Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000640.1

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Reverse (-)

76266 .. 80519

Gene Structure 4254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatgttctgctactgcactcgtcatcgtctattcctgctactgtactcgtccaatcctgctactgcactcatactcgtccagttgtgctactgcacttatactcgtgttgtccagttcaactactgcacttgtactcatatcgtcgctgtcgtcttcgtgaatggtgagcgcatcgtcgtcgccggcgcgattcagattagaataagaggcgaaggtcgattccggaatcaatttgagtgctactggagatttttttgcagtgctactgcttcggagattcaagctagatctgtcgccgtcgtcttcgtgaatggtgagctcatcgtcgccgccggcgcgattcagattggagtgccggcgaagagctccgatgacgcttccagcgacgaggtcaaagaaatcgtctctctctcctcccagccttcatctgcgaccaattctccgtcgttggctgggttcgatggcctgaagattcagtgcgcggatcaaagcctcctcttcgtcggtgacggcgaccagactcacgaagttcctgttggatcactactagtcttgaaccgcgaccggaaaatctttgatgccttcgagaaagcaggagcgccgatgaccgagtccgatatagccggattttgctcgagaatttcgattgcagtctcgaacgcgagctcggcctcaatgagacagaccgccgatttgaaccttctcgggccaccaaatctcaatctaaacttcaaatgctctgagaagaagattggtttccatggattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006621 GO:0008104 GO:0008150 GO:0009889 GO:0009987 GO:0010556 GO:0010869 GO:0010941 GO:0012505 GO:0019222 GO:0031323 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048471 GO:0050789 GO:0050794 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0070972 GO:0072595 GO:2000209

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 GPCR_chapero_1

Protein Analysis

411

Amino Acids

44.9

Weight (kDa)

8.77

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANKRD13_C	PF11904	304 - 370	7.4e-12	ANKRD13 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
AccIII	TCCGGA	1 cut(s)	687
AciI	CCGC	4 cut(s)	795, 947, 1024, 1152
AclWI	GGATC	2 cut(s)	957, 1012
AcsI	RAATTY	1 cut(s)	1104
AcuI	CTGAAG	1 cut(s)	953
AfaI	GTAC	2 cut(s)	509, 598
AgsI	TTSAA	5 cut(s)	583, 746, 1021, 1162, 1198
AhlI	ACTAGT	1 cut(s)	1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	984, 1016
AluBI	AGCT	4 cut(s)	749, 784, 831, 1131
AluI	AGCT	4 cut(s)	749, 784, 831, 1131
Alw21I	GWGCWC	3 cut(s)	786, 833, 1133
Alw26I	GTCTC	3 cut(s)	874, 1123, 1138
AlwI	GGATC	2 cut(s)	957, 1012
Ama87I	CYCGRG	2 cut(s)	1099, 1169
Aor13HI	TCCGGA	1 cut(s)	687
AoxI	GGCC	3 cut(s)	928, 1134, 1172
ApoI	RAATTY	1 cut(s)	1104
ArsI	GACNNNNNNTTYG	4 cut(s)	852, 884, 1141, 1173
AspLEI	GCGC	5 cut(s)	636, 653, 803, 947, 1066
AspS9I	GGNCC	1 cut(s)	1172
AsuHPI	GGTGA	3 cut(s)	641, 791, 983
AvaI	CYCGRG	2 cut(s)	1099, 1169
BanII	GRGCYC	3 cut(s)	786, 833, 1133
BauI	CACGAG	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	610, 760
Bbv12I	GWGCWC	3 cut(s)	786, 833, 1133
BccI	CCATC	1 cut(s)	920
BceAI	ACGGC	2 cut(s)	746, 991
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BcoDI	GTCTC	3 cut(s)	874, 1123, 1138
BcuI	ACTAGT	1 cut(s)	1012
BfaI	CTAG	2 cut(s)	750, 1013
BfoI	RGCGCY	1 cut(s)	1067
BglII	AGATCT	1 cut(s)	752
BisI	GCNGC	1 cut(s)	795
BlsI	GCNGC	1 cut(s)	796
BmeT110I	CYCGRG	2 cut(s)	1099, 1169
BmgT120I	GGNCC	1 cut(s)	1172
BmsI	GCATC	2 cut(s)	645, 1033
BpiI	GAAGAC	2 cut(s)	610, 760
BpmI	CTGGAG	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	1225
BsaWI	WCCGGW	2 cut(s)	687, 1029
BsaXI	ACNNNNNCTCC	2 cut(s)	889, 919
Bse118I	RCCGGY	3 cut(s)	647, 797, 820
Bse1I	ACTGG	3 cut(s)	544, 577, 713
BseAI	TCCGGA	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	1225
BseMII	CTCAG	1 cut(s)	1197
BseNI	ACTGG	3 cut(s)	544, 577, 713
BseRI	GAGGAG	2 cut(s)	868, 950
BseYI	CCCAGC	2 cut(s)	882, 917
Bsh1236I	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
Bsh1285I	CGRYCG	1 cut(s)	1030
BshFI	GGCC	3 cut(s)	930, 1136, 1174
BsiEI	CGRYCG	1 cut(s)	1030
BsiHKAI	GWGCWC	3 cut(s)	786, 833, 1133
BsiHKCI	CYCGRG	2 cut(s)	1099, 1169
BsiSI	CCGG	6 cut(s)	648, 688, 798, 821, 1030, 1089
BsmAI	GTCTC	3 cut(s)	874, 1123, 1138
BsmBI	CGTCTC	1 cut(s)	874
BsnI	GGCC	3 cut(s)	930, 1136, 1174
BsoBI	CYCGRG	2 cut(s)	1099, 1169
Bsp1286I	GDGCHC	3 cut(s)	786, 833, 1133
Bsp13I	TCCGGA	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	752, 949, 1004
Bsp19I	CCATGG	1 cut(s)	1225
BspACI	CCGC	4 cut(s)	795, 947, 1024, 1152
BspANI	GGCC	3 cut(s)	930, 1136, 1174
BspCNI	CTCAG	1 cut(s)	1198
BspEI	TCCGGA	1 cut(s)	687
BspFNI	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
BspPI	GGATC	2 cut(s)	957, 1012
BspQI	GCTCTTC	1 cut(s)	821
BsrFI	RCCGGY	3 cut(s)	647, 797, 820
BsrI	ACTGG	3 cut(s)	544, 577, 713
BssAI	RCCGGY	3 cut(s)	647, 797, 820
BssECI	CCNNGG	1 cut(s)	1225
BssMI	GATC	3 cut(s)	752, 949, 1004
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	1225
Bst2BI	CACGAG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	2 cut(s)	821, 968
BstC8I	GCNNGC	4 cut(s)	649, 799, 822, 1129
BstDEI	CTNAG	1 cut(s)	1206
BstDSI	CCRYGG	1 cut(s)	1225
BstFNI	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
BstH2I	RGCGCY	1 cut(s)	1067
BstHHI	GCGC	5 cut(s)	636, 653, 803, 947, 1066
BstKTI	GATC	3 cut(s)	755, 952, 1007
BstMAI	GTCTC	3 cut(s)	874, 1123, 1138
BstMBI	GATC	3 cut(s)	752, 949, 1004
BstMCI	CGRYCG	1 cut(s)	1030
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 1133
BstUI	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
BstV2I	GAAGAC	2 cut(s)	610, 760
BstX2I	RGATCY	1 cut(s)	752
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	3 cut(s)	930, 1136, 1174
BtgI	CCRYGG	1 cut(s)	1225
BtsI	GCAGTG	1 cut(s)	730
BtsIMutI	CAGTG	2 cut(s)	730, 947
Cac8I	GCNNGC	4 cut(s)	649, 799, 822, 1129
CfoI	GCGC	5 cut(s)	636, 653, 803, 947, 1066
Cfr10I	RCCGGY	3 cut(s)	647, 797, 820
Cfr13I	GGNCC	1 cut(s)	1172
CseI	GACGC	1 cut(s)	848
Csp6I	GTAC	2 cut(s)	508, 597
CviAII	CATG	2 cut(s)	466, 1226
CviQI	GTAC	2 cut(s)	508, 597
DdeI	CTNAG	1 cut(s)	1206
DpnI	GATC	3 cut(s)	754, 951, 1006
DpnII	GATC	3 cut(s)	752, 949, 1004
Eam1104I	CTCTTC	2 cut(s)	821, 968
EarI	CTCTTC	2 cut(s)	821, 968
Ecl136II	GAGCTC	3 cut(s)	784, 831, 1131
Eco130I	CCWWGG	1 cut(s)	1225
Eco24I	GRGCYC	3 cut(s)	786, 833, 1133
Eco53kI	GAGCTC	3 cut(s)	784, 831, 1131
Eco57I	CTGAAG	1 cut(s)	953
Eco88I	CYCGRG	2 cut(s)	1099, 1169
EcoICRI	GAGCTC	3 cut(s)	784, 831, 1131
EcoT14I	CCWWGG	1 cut(s)	1225
EcoT38I	GRGCYC	3 cut(s)	786, 833, 1133
ErhI	CCWWGG	1 cut(s)	1225
Esp3I	CGTCTC	1 cut(s)	874
FaeI	CATG	2 cut(s)	469, 1229
FaiI	YATR	6 cut(s)	467, 536, 564, 603, 1085, 1227
FatI	CATG	2 cut(s)	465, 1225
Fnu4HI	GCNGC	1 cut(s)	795
FriOI	GRGCYC	3 cut(s)	786, 833, 1133
Fsp4HI	GCNGC	1 cut(s)	795
FspBI	CTAG	2 cut(s)	750, 1013
GlaI	GCGC	5 cut(s)	635, 652, 802, 946, 1065
GluI	GCNGC	1 cut(s)	795
GsaI	CCCAGC	2 cut(s)	886, 921
GsuI	CTGGAG	1 cut(s)	730
HaeII	RGCGCY	1 cut(s)	1067
HaeIII	GGCC	3 cut(s)	930, 1136, 1174
HapII	CCGG	6 cut(s)	648, 688, 798, 821, 1030, 1089
HgaI	GACGC	1 cut(s)	848
HhaI	GCGC	5 cut(s)	636, 653, 803, 947, 1066
Hin1II	CATG	2 cut(s)	469, 1229
Hin6I	GCGC	5 cut(s)	634, 651, 801, 945, 1064
HinP1I	GCGC	5 cut(s)	634, 651, 801, 945, 1064
HinfI	GANTC	9 cut(s)	655, 684, 691, 742, 805, 937, 985, 1076, 1230
HpaII	CCGG	6 cut(s)	648, 688, 798, 821, 1030, 1089
HphI	GGTGA	3 cut(s)	641, 791, 983
Hpy188I	TCNGA	7 cut(s)	660, 739, 810, 835, 1081, 1207, 1235
Hpy188III	TCNNGA	8 cut(s)	622, 688, 772, 989, 1018, 1051, 1101, 1120
Hpy99I	CGWCG	8 cut(s)	611, 644, 647, 767, 794, 854, 913, 971
HpyAV	CCTTC	4 cut(s)	671, 897, 1057, 1175
HpyCH4III	ACNGT	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 1133
HpyF3I	CTNAG	1 cut(s)	1206
Hsp92II	CATG	2 cut(s)	469, 1229
HspAI	GCGC	5 cut(s)	634, 651, 801, 945, 1064
Kpn2I	TCCGGA	1 cut(s)	687
KroI	GCCGGC	3 cut(s)	647, 797, 820
KroNI	GCCGGC	3 cut(s)	649, 799, 822
Kzo9I	GATC	3 cut(s)	752, 949, 1004
LguI	GCTCTTC	1 cut(s)	821
LmnI	GCTCC	2 cut(s)	836, 1061
LweI	GCATC	2 cut(s)	645, 1033
MaeI	CTAG	2 cut(s)	750, 1013
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	3 cut(s)	754, 951, 1006
MboI	GATC	3 cut(s)	752, 949, 1004
MboII	GAAGA	7 cut(s)	610, 760, 838, 946, 955, 1222, 1225
MflI	RGATCY	1 cut(s)	752
MhlI	GDGCHC	3 cut(s)	786, 833, 1133
MluCI	AATT	3 cut(s)	695, 901, 1104
MlyI	GAGTC	2 cut(s)	979, 1085
MmeI	TCCRAC	1 cut(s)	982
MnlI	CCTC	6 cut(s)	665, 847, 889, 968, 971, 1147
MreI	CGCCGGCG	2 cut(s)	647, 797
MroI	TCCGGA	1 cut(s)	687
MroNI	GCCGGC	3 cut(s)	647, 797, 820
MspI	CCGG	6 cut(s)	648, 688, 798, 821, 1030, 1089
MvnI	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
MwoI	GCNNNNNNNGC	2 cut(s)	800, 1133
NaeI	GCCGGC	3 cut(s)	649, 799, 822
NcoI	CCATGG	1 cut(s)	1225
NdeII	GATC	3 cut(s)	752, 949, 1004
NgoMIV	GCCGGC	3 cut(s)	647, 797, 820
NlaIII	CATG	2 cut(s)	469, 1229
NmeAIII	GCCGAG	1 cut(s)	1112
NmuCI	GTSAC	1 cut(s)	971
PaeR7I	CTCGAG	1 cut(s)	1099
PciSI	GCTCTTC	1 cut(s)	821
PcsI	WCGNNNNNNNCGW	4 cut(s)	612, 846, 975, 1106
PdiI	GCCGGC	3 cut(s)	649, 799, 822
PfeI	GAWTC	7 cut(s)	655, 684, 691, 742, 805, 937, 1230
PflFI	GACNNNGTC	2 cut(s)	854, 1075
PkrI	GCNGC	1 cut(s)	796
PleI	GAGTC	2 cut(s)	979, 1084
PpsI	GAGTC	2 cut(s)	979, 1084
Psp124BI	GAGCTC	3 cut(s)	786, 833, 1133
PspFI	CCCAGC	2 cut(s)	882, 917
PspPI	GGNCC	1 cut(s)	1172
PsuI	RGATCY	1 cut(s)	752
PsyI	GACNNNGTC	2 cut(s)	854, 1075
RsaI	GTAC	2 cut(s)	509, 598
RsaNI	GTAC	2 cut(s)	508, 597
SacI	GAGCTC	3 cut(s)	786, 833, 1133
SapI	GCTCTTC	1 cut(s)	821
SatI	GCNGC	1 cut(s)	795
Sau3AI	GATC	3 cut(s)	752, 949, 1004
Sau96I	GGNCC	1 cut(s)	1172
SchI	GAGTC	2 cut(s)	979, 1085
SduI	GDGCHC	3 cut(s)	786, 833, 1133
SetI	ASST	7 cut(s)	682, 751, 786, 833, 858, 1133, 1167
SfaNI	GCATC	2 cut(s)	645, 1033
Sfr274I	CTCGAG	1 cut(s)	1099
SgrAI	CRCCGGYG	2 cut(s)	647, 797
SlaI	CTCGAG	1 cut(s)	1099
SmlI	CTYRAG	1 cut(s)	1099
SmoI	CTYRAG	1 cut(s)	1099
SpeI	ACTAGT	1 cut(s)	1012
Sse9I	AATT	3 cut(s)	695, 901, 1104
SsiI	CCGC	4 cut(s)	795, 947, 1024, 1152
SspMI	CTAG	2 cut(s)	750, 1013
SstI	GAGCTC	3 cut(s)	786, 833, 1133
StyI	CCWWGG	1 cut(s)	1225
TaaI	ACNGT	1 cut(s)	507
TaqI	TCGA	6 cut(s)	682, 924, 1050, 1100, 1109, 1121
TaqII	GACCGA	1 cut(s)	1088
TasI	AATT	3 cut(s)	695, 901, 1104
TatI	WGTACW	2 cut(s)	507, 596
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	7 cut(s)	655, 684, 691, 742, 805, 937, 1230
TscAI	CASTG	2 cut(s)	730, 947
TseFI	GTSAC	1 cut(s)	971
Tsp45I	GTSAC	1 cut(s)	971
TspDTI	ATGAA	1 cut(s)	879
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	2 cut(s)	730, 947
Tth111I	GACNNNGTC	2 cut(s)	854, 1075
XapI	RAATTY	1 cut(s)	1104
XhoI	CTCGAG	1 cut(s)	1099
XspI	CTAG	2 cut(s)	750, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.