Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000924.1

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Reverse (-)

113227 .. 113979

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgtcgtctcaagcgcctctaacggctccggcgaatacttcgtcgacctcagccttggcactcctcgtcgccgacaccagcaacgatttggtctggctctgcttctccacctcccatggcgatgatgtttgcccccaaagacttcgtcctctctctccagtgccccagatccgtcatcattctcatcaagaccagaccatcgccgccctgtcagcctacatagagcccggcggcgccatcattgacggcggcaacgagtggtacgagaacaccgagtgccacatccacgacgcctccgccaagggcctcctccacctcgacatgggagtctccaacaggcatgttgatgacttggcggcgccaaccattgctgcgtcattggattgtagatacttgagtggattgaaggaggagagggagagcgccgaggaggagactatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

147

Amino Acids

15.82

Weight (kDa)

4.73

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	59 - 112	2.6e-06	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	233, 358
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	5 cut(s)	204, 231, 249, 297, 356
AclWI	GGATC	1 cut(s)	163
AcyI	GRCGYC	3 cut(s)	234, 291, 359
AdeI	CACNNNGTG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	406
Alw26I	GTCTC	3 cut(s)	12, 334, 428
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	371
ArsI	GACNNNNNNTTYG	4 cut(s)	26, 58, 130, 162
AspLEI	GCGC	4 cut(s)	16, 236, 361, 425
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	165
BaeI	ACNNNNGTAYC	2 cut(s)	382, 415
BanI	GGYRCC	2 cut(s)	233, 358
BanII	GRGCYC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	2 cut(s)	206, 245
BceAI	ACGGC	2 cut(s)	39, 262
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	12, 334, 428
BfaI	CTAG	1 cut(s)	442
BfoI	RGCGCY	4 cut(s)	17, 237, 362, 426
BisI	GCNGC	5 cut(s)	204, 232, 250, 357, 372
BlsI	GCNGC	5 cut(s)	205, 233, 251, 358, 373
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	27, 235, 360
BmrFI	CCNGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	3 cut(s)	234, 291, 359
BsaJI	CCNNGG	4 cut(s)	54, 115, 300, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	366
BseDI	CCNNGG	4 cut(s)	54, 115, 300, 426
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	4 cut(s)	53, 299, 425, 443
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	358
BshFI	GGCC	1 cut(s)	306
BshNI	GGYRCC	2 cut(s)	233, 358
BsiSI	CCGG	2 cut(s)	29, 228
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	3 cut(s)	12, 334, 428
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	165, 228
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	5 cut(s)	204, 231, 249, 297, 356
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	27, 235, 360
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	2 cut(s)	233, 358
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	4 cut(s)	54, 115, 300, 426
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	3 cut(s)	234, 291, 359
BssT1I	CCWWGG	3 cut(s)	54, 115, 300
BstACI	GRCGYC	3 cut(s)	234, 291, 359
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	282
BstH2I	RGCGCY	4 cut(s)	17, 237, 362, 426
BstHHI	GCGC	4 cut(s)	16, 236, 361, 425
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	3 cut(s)	12, 334, 428
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	2 cut(s)	135, 184
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	165
CfoI	GCGC	4 cut(s)	16, 236, 361, 425
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	2 cut(s)	299, 363
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	3 cut(s)	116, 322, 341
CviJI	RGCY	6 cut(s)	26, 53, 97, 215, 226, 306
CviKI_1	RGCY	6 cut(s)	26, 53, 97, 215, 226, 306
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	49
DinI	GGCGCC	2 cut(s)	235, 360
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DraIII	CACNNNGTG	1 cut(s)	276
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	3 cut(s)	54, 115, 300
Eco24I	GRGCYC	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT14I	CCWWGG	3 cut(s)	54, 115, 300
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	2 cut(s)	235, 360
EheI	GGCGCC	2 cut(s)	235, 360
ErhI	CCWWGG	3 cut(s)	54, 115, 300
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	119, 325, 344
FaiI	YATR	4 cut(s)	117, 221, 323, 342
FatI	CATG	3 cut(s)	115, 321, 340
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	5 cut(s)	204, 232, 250, 357, 372
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	5 cut(s)	204, 232, 250, 357, 372
FspBI	CTAG	1 cut(s)	442
GlaI	GCGC	4 cut(s)	15, 235, 360, 424
GluI	GCNGC	5 cut(s)	204, 232, 250, 357, 372
GsuI	CTGGAG	1 cut(s)	141
HaeII	RGCGCY	4 cut(s)	17, 237, 362, 426
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	2 cut(s)	29, 228
HgaI	GACGC	2 cut(s)	299, 363
HhaI	GCGC	4 cut(s)	16, 236, 361, 425
Hin1I	GRCGYC	3 cut(s)	234, 291, 359
Hin1II	CATG	3 cut(s)	119, 325, 344
Hin6I	GCGC	4 cut(s)	14, 234, 359, 423
HinP1I	GCGC	4 cut(s)	14, 234, 359, 423
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	29, 228
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	3 cut(s)	46, 71, 293
HpyAV	CCTTC	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	49
Hsp92I	GRCGYC	3 cut(s)	234, 291, 359
Hsp92II	CATG	3 cut(s)	119, 325, 344
HspAI	GCGC	4 cut(s)	14, 234, 359, 423
KasI	GGCGCC	2 cut(s)	233, 358
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	9 cut(s)	42, 79, 91, 171, 179, 206, 221, 241, 322
Lsp1109I	GCAGC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	442
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	165, 228
Mly113I	GGCGCC	2 cut(s)	234, 359
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	357
MslI	CAYNNNNRTG	2 cut(s)	120, 345
MspI	CCGG	2 cut(s)	29, 228
MspR9I	CCNGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	212
NarI	GGCGCC	2 cut(s)	234, 359
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	3 cut(s)	119, 325, 344
NlaIV	GGNNCC	3 cut(s)	27, 235, 360
NspI	RCATGY	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	4 cut(s)	29, 252, 261, 270
PflFI	GACNNNGTC	1 cut(s)	144
PkrI	GCNGC	5 cut(s)	205, 233, 251, 358, 373
PleI	GAGTC	1 cut(s)	335
PluTI	GGCGCC	2 cut(s)	237, 362
PpsI	GAGTC	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	27, 235, 360
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	2 cut(s)	120, 345
SalI	GTCGAC	1 cut(s)	43
SatI	GCNGC	5 cut(s)	204, 232, 250, 357, 372
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	165, 228
SetI	ASST	3 cut(s)	50, 113, 318
SfoI	GGCGCC	2 cut(s)	235, 360
SmiMI	CAYNNNNRTG	2 cut(s)	120, 345
SmlI	CTYRAG	2 cut(s)	9, 394
SmoI	CTYRAG	2 cut(s)	9, 394
SsiI	CCGC	5 cut(s)	204, 231, 249, 297, 356
SspDI	GGCGCC	2 cut(s)	233, 358
SspMI	CTAG	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	3 cut(s)	54, 115, 300
TaqI	TCGA	2 cut(s)	44, 318
TauI	GCSGC	4 cut(s)	206, 234, 252, 359
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	165
Tth111I	GACNNNGTC	1 cut(s)	144
XceI	RCATGY	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	44
XspI	CTAG	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.