Rmu_sc0000871.1_g000016

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000871.1
OG0004846
Physical Location & Seq
Forward (+)
68389 .. 70916
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
atgggaaagttttacttcaccaacgaacaatcttttgccttatcagccactaacaaggaacaccaagagctcgtatcttctaaaagcctcaccaactcctcctccgacttctacaagctctttttcgataatgacaacacccttcggcttctctacgatggccccgaagttttgagtatttactggcctgacccttggcttctaattgttaccaagctgagaggtcctcgtacatgcaacaacggtagaatcgcaatgttaggcttccaccacaaatatgactgggctaatcaattttacaattgttatcccaagtccgaattgagaaatggattccgttcgcctaattttgatggtgactcgtacctcaagctacccaaatccacacttttgtcatatgatgtccatggtgataatgaatccactaataacaacatgtgtacagacaaggccacacgaggtttcaaagaagaaattggtagaggaggaggaggaattgtgtacaagggcacattgtccgatcaacgagttgcggcaatcaagcaattgaatgttgctaaccaaggagaagcagacttccttgcagaagtgagccttatcagtaagctataccacatgaacttgatagatatgtggggctattgcatagaagacaagcacaggcttgaatacatggagcatggttccttggcaaaaaatttgtcttccaatgtcaatgtgctagattggaacaaaaggtttgaaattgctgttggtacagcaaaagggctagcttacttgcatgaacaatgcttggaatgggtcttgcactgcgatataaagcctcacaaggttctcttggactctgaggctccgactagaggaactagaggttacatggctccagagtgggttcataacatgcccatcacttcaaaagtggatgtttatagctatgggattgttgtcttggaaatgctcaccggcaagatgataacagaaagtgttcaattttcattagaaagaggaggggagacacagaaaaagttgcttgtttcatgggttaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

349

Amino Acids

39.8

Weight (kDa)

6.6

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 155 - 283 3.5e-18 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 156 - 283 2.6e-20 Protein kinase domain
Pkinase PF00069 287 - 327 2.5e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 291 - 324 7.7e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 533
AcsI RAATTY 1 cut(s) 697
AfaI GTAC 5 cut(s) 232, 365, 442, 503, 757
AfiI CCNNNNNNNGG 1 cut(s) 860
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 6 cut(s) 466, 550, 668, 743, 915, 989
AjuI GAANNNNNNNTTGG 2 cut(s) 735, 767
AluBI AGCT 7 cut(s) 70, 118, 217, 373, 607, 773, 933
AluI AGCT 7 cut(s) 70, 118, 217, 373, 607, 773, 933
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 1007
AoxI GGCC 3 cut(s) 160, 185, 450
ApoI RAATTY 1 cut(s) 697
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
Asp700I GAANNNNTTC 1 cut(s) 984
AspS9I GGNCC 2 cut(s) 161, 224
AsuHPI GGTGA 5 cut(s) 10, 82, 368, 422, 952
AsuNHI GCTAGC 1 cut(s) 769
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 657, 696
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 3 cut(s) 152, 347, 914
BcoDI GTCTC 1 cut(s) 1007
BfaI CTAG 4 cut(s) 722, 770, 858, 867
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 161, 224
BmiI GGNNCC 4 cut(s) 163, 685, 852, 882
BmrI ACTGGG 1 cut(s) 292
BmtI GCTAGC 1 cut(s) 773
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 2 cut(s) 657, 696
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 194, 406, 562, 687
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 483, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 860
Bse118I RCCGGY 1 cut(s) 962
Bse1I ACTGG 2 cut(s) 188, 287
Bse3DI GCAATG 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 194, 406, 562, 687
BseGI GGATG 1 cut(s) 928
BseLI CCNNNNNNNGG 1 cut(s) 860
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 209, 837
BseNI ACTGG 2 cut(s) 188, 287
BseRI GAGGAG 6 cut(s) 88, 91, 498, 501, 504, 1020
BseSI GKGCMC 1 cut(s) 512
BshFI GGCC 3 cut(s) 162, 187, 452
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 963
BslI CCNNNNNNNGG 1 cut(s) 860
BsmAI GTCTC 1 cut(s) 1007
BsnI GGCC 3 cut(s) 162, 187, 452
Bsp1286I GDGCHC 2 cut(s) 72, 512
Bsp1407I TGTACA 2 cut(s) 440, 501
Bsp143I GATC 1 cut(s) 520
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 1 cut(s) 533
BspANI GGCC 3 cut(s) 162, 187, 452
BspCNI CTCAG 2 cut(s) 210, 838
BspLI GGNNCC 4 cut(s) 163, 685, 852, 882
BspOI GCTAGC 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 962
BsrGI TGTACA 2 cut(s) 440, 501
BsrI ACTGG 2 cut(s) 188, 287
BssAI RCCGGY 1 cut(s) 962
BssECI CCNNGG 4 cut(s) 194, 406, 562, 687
BssMI GATC 1 cut(s) 520
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 4 cut(s) 194, 406, 562, 687
Bst2BI CACGAG 1 cut(s) 456
Bst4CI ACNGT 1 cut(s) 245
BstAUI TGTACA 2 cut(s) 440, 501
BstC8I GCNNGC 1 cut(s) 771
BstDEI CTNAG 2 cut(s) 218, 846
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 1 cut(s) 928
BstKTI GATC 1 cut(s) 523
BstMAI GTCTC 1 cut(s) 1007
BstMBI GATC 1 cut(s) 520
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 3 cut(s) 237, 439, 904
BstSLI GKGCMC 1 cut(s) 512
BstV2I GAAGAC 2 cut(s) 657, 696
BsuRI GGCC 3 cut(s) 162, 187, 452
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 1 cut(s) 928
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 771
Cfr10I RCCGGY 1 cut(s) 962
Cfr13I GGNCC 2 cut(s) 161, 224
Csp6I GTAC 5 cut(s) 231, 364, 441, 502, 756
CviQI GTAC 5 cut(s) 231, 364, 441, 502, 756
DdeI CTNAG 2 cut(s) 218, 846
DpnI GATC 1 cut(s) 522
DpnII GATC 1 cut(s) 520
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 4 cut(s) 194, 406, 562, 687
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 224
EcoT14I CCWWGG 4 cut(s) 194, 406, 562, 687
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 4 cut(s) 194, 406, 562, 687
FalI AAGNNNNNCTT 5 cut(s) 31, 579, 611, 821, 853
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 1 cut(s) 935
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 4 cut(s) 722, 770, 858, 867
GluI GCNGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 867
HaeIII GGCC 3 cut(s) 162, 187, 452
HapII CCGG 1 cut(s) 963
HinfI GANTC 5 cut(s) 249, 333, 359, 419, 842
HpaII CCGG 1 cut(s) 963
HphI GGTGA 5 cut(s) 10, 82, 368, 422, 952
Hpy166II GTNNAC 2 cut(s) 441, 502
Hpy188I TCNGA 5 cut(s) 106, 319, 520, 847, 855
Hpy188III TCNNGA 1 cut(s) 884
Hpy8I GTNNAC 2 cut(s) 441, 502
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 5 cut(s) 237, 584, 645, 781, 808
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 218, 846
Kzo9I GATC 1 cut(s) 520
LmnI GCTCC 3 cut(s) 676, 856, 886
LpnPI CCDG 6 cut(s) 169, 201, 268, 646, 897, 976
MaeI CTAG 4 cut(s) 722, 770, 858, 867
MaeIII GTNAC 3 cut(s) 208, 356, 872
MalI GATC 1 cut(s) 522
MboI GATC 1 cut(s) 520
MboII GAAGA 4 cut(s) 69, 482, 662, 696
MfeI CAATTG 2 cut(s) 301, 545
MhlI GDGCHC 2 cut(s) 72, 512
MlyI GAGTC 2 cut(s) 353, 836
MmeI TCCRAC 2 cut(s) 129, 878
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 1 cut(s) 1044
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 1 cut(s) 963
MunI CAATTG 2 cut(s) 301, 545
MwoI GCNNNNNNNGC 1 cut(s) 44
NcoI CCATGG 1 cut(s) 406
NdeI CATATG 1 cut(s) 397
NdeII GATC 1 cut(s) 520
NheI GCTAGC 1 cut(s) 769
NlaIV GGNNCC 4 cut(s) 163, 685, 852, 882
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 3 cut(s) 237, 439, 904
PciI ACATGT 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 3 cut(s) 249, 333, 419
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 2 cut(s) 353, 836
PpsI GAGTC 2 cut(s) 353, 836
PpuMI RGGWCCY 1 cut(s) 224
PscI ACATGT 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 4 cut(s) 163, 685, 852, 882
PspPI GGNCC 2 cut(s) 161, 224
PspPPI RGGWCCY 1 cut(s) 224
RsaI GTAC 5 cut(s) 232, 365, 442, 503, 757
RsaNI GTAC 5 cut(s) 231, 364, 441, 502, 756
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 1044
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 1 cut(s) 520
Sau96I GGNCC 2 cut(s) 161, 224
SchI GAGTC 2 cut(s) 353, 836
SduI GDGCHC 2 cut(s) 72, 512
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SsiI CCGC 1 cut(s) 533
SspMI CTAG 4 cut(s) 722, 770, 858, 867
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 4 cut(s) 194, 406, 562, 687
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 126
TatI WGTACW 2 cut(s) 440, 501
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 3 cut(s) 249, 333, 419
Tru1I TTAA 1 cut(s) 1044
Tru9I TTAA 1 cut(s) 1044
TscAI CASTG 1 cut(s) 815
TseFI GTSAC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 6 cut(s) 432, 632, 798, 884, 984, 1026
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 815
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 697
XceI RCATGY 3 cut(s) 237, 439, 904
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 4 cut(s) 722, 770, 858, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.