Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001488.1

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Reverse (-)

109077 .. 110726

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgtccggaagatggcgaaccagtgacatatttgttgcaggttgtatggagcttccggtggctggttcggtagatttctggccggttcttcaggtggtgccgccggttctagactcctgggatctagttcttcaaggtgtgaggtggaagcagaaaaggcttcaaggggtgctggaaattgcagcggctaaatatacccacataaaccaaataaaggaggaagtttatggtacgttggtggcagataactccattgcagtaaaccatgatcacttcttgacctaccatattgaccttgatgtggatggtgaagccaactcctttgtgaagaacaatttcatgacaaaacgagttacaaacccaaacataccaaggaagagttactggaatgttgtaagcgaaaccgctaggacggaagcggatgcacggattcacctaggcttgaagccagccaacctggttgtggtaaattgttggggcactgacccaatatgcaacttaccttttttactgttttcatttgttatattgcaacccatattatctggtatcagagctcttgcgctaatgggaccaaagccaaaaggcggtggtgctccgccggtgacccatgacttaacggcggcagagttggattaccttgctcaacaatcgctatttgactctcagattcaaactatgcgtgagtctgtagaggagattcgtgctgctcaagaatcacttcgtgctcaaaatgatgaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

248

Amino Acids

27.63

Weight (kDa)

5.51

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	40 - 157	5.5e-18	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	7 cut(s)	101, 185, 405, 419, 588, 599, 623
AclWI	GGATC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	725
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	6 cut(s)	12, 62, 214, 301, 463, 587
AgsI	TTSAA	4 cut(s)	134, 164, 445, 674
AjnI	CCWGG	2 cut(s)	116, 456
AluBI	AGCT	2 cut(s)	52, 557
AluI	AGCT	2 cut(s)	52, 557
Alw21I	GWGCWC	3 cut(s)	559, 598, 730
AlwI	GGATC	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	182, 707
Asp700I	GAANNNNTTC	2 cut(s)	335, 720
AspA2I	CCTAGG	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	3 cut(s)	320, 425, 616
AvaII	GGWCC	1 cut(s)	572
AvrII	CCTAGG	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	482
BaeI	ACNNNNGTAYC	2 cut(s)	222, 255
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	559
Bbv12I	GWGCWC	3 cut(s)	559, 598, 730
BbvI	GCAGC	2 cut(s)	194, 694
BccI	CCATC	2 cut(s)	6, 299
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	2 cut(s)	118, 458
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	5 cut(s)	110, 125, 408, 437, 745
BfmI	CTRYAG	1 cut(s)	690
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	5 cut(s)	101, 183, 186, 624, 708
BlnI	CCTAGG	1 cut(s)	436
BlsI	GCNGC	5 cut(s)	102, 184, 187, 625, 709
Bme1390I	CCNGG	2 cut(s)	118, 458
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	2 cut(s)	99, 573
BmrFI	CCNGG	2 cut(s)	118, 458
BmsI	GCATC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	696
BsaJI	CCNNGG	3 cut(s)	117, 371, 436
BsaWI	WCCGGW	2 cut(s)	5, 55
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 62, 214, 301, 463, 587
Bse118I	RCCGGY	3 cut(s)	82, 103, 601
Bse1I	ACTGG	2 cut(s)	21, 389
Bse3DI	GCAATG	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	2 cut(s)	118, 458
BseDI	CCNNGG	3 cut(s)	117, 371, 436
BseGI	GGATG	2 cut(s)	310, 427
BseLI	CCNNNNNNNGG	6 cut(s)	12, 62, 214, 301, 463, 587
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	2 cut(s)	21, 389
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	194, 694
BshFI	GGCC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	3 cut(s)	559, 598, 730
BsiSI	CCGG	5 cut(s)	6, 56, 83, 104, 602
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	6 cut(s)	12, 62, 214, 301, 463, 587
BsmFI	GGGAC	1 cut(s)	585
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	4 cut(s)	482, 559, 598, 730
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	121, 268
BspACI	CCGC	7 cut(s)	101, 185, 405, 419, 588, 599, 623
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	679
BspEI	TCCGGA	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	99, 573
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	3 cut(s)	82, 103, 601
BsrI	ACTGG	2 cut(s)	21, 389
BssAI	RCCGGY	3 cut(s)	82, 103, 601
BssECI	CCNNGG	3 cut(s)	117, 371, 436
BssMI	GATC	2 cut(s)	121, 268
BssT1I	CCWWGG	2 cut(s)	371, 436
Bst2UI	CCWGG	2 cut(s)	118, 458
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	1 cut(s)	666
BstEII	GGTNACC	1 cut(s)	604
BstF5I	GGATG	2 cut(s)	310, 427
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	2 cut(s)	124, 271
BstMBI	GATC	2 cut(s)	121, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	2 cut(s)	118, 458
BstPI	GGTNACC	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	116, 456
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	194, 694
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	310, 427
BtsIMutI	CAGTG	2 cut(s)	28, 480
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	450
CciI	TCATGA	1 cut(s)	339
CfoI	GCGC	1 cut(s)	565
Cfr10I	RCCGGY	3 cut(s)	82, 103, 601
Cfr13I	GGNCC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	266, 340, 611
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	666
DpnI	GATC	2 cut(s)	123, 270
DpnII	GATC	2 cut(s)	121, 268
DraIII	CACNNNGTG	1 cut(s)	725
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	588
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	2 cut(s)	371, 436
Eco24I	GRGCYC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	604
EcoICRI	GAGCTC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	116, 456
EcoT14I	CCWWGG	2 cut(s)	371, 436
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	2 cut(s)	371, 436
FaeI	CATG	3 cut(s)	269, 343, 614
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	3 cut(s)	265, 339, 610
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	5 cut(s)	101, 183, 186, 624, 708
FokI	GGATG	2 cut(s)	317, 434
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	5 cut(s)	101, 183, 186, 624, 708
FspBI	CTAG	5 cut(s)	110, 125, 408, 437, 745
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	5 cut(s)	101, 183, 186, 624, 708
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	5 cut(s)	6, 56, 83, 104, 602
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	3 cut(s)	269, 343, 614
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	7 cut(s)	113, 430, 662, 670, 686, 700, 716
HpaII	CCGG	5 cut(s)	6, 56, 83, 104, 602
HphI	GGTGA	3 cut(s)	320, 425, 616
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	554, 669
Hpy188III	TCNNGA	5 cut(s)	6, 110, 277, 340, 713
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	6 cut(s)	38, 182, 257, 425, 495, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	666
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	269, 343, 614
HspAI	GCGC	1 cut(s)	563
Kpn2I	TCCGGA	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	121, 268
LmnI	GCTCC	2 cut(s)	49, 601
Lsp1109I	GCAGC	2 cut(s)	194, 694
LweI	GCATC	1 cut(s)	412
MabI	ACCWGGT	1 cut(s)	456
MaeI	CTAG	5 cut(s)	110, 125, 408, 437, 745
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	4 cut(s)	23, 352, 380, 604
MalI	GATC	2 cut(s)	123, 270
MboI	GATC	2 cut(s)	121, 268
MboII	GAAGA	5 cut(s)	21, 80, 122, 340, 388
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	4 cut(s)	482, 559, 598, 730
MluCI	AATT	3 cut(s)	177, 334, 469
MlyI	GAGTC	3 cut(s)	107, 656, 695
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	3 cut(s)	135, 211, 688
MroI	TCCGGA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	335, 720
MseI	TTAA	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	5 cut(s)	6, 56, 83, 104, 602
MspR9I	CCNGG	2 cut(s)	118, 458
MvaI	CCWGG	2 cut(s)	118, 458
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	2 cut(s)	121, 268
NlaIII	CATG	3 cut(s)	269, 343, 614
NlaIV	GGNNCC	2 cut(s)	99, 573
NmuCI	GTSAC	2 cut(s)	23, 604
PagI	TCATGA	1 cut(s)	339
PdmI	GAANNNNTTC	2 cut(s)	335, 720
PfeI	GAWTC	4 cut(s)	430, 670, 700, 716
PkrI	GCNGC	5 cut(s)	102, 184, 187, 625, 709
PleI	GAGTC	3 cut(s)	107, 656, 694
PpsI	GAGTC	3 cut(s)	107, 656, 694
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	116, 456
PspEI	GGTNACC	1 cut(s)	604
PspGI	CCWGG	2 cut(s)	116, 456
PspN4I	GGNNCC	2 cut(s)	99, 573
PspPI	GGNCC	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	5 cut(s)	101, 183, 186, 624, 708
Sau3AI	GATC	2 cut(s)	121, 268
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	3 cut(s)	107, 656, 695
ScrFI	CCNGG	2 cut(s)	118, 458
SduI	GDGCHC	4 cut(s)	482, 559, 598, 730
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	1 cut(s)	690
SgrAI	CRCCGGYG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	3 cut(s)	177, 334, 469
SsiI	CCGC	7 cut(s)	101, 185, 405, 419, 588, 599, 623
SspMI	CTAG	5 cut(s)	110, 125, 408, 437, 745
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	2 cut(s)	116, 456
StyI	CCWWGG	2 cut(s)	371, 436
TaaI	ACNGT	1 cut(s)	513
TaiI	ACGT	1 cut(s)	236
TasI	AATT	3 cut(s)	177, 334, 469
TauI	GCSGC	3 cut(s)	103, 188, 626
TfiI	GAWTC	4 cut(s)	430, 670, 700, 716
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	2 cut(s)	28, 487
TseFI	GTSAC	2 cut(s)	23, 604
TseI	GCWGC	2 cut(s)	182, 707
Tsp45I	GTSAC	2 cut(s)	23, 604
TspDTI	ATGAA	2 cut(s)	328, 507
TspGWI	ACGGA	2 cut(s)	428, 442
TspRI	CASTG	2 cut(s)	28, 487
VpaK11BI	GGWCC	1 cut(s)	572
XbaI	TCTAGA	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XmaJI	CCTAGG	1 cut(s)	436
XmnI	GAANNNNTTC	2 cut(s)	335, 720
XspI	CTAG	5 cut(s)	110, 125, 408, 437, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.