Rmu_sc0001298.1_g000055

Cell division control protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001298.1
OG0003461
Physical Location & Seq
Reverse (-)
176887 .. 183784
6898 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ctgttcaaagctcacaatcaagattggtcagaggagaaacaacagagcctcaagatcggcgatgggatcagtcagccgtttgctttctgctacgagacttttgtgccggaggcggtcactctctcttaccaagcgccggaggttttgctggggtctgtcgatttctcgacttcggcggacatttgggccgtcggctgcatcttcgctaagatggtgactgggggtgtactgtttgtcggaatcggtgatgatcctaatcaagctgataagcagcaattgcgagagattttcagacagctaggaaaaccgatgttgaatcagtgtccaggactcacttcgttgccggcttgggagacctaccaagaatgggaaggggaaaagatgaaagatcggttctatttggcaggagatttgccatcggatctgctggtagctacagtttatttggaacaagatggagttgaacttctatcggccaattttgatgcacctgaaggggacgagcctttggctttggacatggggagcatggggaagggtgaagtacagataacattggaagatactggactgttcatgctaatggtaactgcagcgcatgcggttattttgattgaagaaatcagaaagccagagagaacctccatcgcctctgcaatagtcgccgctccgtcaccgacctccagctatcctaagacgacgtacgatctctacgcctccatctccagtctaatgcccatattcaaagctcacaatctcctcagctacgtcgactactccatcacgccactgaagaaattcctctcgaatgacgccggagaaccaacgaccacgatcagcctgagctacgaggcctggatggctcacaaggccaaatttaagccgcccgagacgtcagaaacttggtcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

303

Amino Acids

33.42

Weight (kDa)

4.52

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 14 - 99 1.7e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 896
AccBSI CCGCTC 1 cut(s) 668
AccI GTMKAC 1 cut(s) 771
AciI CCGC 5 cut(s) 113, 176, 602, 666, 884
AclWI GGATC 3 cut(s) 74, 245, 429
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 2 cut(s) 797, 875
AcuI CTGAAG 2 cut(s) 513, 812
AcyI GRCGYC 2 cut(s) 813, 893
AfaI GTAC 3 cut(s) 228, 546, 704
AfiI CCNNNNNNNGG 2 cut(s) 136, 367
AgsI TTSAA 5 cut(s) 7, 316, 464, 617, 745
AjnI CCWGG 2 cut(s) 325, 854
AluBI AGCT 8 cut(s) 11, 263, 298, 434, 687, 749, 765, 846
AluI AGCT 8 cut(s) 11, 263, 298, 434, 687, 749, 765, 846
Alw26I GTCTC 3 cut(s) 89, 347, 884
AlwI GGATC 3 cut(s) 74, 245, 429
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 4 cut(s) 186, 474, 852, 870
ApeKI GCWGC 3 cut(s) 195, 271, 593
ApoI RAATTY 2 cut(s) 797, 875
Asp700I GAANNNNTTC 1 cut(s) 797
AspLEI GCGC 2 cut(s) 136, 598
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 4 cut(s) 226, 257, 551, 666
AvaI CYCGRG 1 cut(s) 887
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 3 cut(s) 182, 283, 605
BccI CCATC 8 cut(s) 56, 205, 424, 449, 653, 728, 788, 853
BceAI ACGGC 2 cut(s) 61, 173
BciT130I CCWGG 2 cut(s) 327, 856
BcoDI GTCTC 3 cut(s) 89, 347, 884
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 2 cut(s) 435, 591
BfoI RGCGCY 1 cut(s) 137
BglI GCCNNNNNGGC 1 cut(s) 860
BisI GCNGC 5 cut(s) 196, 272, 594, 666, 884
BlsI GCNGC 5 cut(s) 197, 273, 595, 667, 885
Bme1390I CCNGG 2 cut(s) 327, 856
BmeT110I CYCGRG 1 cut(s) 887
BmgT120I GGNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 327, 856
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 207, 475
BmuI ACTGGG 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 626, 658
BpmI CTGGAG 2 cut(s) 667, 709
Bpu10I CCTNAGC 2 cut(s) 761, 842
BpuEI CTTGAG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 255
BsaHI GRCGYC 2 cut(s) 813, 893
BsaI GGTCTC 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 367
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 3 cut(s) 223, 571, 726
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 2 cut(s) 327, 856
BseGI GGATG 1 cut(s) 864
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 136, 367
BseMII CTCAG 2 cut(s) 775, 833
BseNI ACTGG 3 cut(s) 223, 571, 726
BseRI GAGGAG 2 cut(s) 47, 749
BseXI GCAGC 3 cut(s) 182, 283, 605
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 4 cut(s) 188, 476, 854, 872
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 4 cut(s) 107, 137, 344, 816
BsiWI CGTACG 1 cut(s) 702
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 2 cut(s) 136, 367
BsmAI GTCTC 3 cut(s) 89, 347, 884
BsmBI CGTCTC 1 cut(s) 884
BsmFI GGGAC 1 cut(s) 512
BsnI GGCC 4 cut(s) 188, 476, 854, 872
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 887
Bsp143I GATC 7 cut(s) 54, 66, 250, 388, 421, 706, 834
BspACI CCGC 5 cut(s) 113, 176, 602, 666, 884
BspANI GGCC 4 cut(s) 188, 476, 854, 872
BspCNI CTCAG 2 cut(s) 774, 834
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 3 cut(s) 74, 245, 429
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 3 cut(s) 223, 571, 726
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 7 cut(s) 54, 66, 250, 388, 421, 706, 834
BssNI GRCGYC 2 cut(s) 813, 893
Bst2UI CCWGG 2 cut(s) 327, 856
Bst4CI ACNGT 3 cut(s) 231, 439, 573
BstACI GRCGYC 2 cut(s) 813, 893
BstAPI GCANNNNNTGC 2 cut(s) 277, 599
BstC8I GCNNGC 2 cut(s) 345, 600
BstDEI CTNAG 4 cut(s) 207, 693, 761, 842
BstF5I GGATG 1 cut(s) 864
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 2 cut(s) 136, 598
BstKTI GATC 7 cut(s) 57, 69, 253, 391, 424, 709, 837
BstMAI GTCTC 3 cut(s) 89, 347, 884
BstMBI GATC 7 cut(s) 54, 66, 250, 388, 421, 706, 834
BstMWI GCNNNNNNNGC 5 cut(s) 277, 599, 662, 860, 869
BstNI CCWGG 2 cut(s) 327, 856
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 325, 854
BstSFI CTRYAG 2 cut(s) 435, 591
BstV1I GCAGC 3 cut(s) 182, 283, 605
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 4 cut(s) 188, 476, 854, 872
BtgZI GCGATG 2 cut(s) 75, 631
BtsCI GGATG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 326, 788
Cac8I GCNNGC 2 cut(s) 345, 600
CfoI GCGC 2 cut(s) 136, 598
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 821
Csp6I GTAC 3 cut(s) 227, 545, 703
CviAII CATG 4 cut(s) 520, 529, 577, 599
CviQI GTAC 3 cut(s) 227, 545, 703
DdeI CTNAG 4 cut(s) 207, 693, 761, 842
DpnI GATC 7 cut(s) 56, 68, 252, 390, 423, 708, 836
DpnII GATC 7 cut(s) 54, 66, 250, 388, 421, 706, 834
EaeI YGGCCR 1 cut(s) 474
EciI GGCGGA 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 854
Eco31I GGTCTC 1 cut(s) 347
Eco57I CTGAAG 2 cut(s) 513, 812
Eco88I CYCGRG 1 cut(s) 887
EcoRII CCWGG 2 cut(s) 325, 854
Esp3I CGTCTC 1 cut(s) 884
FaeI CATG 4 cut(s) 523, 532, 580, 602
FaiI YATR 6 cut(s) 521, 530, 578, 600, 740, 910
FaqI GGGAC 1 cut(s) 512
FatI CATG 4 cut(s) 519, 528, 576, 598
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 5 cut(s) 196, 272, 594, 666, 884
FokI GGATG 1 cut(s) 871
Fsp4HI GCNGC 5 cut(s) 196, 272, 594, 666, 884
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 135, 597
GluI GCNGC 5 cut(s) 196, 272, 594, 666, 884
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 2 cut(s) 667, 709
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 4 cut(s) 188, 476, 854, 872
HapII CCGG 4 cut(s) 107, 137, 344, 816
HgaI GACGC 1 cut(s) 821
HhaI GCGC 2 cut(s) 136, 598
Hin1I GRCGYC 2 cut(s) 813, 893
Hin1II CATG 4 cut(s) 523, 532, 580, 602
Hin6I GCGC 2 cut(s) 134, 596
HinP1I GCGC 2 cut(s) 134, 596
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 3 cut(s) 240, 316, 330
HpaII CCGG 4 cut(s) 107, 137, 344, 816
HphI GGTGA 4 cut(s) 226, 257, 551, 666
Hpy166II GTNNAC 2 cut(s) 227, 772
Hpy188I TCNGA 6 cut(s) 31, 239, 293, 421, 626, 898
Hpy188III TCNNGA 4 cut(s) 20, 52, 166, 805
Hpy8I GTNNAC 2 cut(s) 227, 772
Hpy99I CGWCG 3 cut(s) 194, 703, 773
HpyAV CCTTC 3 cut(s) 365, 488, 529
HpyCH4III ACNGT 3 cut(s) 231, 439, 573
HpyCH4IV ACGT 3 cut(s) 701, 768, 893
HpyCH4V TGCA 4 cut(s) 198, 488, 593, 656
HpyF10VI GCNNNNNNNGC 5 cut(s) 277, 599, 662, 860, 869
HpyF3I CTNAG 4 cut(s) 207, 693, 761, 842
HpySE526I ACGT 3 cut(s) 701, 768, 893
Hsp92I GRCGYC 2 cut(s) 813, 893
Hsp92II CATG 4 cut(s) 523, 532, 580, 602
HspAI GCGC 2 cut(s) 134, 596
KroI GCCGGC 1 cut(s) 343
KroNI GCCGGC 1 cut(s) 345
Kzo9I GATC 7 cut(s) 54, 66, 250, 388, 421, 706, 834
LmnI GCTCC 2 cut(s) 525, 673
Lsp1109I GCAGC 3 cut(s) 182, 283, 605
LweI GCATC 2 cut(s) 207, 475
MaeI CTAG 1 cut(s) 299
MaeII ACGT 3 cut(s) 701, 768, 893
MaeIII GTNAC 4 cut(s) 115, 214, 586, 672
MalI GATC 7 cut(s) 56, 68, 252, 390, 423, 708, 836
MbiI CCGCTC 1 cut(s) 668
MboI GATC 7 cut(s) 54, 66, 250, 388, 421, 706, 834
MboII GAAGA 4 cut(s) 193, 572, 629, 805
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 1 cut(s) 421
MluCI AATT 4 cut(s) 275, 478, 797, 875
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 797
MseI TTAA 1 cut(s) 879
MslI CAYNNNNRTG 1 cut(s) 581
MspI CCGG 4 cut(s) 107, 137, 344, 816
MspR9I CCNGG 2 cut(s) 327, 856
MunI CAATTG 1 cut(s) 275
MvaI CCWGG 2 cut(s) 327, 856
MwoI GCNNNNNNNGC 5 cut(s) 277, 599, 662, 860, 869
NaeI GCCGGC 1 cut(s) 345
NdeII GATC 7 cut(s) 54, 66, 250, 388, 421, 706, 834
NgoMIV GCCGGC 1 cut(s) 343
NlaIII CATG 4 cut(s) 523, 532, 580, 602
NmuCI GTSAC 3 cut(s) 115, 214, 672
NspI RCATGY 1 cut(s) 602
PaeI GCATGC 1 cut(s) 602
PceI AGGCCT 1 cut(s) 854
PdiI GCCGGC 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 2 cut(s) 240, 316
Pfl23II CGTACG 1 cut(s) 702
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 5 cut(s) 197, 273, 595, 667, 885
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 325, 854
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 2 cut(s) 325, 854
PspLI CGTACG 1 cut(s) 702
PspPI GGNCC 1 cut(s) 186
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 3 cut(s) 228, 546, 704
RsaNI GTAC 3 cut(s) 227, 545, 703
RseI CAYNNNNRTG 1 cut(s) 581
SalI GTCGAC 1 cut(s) 770
SaqAI TTAA 1 cut(s) 879
SatI GCNGC 5 cut(s) 196, 272, 594, 666, 884
Sau3AI GATC 7 cut(s) 54, 66, 250, 388, 421, 706, 834
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 2 cut(s) 327, 856
SfaNI GCATC 2 cut(s) 207, 475
SfcI CTRYAG 2 cut(s) 435, 591
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SphI GCATGC 1 cut(s) 602
Sse9I AATT 4 cut(s) 275, 478, 797, 875
SseBI AGGCCT 1 cut(s) 854
SsiI CCGC 5 cut(s) 113, 176, 602, 666, 884
SspMI CTAG 1 cut(s) 299
StuI AGGCCT 1 cut(s) 854
StyD4I CCNGG 2 cut(s) 325, 854
TaaI ACNGT 3 cut(s) 231, 439, 573
TaiI ACGT 3 cut(s) 704, 771, 896
TaqI TCGA 4 cut(s) 159, 167, 771, 806
TasI AATT 4 cut(s) 275, 478, 797, 875
TatI WGTACW 2 cut(s) 226, 544
TauI GCSGC 2 cut(s) 668, 886
TfiI GAWTC 2 cut(s) 240, 316
Tru1I TTAA 1 cut(s) 879
Tru9I TTAA 1 cut(s) 879
TscAI CASTG 2 cut(s) 326, 795
TseFI GTSAC 3 cut(s) 115, 214, 672
TseI GCWGC 3 cut(s) 195, 271, 593
Tsp45I GTSAC 3 cut(s) 115, 214, 672
TspDTI ATGAA 2 cut(s) 398, 565
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 2 cut(s) 326, 795
XapI RAATTY 2 cut(s) 797, 875
XceI RCATGY 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 1 cut(s) 299
ZraI GACGTC 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.