Rmu_sc0000945.1_g000007

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000945.1
OG0006952
Physical Location & Seq
Forward (+)
26946 .. 28295
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1350 bp
atgaataacactattgatgatctccctgatgttgtattggttgacattctctgtcgacttccgtgctttgattttgtgttcaaatgcaagtctgtgtgcaaacgttggagcattctcatgtcggacccatacttcattggccgctttctacttcgactccaaagccgacatacgccaattccaccacttactctgatcaatcaaaagggggagaacttccctatggcattcaatcctctttcaccactcaagtttctaactaggatgttcttgagactcatgagttccctctctttgaaaaaagagccagttgtagtaggggcgtgtaatgacttggttttgtgtttcgcaagtgagtattttcaacgtgattacttcatctgtaatccatataccacccaatgggttgctcttcctcctgtctctcgagttctccgtgacgtaccagttggattcatatgtgatccctactataattatcataagaaagaagaggaagtgcatcaaacaaaaagtactatcatacaagataagttgattaatattaacgtggactataggtgcatggtagtgagaattcttccttatgatgacacatttgaagatgaactttcctacaaattcaaagtggagatcttctctttcgagattggtgaatggagagagtcaattatctcattcccacaaagatttaaacttgatgatatcgattccaatgttcactttgcttacaatgaaatgctgtattattggtcgagtatgtggggagattataactttctgattgggttgaacccgttcatgatcagcgacgtcactaataacaacatcatcaggaccagtagtactagcaatagtaactccggtgataatcctcaatattaccctaaatgtcgttacattgaactcatagttaaagacgctaattatgatgagttatcttacctccataactgtcaaatacatgacgtagttgtgcacggaaccggagggtatctgcaaatatgtcttttagacgttgaacattctgcattcatttgggagttaacaaaagaagaagatgatctgataattgcggccgatggagcaggaaaattgtattcgaagcatcttttactgcctttggccaaagaaatggagctgattggtttagacccatataatgaaggctgcttatacgtaagactcaacggatccctttttgatcttataaaccttcgtagaagcttgttatacgagatgaacatgcctaaaaggagtcgaaatattagtaactattgcttcttcccattaaaagcgaaaccatggtggccaacaccagttcccagactacctcacccatcagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

449

Amino Acids

52.42

Weight (kDa)

5.74

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 45 7.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 774, 1211
AatII GACGTC 1 cut(s) 816
AccB7I CCANNNNNTGG 1 cut(s) 402
AccI GTMKAC 1 cut(s) 55
AciI CCGC 2 cut(s) 142, 1076
AclI AACGTT 1 cut(s) 103
AclWI GGATC 3 cut(s) 458, 1188, 1201
AcoI YGGCCR 4 cut(s) 139, 1077, 1125, 1310
AcsI RAATTY 2 cut(s) 576, 620
AcyI GRCGYC 1 cut(s) 813
AfaI GTAC 3 cut(s) 444, 517, 847
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 9 cut(s) 82, 232, 298, 365, 602, 625, 793, 905, 1022
AluBI AGCT 3 cut(s) 1141, 1227, 1346
AluI AGCT 3 cut(s) 1141, 1227, 1346
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 2 cut(s) 268, 427
Alw44I GTGCAC 1 cut(s) 977
AlwI GGATC 3 cut(s) 458, 1188, 1201
Ama87I CYCGRG 1 cut(s) 426
AoxI GGCC 4 cut(s) 139, 1077, 1125, 1310
ApaLI GTGCAC 1 cut(s) 977
ApeKI GCWGC 1 cut(s) 1170
ApoI RAATTY 2 cut(s) 576, 620
AseI ATTAAT 1 cut(s) 540
Asp700I GAANNNNTTC 1 cut(s) 797
AspS9I GGNCC 2 cut(s) 124, 837
AsuHPI GGTGA 4 cut(s) 234, 665, 878, 1328
AsuII TTCGAA 1 cut(s) 1103
AvaI CYCGRG 1 cut(s) 426
AvaII GGWCC 2 cut(s) 124, 837
BaeGI GKGCMC 1 cut(s) 981
BalI TGGCCA 2 cut(s) 1127, 1312
BamHI GGATCC 1 cut(s) 1193
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 1 cut(s) 1157
BccI CCATC 2 cut(s) 1076, 1348
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BclI TGATCA 2 cut(s) 195, 804
BcoDI GTCTC 2 cut(s) 268, 427
BfaI CTAG 2 cut(s) 261, 849
BfmI CTRYAG 1 cut(s) 556
BglII AGATCT 1 cut(s) 633
BisI GCNGC 3 cut(s) 142, 1077, 1171
BlsI GCNGC 3 cut(s) 143, 1078, 1172
BmcAI AGTACT 2 cut(s) 517, 847
Bme18I GGWCC 2 cut(s) 124, 837
BmeT110I CYCGRG 1 cut(s) 426
BmgT120I GGNCC 2 cut(s) 124, 837
BmiI GGNNCC 3 cut(s) 126, 985, 1195
BmsI GCATC 2 cut(s) 511, 1117
BplI GAGNNNNNCTC 2 cut(s) 623, 655
Bpu14I TTCGAA 1 cut(s) 1103
BpuEI CTTGAG 2 cut(s) 233, 292
Bsa29I ATCGAT 1 cut(s) 708
BsaAI YACGTR 1 cut(s) 1180
BsaHI GRCGYC 1 cut(s) 813
BsaJI CCNNGG 1 cut(s) 1304
BsaWI WCCGGW 2 cut(s) 863, 986
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 4 cut(s) 308, 446, 840, 1319
BseCI ATCGAT 1 cut(s) 708
BseDI CCNNGG 1 cut(s) 1304
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 402
BseNI ACTGG 4 cut(s) 308, 446, 840, 1319
BseSI GKGCMC 1 cut(s) 981
BseX3I CGGCCG 1 cut(s) 1077
BseXI GCAGC 1 cut(s) 1157
Bsh1285I CGRYCG 1 cut(s) 1080
BshFI GGCC 4 cut(s) 141, 1079, 1127, 1312
BshVI ATCGAT 1 cut(s) 708
BsiEI CGRYCG 1 cut(s) 1080
BsiHKAI GWGCWC 1 cut(s) 981
BsiHKCI CYCGRG 1 cut(s) 426
BsiSI CCGG 2 cut(s) 864, 987
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 2 cut(s) 268, 427
BsmI GAATGC 3 cut(s) 111, 227, 1031
BsnI GGCC 4 cut(s) 141, 1079, 1127, 1312
BsoBI CYCGRG 1 cut(s) 426
Bsp119I TTCGAA 1 cut(s) 1103
Bsp1286I GDGCHC 1 cut(s) 981
Bsp143I GATC 8 cut(s) 19, 195, 463, 633, 804, 1063, 1193, 1204
Bsp19I CCATGG 1 cut(s) 1304
BspACI CCGC 2 cut(s) 142, 1076
BspANI GGCC 4 cut(s) 141, 1079, 1127, 1312
BspDI ATCGAT 1 cut(s) 708
BspHI TCATGA 2 cut(s) 279, 801
BspLI GGNNCC 3 cut(s) 126, 985, 1195
BspPI GGATC 3 cut(s) 458, 1188, 1201
BspQI GCTCTTC 1 cut(s) 417
BspT104I TTCGAA 1 cut(s) 1103
BsrI ACTGG 4 cut(s) 308, 446, 840, 1319
BssECI CCNNGG 1 cut(s) 1304
BssMI GATC 8 cut(s) 19, 195, 463, 633, 804, 1063, 1193, 1204
BssNI GRCGYC 1 cut(s) 813
BssT1I CCWWGG 1 cut(s) 1304
Bst4CI ACNGT 1 cut(s) 956
Bst6I CTCTTC 2 cut(s) 417, 486
BstACI GRCGYC 1 cut(s) 813
BstBAI YACGTR 1 cut(s) 1180
BstBI TTCGAA 1 cut(s) 1103
BstDSI CCRYGG 1 cut(s) 1304
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 8 cut(s) 22, 198, 466, 636, 807, 1066, 1196, 1207
BstMAI GTCTC 2 cut(s) 268, 427
BstMBI GATC 8 cut(s) 19, 195, 463, 633, 804, 1063, 1193, 1204
BstMCI CGRYCG 1 cut(s) 1080
BstMWI GCNNNNNNNGC 1 cut(s) 1085
BstNSI RCATGY 1 cut(s) 1249
BstSFI CTRYAG 1 cut(s) 556
BstSLI GKGCMC 1 cut(s) 981
BstSNI TACGTA 1 cut(s) 1180
BstV1I GCAGC 1 cut(s) 1157
BstX2I RGATCY 2 cut(s) 633, 1193
BstXI CCANNNNNNTGG 1 cut(s) 1135
BstYI RGATCY 2 cut(s) 633, 1193
BstZI CGGCCG 1 cut(s) 1077
Bsu15I ATCGAT 1 cut(s) 708
BsuRI GGCC 4 cut(s) 141, 1079, 1127, 1312
BsuTUI ATCGAT 1 cut(s) 708
BtgI CCRYGG 1 cut(s) 1304
BtsCI GGATG 1 cut(s) 270
CciI TCATGA 2 cut(s) 279, 801
Cfr13I GGNCC 2 cut(s) 124, 837
ClaI ATCGAT 1 cut(s) 708
CseI GACGC 1 cut(s) 929
Csp6I GTAC 3 cut(s) 443, 516, 846
CviAII CATG 7 cut(s) 118, 280, 565, 802, 965, 1246, 1305
CviQI GTAC 3 cut(s) 443, 516, 846
DpnI GATC 8 cut(s) 21, 197, 465, 635, 806, 1065, 1195, 1206
DpnII GATC 8 cut(s) 19, 195, 463, 633, 804, 1063, 1193, 1204
DraI TTTAAA 1 cut(s) 694
EaeI YGGCCR 4 cut(s) 139, 1077, 1125, 1310
EagI CGGCCG 1 cut(s) 1077
Eam1104I CTCTTC 2 cut(s) 417, 486
EarI CTCTTC 2 cut(s) 417, 486
EclXI CGGCCG 1 cut(s) 1077
Eco105I TACGTA 1 cut(s) 1180
Eco130I CCWWGG 1 cut(s) 1304
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 2 cut(s) 124, 837
Eco52I CGGCCG 1 cut(s) 1077
Eco88I CYCGRG 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 576
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 1304
ErhI CCWWGG 1 cut(s) 1304
FaeI CATG 7 cut(s) 121, 283, 568, 805, 968, 1249, 1308
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FatI CATG 7 cut(s) 117, 279, 564, 801, 964, 1245, 1304
FauNDI CATATG 1 cut(s) 458
FbaI TGATCA 2 cut(s) 195, 804
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 3 cut(s) 142, 1077, 1171
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 3 cut(s) 142, 1077, 1171
FspBI CTAG 2 cut(s) 261, 849
GluI GCNGC 3 cut(s) 142, 1077, 1171
HaeIII GGCC 4 cut(s) 141, 1079, 1127, 1312
HapII CCGG 2 cut(s) 864, 987
HgaI GACGC 1 cut(s) 929
Hin1I GRCGYC 1 cut(s) 813
Hin1II CATG 7 cut(s) 121, 283, 568, 805, 968, 1249, 1308
HincII GTYRAC 3 cut(s) 43, 56, 1047
HindII GTYRAC 3 cut(s) 43, 56, 1047
HindIII AAGCTT 1 cut(s) 1225
HinfI GANTC 7 cut(s) 156, 276, 453, 665, 710, 1185, 1258
HpaI GTTAAC 1 cut(s) 1047
HpaII CCGG 2 cut(s) 864, 987
HphI GGTGA 4 cut(s) 234, 665, 878, 1328
Hpy166II GTNNAC 6 cut(s) 43, 56, 553, 721, 979, 1047
Hpy188I TCNGA 4 cut(s) 124, 195, 783, 1068
Hpy188III TCNNGA 6 cut(s) 271, 280, 426, 646, 802, 835
Hpy8I GTNNAC 6 cut(s) 43, 56, 553, 721, 979, 1047
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 2 cut(s) 1160, 1226
HpyCH4III ACNGT 1 cut(s) 956
HpyCH4IV ACGT 8 cut(s) 103, 367, 441, 549, 813, 969, 1017, 1179
HpyCH4V TGCA 7 cut(s) 87, 99, 502, 564, 979, 1000, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 1085
HpySE526I ACGT 8 cut(s) 103, 367, 441, 549, 813, 969, 1017, 1179
Hsp92I GRCGYC 1 cut(s) 813
Hsp92II CATG 7 cut(s) 121, 283, 568, 805, 968, 1249, 1308
Ksp22I TGATCA 2 cut(s) 195, 804
KspAI GTTAAC 1 cut(s) 1047
Kzo9I GATC 8 cut(s) 19, 195, 463, 633, 804, 1063, 1193, 1204
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 3 cut(s) 108, 1085, 1138
Lsp1109I GCAGC 1 cut(s) 1157
LweI GCATC 2 cut(s) 511, 1117
MaeI CTAG 2 cut(s) 261, 849
MaeII ACGT 8 cut(s) 103, 367, 441, 549, 813, 969, 1017, 1179
MaeIII GTNAC 5 cut(s) 437, 814, 857, 896, 1271
MalI GATC 8 cut(s) 21, 197, 465, 635, 806, 1065, 1195, 1206
MboI GATC 8 cut(s) 19, 195, 463, 633, 804, 1063, 1193, 1204
MboII GAAGA 8 cut(s) 404, 503, 572, 614, 628, 1067, 1070, 1276
MflI RGATCY 2 cut(s) 633, 1193
MhlI GDGCHC 1 cut(s) 981
MlsI TGGCCA 2 cut(s) 1127, 1312
MluCI AATT 8 cut(s) 177, 475, 576, 620, 669, 925, 1071, 1094
MluNI TGGCCA 2 cut(s) 1127, 1312
MlyI GAGTC 5 cut(s) 150, 270, 674, 1179, 1267
MmeI TCCRAC 3 cut(s) 86, 102, 430
MnlI CCTC 8 cut(s) 246, 299, 426, 487, 885, 956, 983, 1344
Mox20I TGGCCA 2 cut(s) 1127, 1312
MroXI GAANNNNTTC 1 cut(s) 797
MscI TGGCCA 2 cut(s) 1127, 1312
MseI TTAA 6 cut(s) 540, 546, 693, 915, 1046, 1292
MslI CAYNNNNRTG 2 cut(s) 116, 569
Msp20I TGGCCA 2 cut(s) 1127, 1312
MspI CCGG 2 cut(s) 864, 987
Mva1269I GAATGC 3 cut(s) 111, 227, 1031
MwoI GCNNNNNNNGC 1 cut(s) 1085
NcoI CCATGG 1 cut(s) 1304
NdeI CATATG 1 cut(s) 458
NdeII GATC 8 cut(s) 19, 195, 463, 633, 804, 1063, 1193, 1204
NlaIII CATG 7 cut(s) 121, 283, 568, 805, 968, 1249, 1308
NlaIV GGNNCC 3 cut(s) 126, 985, 1195
NmuCI GTSAC 2 cut(s) 437, 814
NspI RCATGY 1 cut(s) 1249
NspV TTCGAA 1 cut(s) 1103
PaeR7I CTCGAG 1 cut(s) 426
PagI TCATGA 2 cut(s) 279, 801
PciSI GCTCTTC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PctI GAATGC 3 cut(s) 111, 227, 1031
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 2 cut(s) 453, 710
PflMI CCANNNNNTGG 1 cut(s) 402
PkrI GCNGC 3 cut(s) 143, 1078, 1172
PleI GAGTC 5 cut(s) 150, 270, 673, 1179, 1266
PpsI GAGTC 5 cut(s) 150, 270, 673, 1179, 1266
Ppu21I YACGTR 1 cut(s) 1180
PshBI ATTAAT 1 cut(s) 540
PsiI TTATAA 2 cut(s) 774, 1211
Psp1406I AACGTT 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 126, 985, 1195
PspPI GGNCC 2 cut(s) 124, 837
PsuI RGATCY 2 cut(s) 633, 1193
RsaI GTAC 3 cut(s) 444, 517, 847
RsaNI GTAC 3 cut(s) 443, 516, 846
RseI CAYNNNNRTG 2 cut(s) 116, 569
SalI GTCGAC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 6 cut(s) 540, 546, 693, 915, 1046, 1292
SatI GCNGC 3 cut(s) 142, 1077, 1171
Sau3AI GATC 8 cut(s) 19, 195, 463, 633, 804, 1063, 1193, 1204
Sau96I GGNCC 2 cut(s) 124, 837
ScaI AGTACT 2 cut(s) 517, 847
SchI GAGTC 5 cut(s) 150, 270, 674, 1179, 1267
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 2 cut(s) 511, 1117
SfcI CTRYAG 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 1103
SinI GGWCC 2 cut(s) 124, 837
SlaI CTCGAG 1 cut(s) 426
SmiMI CAYNNNNRTG 2 cut(s) 116, 569
SmlI CTYRAG 3 cut(s) 248, 271, 426
SmoI CTYRAG 3 cut(s) 248, 271, 426
SnaBI TACGTA 1 cut(s) 1180
Sse9I AATT 8 cut(s) 177, 475, 576, 620, 669, 925, 1071, 1094
SsiI CCGC 2 cut(s) 142, 1076
SspI AATATT 3 cut(s) 544, 881, 1267
SspMI CTAG 2 cut(s) 261, 849
StyI CCWWGG 1 cut(s) 1304
TaaI ACNGT 1 cut(s) 956
TaiI ACGT 8 cut(s) 106, 370, 444, 552, 816, 972, 1020, 1182
TaqI TCGA 8 cut(s) 55, 154, 427, 645, 708, 755, 1103, 1261
TasI AATT 8 cut(s) 177, 475, 576, 620, 669, 925, 1071, 1094
TatI WGTACW 2 cut(s) 515, 845
TauI GCSGC 2 cut(s) 144, 1079
TfiI GAWTC 2 cut(s) 453, 710
Tru1I TTAA 6 cut(s) 540, 546, 693, 915, 1046, 1292
Tru9I TTAA 6 cut(s) 540, 546, 693, 915, 1046, 1292
TseFI GTSAC 2 cut(s) 437, 814
TseI GCWGC 1 cut(s) 1170
Tsp45I GTSAC 2 cut(s) 437, 814
TspGWI ACGGA 4 cut(s) 51, 425, 996, 1206
Van91I CCANNNNNTGG 1 cut(s) 402
VneI GTGCAC 1 cut(s) 977
VpaK11BI GGWCC 2 cut(s) 124, 837
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 2 cut(s) 576, 620
XceI RCATGY 1 cut(s) 1249
XhoI CTCGAG 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 2 cut(s) 261, 849
ZraI GACGTC 1 cut(s) 814
ZrmI AGTACT 2 cut(s) 517, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.