cut(s)	259, 395, 902, 1393, 1897, 2086, 2357, 2691
BsaWI	WCCGGW	1 cut(s)	1013
Bsc4I	CCNNNNNNNGG	7 cut(s)	1224, 1319, 1399, 1806, 2304, 2488, 2654
Bse118I	RCCGGY	1 cut(s)	2458
Bse1I	ACTGG	9 cut(s)	195, 342, 495, 854, 870, 939, 1208, 2026, 2671
Bse21I	CCTNAGG	1 cut(s)	1314
Bse3DI	GCAATG	3 cut(s)	197, 2097, 2109
Bse8I	GATNNNNATC	1 cut(s)	2683
BseAI	TCCGGA	1 cut(s)	1013
BseBI	CCWGG	3 cut(s)	440, 2358, 2676
BseDI	CCNNGG	8 cut(s)	259, 395, 902, 1393, 1897, 2086, 2357, 2691
BseGI	GGATG	3 cut(s)	448, 688, 913
BseJI	GATNNNNATC	1 cut(s)	2683
BseLI	CCNNNNNNNGG	7 cut(s)	1224, 1319, 1399, 1806, 2304, 2488, 2654
BseMI	GCAATG	3 cut(s)	197, 2097, 2109
BseMII	CTCAG	7 cut(s)	861, 1178, 1328, 1908, 1947, 2516, 2735
BseNI	ACTGG	9 cut(s)	195, 342, 495, 854, 870, 939, 1208, 2026, 2671
BseRI	GAGGAG	1 cut(s)	2709
BseSI	GKGCMC	1 cut(s)	2095
BseX3I	CGGCCG	1 cut(s)	2250
BseYI	CCCAGC	1 cut(s)	2482
BsgI	GTGCAG	1 cut(s)	864
Bsh1285I	CGRYCG	1 cut(s)	2253
BshFI	GGCC	9 cut(s)	115, 1272, 1799, 2036, 2252, 2294, 2309, 2336, 2690
BshNI	GGYRCC	2 cut(s)	1300, 2090
BsiEI	CGRYCG	1 cut(s)	2253
BsiHKAI	GWGCWC	4 cut(s)	20, 792, 1363, 2613
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	902, 1014, 2459
BslFI	GGGAC	4 cut(s)	37, 119, 1389, 1822
BslI	CCNNNNNNNGG	7 cut(s)	1224, 1319, 1399, 1806, 2304, 2488, 2654
BsmAI	GTCTC	8 cut(s)	565, 674, 979, 1013, 1640, 1948, 2360, 2577
BsmBI	CGTCTC	1 cut(s)	1013
BsmFI	GGGAC	4 cut(s)	37, 119, 1389, 1822
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	9 cut(s)	115, 1272, 1799, 2036, 2252, 2294, 2309, 2336, 2690
Bso31I	GGTCTC	1 cut(s)	2577
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	5 cut(s)	20, 792, 1363, 2095, 2613
Bsp13I	TCCGGA	1 cut(s)	1013
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp19I	CCATGG	2 cut(s)	1393, 2691
BspACI	CCGC	2 cut(s)	1247, 1806
BspANI	GGCC	9 cut(s)	115, 1272, 1799, 2036, 2252, 2294, 2309, 2336, 2690
BspCNI	CTCAG	7 cut(s)	860, 1179, 1327, 1909, 1948, 2515, 2734
BspEI	TCCGGA	1 cut(s)	1013
BspLI	GGNNCC	6 cut(s)	271, 393, 538, 1302, 2092, 2496
BspMAI	CTGCAG	1 cut(s)	2326
BspMI	ACCTGC	3 cut(s)	14, 2410, 2656
BspOI	GCTAGC	1 cut(s)	2558
BspPI	GGATC	7 cut(s)	264, 277, 386, 399, 953, 2665, 2686
BspT107I	GGYRCC	2 cut(s)	1300, 2090
BspTI	CTTAAG	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	2577
BsrDI	GCAATG	3 cut(s)	197, 2097, 2109
BsrFI	RCCGGY	1 cut(s)	2458
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	9 cut(s)	195, 342, 495, 854, 870, 939, 1208, 2026, 2671
BssAI	RCCGGY	1 cut(s)	2458
BssECI	CCNNGG	8 cut(s)	259, 395, 902, 1393, 1897, 2086, 2357, 2691
BssNAI	GTATAC	1 cut(s)	1542
BssNI	GRCGYC	2 cut(s)	1022, 1931
BssT1I	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2691
Bst1107I	GTATAC	1 cut(s)	1542
Bst2UI	CCWGG	3 cut(s)	440, 2358, 2676
Bst4CI	ACNGT	9 cut(s)	249, 949, 1174, 1413, 1550, 1699, 2233, 2641, 2740
Bst6I	CTCTTC	6 cut(s)	159, 318, 1503, 1702, 1707, 2523
BstACI	GRCGYC	2 cut(s)	1022, 1931
BstAFI	CTTAAG	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	1050
BstC8I	GCNNGC	4 cut(s)	1161, 1468, 1632, 2556
BstDSI	CCRYGG	2 cut(s)	1393, 2691
BstF5I	GGATG	3 cut(s)	448, 688, 913
BstHHI	GCGC	2 cut(s)	726, 2085
BstMAI	GTCTC	8 cut(s)	565, 674, 979, 1013, 1640, 1948, 2360, 2577
BstMCI	CGRYCG	1 cut(s)	2253
BstNI	CCWGG	3 cut(s)	440, 2358, 2676
BstNSI	RCATGY	1 cut(s)	1976
BstSCI	CCNGG	4 cut(s)	438, 901, 2356, 2674
BstSFI	CTRYAG	5 cut(s)	327, 1801, 1998, 2322, 2637
BstSLI	GKGCMC	1 cut(s)	2095
BstV2I	GAAGAC	3 cut(s)	493, 602, 1091
BstX2I	RGATCY	6 cut(s)	120, 269, 391, 958, 1289, 2678
BstYI	RGATCY	6 cut(s)	120, 269, 391, 958, 1289, 2678
BstZ17I	GTATAC	1 cut(s)	1542
BstZI	CGGCCG	1 cut(s)	2250
Bsu36I	CCTNAGG	1 cut(s)	1314
BsuI	GTATCC	3 cut(s)	446, 1171, 2617
BsuRI	GGCC	9 cut(s)	115, 1272, 1799, 2036, 2252, 2294, 2309, 2336, 2690
BtgI	CCRYGG	2 cut(s)	1393, 2691
BtrI	CACGTC	2 cut(s)	283, 596
BtsCI	GGATG	3 cut(s)	448, 688, 913
BtsI	GCAGTG	1 cut(s)	2265
BveI	ACCTGC	3 cut(s)	14, 2410, 2656
Cac8I	GCNNGC	4 cut(s)	1161, 1468, 1632, 2556
CaiI	CAGNNNCTG	5 cut(s)	1840, 2185, 2453, 2666, 2681
CfoI	GCGC	2 cut(s)	726, 2085
Cfr10I	RCCGGY	1 cut(s)	2458
Cfr13I	GGNCC	3 cut(s)	114, 2119, 2307
CseI	GACGC	2 cut(s)	121, 1939
Csp6I	GTAC	6 cut(s)	1051, 1345, 1437, 1912, 2019, 2734
CviQI	GTAC	6 cut(s)	1051, 1345, 1437, 1912, 2019, 2734
DraIII	CACNNNGTG	1 cut(s)	2742
DriI	GACNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	2250, 2688
EagI	CGGCCG	1 cut(s)	2250
Eam1104I	CTCTTC	6 cut(s)	159, 318, 1503, 1702, 1707, 2523
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	6 cut(s)	159, 318, 1503, 1702, 1707, 2523
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	2250
Eco130I	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2691
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	2577
Eco47I	GGWCC	1 cut(s)	2119
Eco52I	CGGCCG	1 cut(s)	2250
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	5 cut(s)	396, 975, 1103, 2046, 2358
Eco81I	CCTNAGG	1 cut(s)	1314
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	18
EcoRII	CCWGG	3 cut(s)	438, 2356, 2674
EcoT14I	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2691
EcoT22I	ATGCAT	1 cut(s)	1789
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2691
Esp3I	CGTCTC	1 cut(s)	1013
FalI	AAGNNNNNCTT	4 cut(s)	732, 764, 1022, 1054
FaqI	GGGAC	4 cut(s)	37, 119, 1389, 1822
FauI	CCCGC	2 cut(s)	1240, 1799
FauNDI	CATATG	2 cut(s)	1636, 2191
FblI	GTMKAC	2 cut(s)	31, 1541
FokI	GGATG	3 cut(s)	455, 695, 920
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	8 cut(s)	396, 1253, 1620, 1892, 2304, 2394, 2487, 2555
GlaI	GCGC	2 cut(s)	725, 2084
GsaI	CCCAGC	1 cut(s)	2486
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	9 cut(s)	115, 1272, 1799, 2036, 2252, 2294, 2309, 2336, 2690
HapII	CCGG	3 cut(s)	902, 1014, 2459
HgaI	GACGC	2 cut(s)	121, 1939
HhaI	GCGC	2 cut(s)	726, 2085
Hin1I	GRCGYC	2 cut(s)	1022, 1931
Hin6I	GCGC	2 cut(s)	724, 2083
HinP1I	GCGC	2 cut(s)	724, 2083
HincII	GTYRAC	2 cut(s)	1035, 2280
HindII	GTYRAC	2 cut(s)	1035, 2280
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	9 cut(s)	50, 242, 293, 365, 866, 1195, 1377, 1958, 2411
HpaII	CCGG	3 cut(s)	902, 1014, 2459
HphI	GGTGA	3 cut(s)	242, 1574, 2637
Hpy166II	GTNNAC	7 cut(s)	32, 233, 1035, 1542, 1589, 2280, 2736
Hpy8I	GTNNAC	7 cut(s)	32, 233, 1035, 1542, 1589, 2280, 2736
Hpy99I	CGWCG	1 cut(s)	1027
HpyAV	CCTTC	9 cut(s)	648, 686, 833, 884, 1346, 1427, 1609, 2211, 2326
HpyCH4III	ACNGT	9 cut(s)	249, 949, 1174, 1413, 1550, 1699, 2233, 2641, 2740
HpyCH4IV	ACGT	3 cut(s)	282, 595, 1022
HpySE526I	ACGT	3 cut(s)	282, 595, 1022
Hsp92I	GRCGYC	2 cut(s)	1022, 1931
HspAI	GCGC	2 cut(s)	724, 2083
Kpn2I	TCCGGA	1 cut(s)	1013
LmnI	GCTCC	4 cut(s)	263, 723, 835, 904
LweI	GCATC	5 cut(s)	187, 561, 733, 1413, 2693
MaeI	CTAG	8 cut(s)	396, 1253, 1620, 1892, 2304, 2394, 2487, 2555
MaeII	ACGT	3 cut(s)	282, 595, 1022
MaeIII	GTNAC	2 cut(s)	943, 2643
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	6 cut(s)	120, 269, 391, 958, 1289, 2678
MhlI	GDGCHC	5 cut(s)	20, 792, 1363, 2095, 2613
MlyI	GAGTC	4 cut(s)	59, 236, 1371, 1967
MmeI	TCCRAC	3 cut(s)	108, 381, 1579
Mph1103I	ATGCAT	1 cut(s)	1789
MroI	TCCGGA	1 cut(s)	1013
MroXI	GAANNNNTTC	1 cut(s)	2389
MseI	TTAA	8 cut(s)	237, 348, 576, 806, 1208, 1527, 2163, 2517
MslI	CAYNNNNRTG	1 cut(s)	2102
MspA1I	CMGCKG	3 cut(s)	1247, 1571, 1837
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	3 cut(s)	902, 1014, 2459
MspR9I	CCNGG	4 cut(s)	440, 903, 2358, 2676
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	3 cut(s)	440, 2358, 2676
NciI	CCSGG	1 cut(s)	903
NcoI	CCATGG	2 cut(s)	1393, 2691
NdeI	CATATG	2 cut(s)	1636, 2191
NheI	GCTAGC	1 cut(s)	2554
NlaIV	GGNNCC	6 cut(s)	271, 393, 538, 1302, 2092, 2496
NmuCI	GTSAC	2 cut(s)	943, 2643
NsiI	ATGCAT	1 cut(s)	1789
NspI	RCATGY	1 cut(s)	1976
PaqCI	CACCTGC	2 cut(s)	14, 2656
PciI	ACATGT	1 cut(s)	1972
PctI	GAATGC	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	2389
PfeI	GAWTC	5 cut(s)	293, 365, 866, 1195, 2411
PflMI	CCANNNNNTGG	1 cut(s)	1224
PfoI	TCCNGGA	1 cut(s)	438
PleI	GAGTC	4 cut(s)	58, 236, 1371, 1966
PpsI	GAGTC	4 cut(s)	58, 236, 1371, 1966
PscI	ACATGT	1 cut(s)	1972
PshBI	ATTAAT	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	3 cut(s)	438, 2356, 2674
PspFI	CCCAGC	1 cut(s)	2482
PspGI	CCWGG	3 cut(s)	438, 2356, 2674
PspN4I	GGNNCC	6 cut(s)	271, 393, 538, 1302, 2092, 2496
PspPI	GGNCC	3 cut(s)	114, 2119, 2307
PstI	CTGCAG	1 cut(s)	2326
PstNI	CAGNNNCTG	5 cut(s)	1840, 2185, 2453, 2666, 2681
PsuI	RGATCY	6 cut(s)	120, 269, 391, 958, 1289, 2678
PvuII	CAGCTG	2 cut(s)	1571, 1837
RsaI	GTAC	6 cut(s)	1052, 1346, 1438, 1913, 2020, 2735
RsaNI	GTAC	6 cut(s)	1051, 1345, 1437, 1912, 2019, 2734
RseI	CAYNNNNRTG	1 cut(s)	2102
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	8 cut(s)	237, 348, 576, 806, 1208, 1527, 2163, 2517
Sau96I	GGNCC	3 cut(s)	114, 2119, 2307
ScaI	AGTACT	1 cut(s)	1438
SchI	GAGTC	4 cut(s)	59, 236, 1371, 1967
ScrFI	CCNGG	4 cut(s)	440, 903, 2358, 2676
SduI	GDGCHC	5 cut(s)	20, 792, 1363, 2095, 2613
SfaNI	GCATC	5 cut(s)	187, 561, 733, 1413, 2693
SfcI	CTRYAG	5 cut(s)	327, 1801, 1998, 2322, 2637
SinI	GGWCC	1 cut(s)	2119
SmiMI	CAYNNNNRTG	1 cut(s)	2102
SmlI	CTYRAG	5 cut(s)	347, 500, 652, 2026, 2578
SmoI	CTYRAG	5 cut(s)	347, 500, 652, 2026, 2578
SsiI	CCGC	2 cut(s)	1247, 1806
SspMI	CTAG	8 cut(s)	396, 1253, 1620, 1892, 2304, 2394, 2487, 2555
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	4 cut(s)	438, 901, 2356, 2674
StyI	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2691
TaaI	ACNGT	9 cut(s)	249, 949, 1174, 1413, 1550, 1699, 2233, 2641, 2740
TaiI	ACGT	3 cut(s)	285, 598, 1025
TaqI	TCGA	3 cut(s)	484, 1025, 1978
TatI	WGTACW	4 cut(s)	1050, 1436, 1911, 2733
TfiI	GAWTC	5 cut(s)	293, 365, 866, 1195, 2411
Tru1I	TTAA	8 cut(s)	237, 348, 576, 806, 1208, 1527, 2163, 2517
Tru9I	TTAA	8 cut(s)	237, 348, 576, 806, 1208, 1527, 2163, 2517
TseFI	GTSAC	2 cut(s)	943, 2643
Tsp45I	GTSAC	2 cut(s)	943, 2643
TspDTI	ATGAA	9 cut(s)	171, 177, 296, 558, 699, 903, 1373, 1521, 2718
TspGWI	ACGGA	2 cut(s)	1332, 2636
Van91I	CCANNNNNTGG	1 cut(s)	1224
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	2119
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	3 cut(s)	1005, 1232, 2004
XceI	RCATGY	1 cut(s)	1976
XmaJI	CCTAGG	1 cut(s)	395
XmiI	GTMKAC	2 cut(s)	31, 1541
XmnI	GAANNNNTTC	1 cut(s)	2389
XspI	CTAG	8 cut(s)	396, 1253, 1620, 1892, 2304, 2394, 2487, 2555
ZraI	GACGTC	1 cut(s)	1023
ZrmI	AGTACT	1 cut(s)	1438
Zsp2I	ATGCAT	1 cut(s)	1789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.