Rmu_sc0001863.1_g000004

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001863.1
OG0007526
Physical Location & Seq
Reverse (-)
8113 .. 10230
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ctgctcgagctccttctccgacccgagcctctcgagctccttctccaactcgagcctagatctgggctagaagctcctctgattgctgatgatgtttatgaaatcatcatgaagaatgcggtgtgtttggacagtgagatcatttacgaccgagactttgactacgactactttggtttcaagactcttgagaggtcttacctcttaaaggttcatgggaaggatgatgagagcttgaggaggtggaaggaacaacttcttggggccgtggattttgagagtgttggaggtattaaagttgaaaagatagatataattactgctgcaatggggcacgccttagccgcagaaggaggattctgcactggaagtgctagagttactgatcaccagcgattgagcagttctgggtacgtcttttctgcttctttgcccccatatcttgcgagtactgccattactgccattgatgttcttgaggagaaccctgatctgataacgaagttgaagaaaaacattacgtacgttactatggaaagttctgtgcttgatctcatttttcatgtgcatgtgtgttcctcttggtttgatatcgcacggccagtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

202

Amino Acids

22.61

Weight (kDa)

4.73

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_GDI PF02115 73 - 107 2.6e-07 RHO protein GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 345
AcoI YGGCCR 1 cut(s) 599
AfaI GTAC 3 cut(s) 413, 451, 524
AfiI CCNNNNNNNGG 2 cut(s) 62, 208
AgsI TTSAA 3 cut(s) 181, 302, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 4 cut(s) 10, 37, 74, 234
AluI AGCT 4 cut(s) 10, 37, 74, 234
Alw21I GWGCWC 2 cut(s) 12, 39
Alw26I GTCTC 1 cut(s) 147
Ama87I CYCGRG 4 cut(s) 5, 23, 32, 50
AoxI GGCC 2 cut(s) 264, 599
ApeKI GCWGC 1 cut(s) 323
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 380
AvaI CYCGRG 4 cut(s) 5, 23, 32, 50
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 2 cut(s) 12, 39
Bbv12I GWGCWC 2 cut(s) 12, 39
BbvI GCAGC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 251
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 3 cut(s) 57, 68, 375
BglII AGATCT 1 cut(s) 59
BisI GCNGC 2 cut(s) 324, 345
BlsI GCNGC 2 cut(s) 325, 346
BmcAI AGTACT 1 cut(s) 451
BmeT110I CYCGRG 4 cut(s) 5, 23, 32, 50
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 340
BpuEI CTTGAG 3 cut(s) 209, 256, 497
BsaAI YACGTR 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 208
Bse1I ACTGG 2 cut(s) 370, 602
Bse3DI GCAATG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 62, 208
BseMI GCAATG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 370, 602
BseRI GAGGAG 3 cut(s) 66, 253, 494
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 2 cut(s) 266, 601
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 12, 39
BsiHKCI CYCGRG 4 cut(s) 5, 23, 32, 50
BsiWI CGTACG 1 cut(s) 522
BslI CCNNNNNNNGG 2 cut(s) 62, 208
BsmAI GTCTC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 2 cut(s) 266, 601
BsoBI CYCGRG 4 cut(s) 5, 23, 32, 50
Bsp1286I GDGCHC 3 cut(s) 12, 39, 336
Bsp143I GATC 5 cut(s) 59, 138, 385, 490, 550
BspACI CCGC 2 cut(s) 119, 345
BspANI GGCC 2 cut(s) 266, 601
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 2 cut(s) 370, 602
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 5 cut(s) 59, 138, 385, 490, 550
Bst4CI ACNGT 1 cut(s) 134
BstBAI YACGTR 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 5 cut(s) 62, 141, 388, 493, 553
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 5 cut(s) 59, 138, 385, 490, 550
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 34, 344, 452, 461
BstNSI RCATGY 1 cut(s) 572
BstSLI GKGCMC 1 cut(s) 336
BstSNI TACGTA 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 2 cut(s) 266, 601
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 139, 363
Cac8I GCNNGC 1 cut(s) 336
CciI TCATGA 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 3 cut(s) 412, 450, 523
CviAII CATG 4 cut(s) 109, 215, 563, 569
CviQI GTAC 3 cut(s) 412, 450, 523
DdeI CTNAG 1 cut(s) 340
DpnI GATC 5 cut(s) 61, 140, 387, 492, 552
DpnII GATC 5 cut(s) 59, 138, 385, 490, 550
EaeI YGGCCR 1 cut(s) 599
Ecl136II GAGCTC 2 cut(s) 10, 37
Eco105I TACGTA 1 cut(s) 522
Eco24I GRGCYC 2 cut(s) 12, 39
Eco32I GATATC 1 cut(s) 592
Eco53kI GAGCTC 2 cut(s) 10, 37
Eco88I CYCGRG 4 cut(s) 5, 23, 32, 50
EcoICRI GAGCTC 2 cut(s) 10, 37
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 592
EcoT38I GRGCYC 2 cut(s) 12, 39
FaeI CATG 4 cut(s) 112, 218, 566, 572
FaiI YATR 9 cut(s) 99, 110, 216, 314, 439, 533, 564, 570, 607
FatI CATG 4 cut(s) 108, 214, 562, 568
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 324, 345
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 2 cut(s) 12, 39
Fsp4HI GCNGC 2 cut(s) 324, 345
FspBI CTAG 3 cut(s) 57, 68, 375
GluI GCNGC 2 cut(s) 324, 345
HaeIII GGCC 2 cut(s) 266, 601
Hin1II CATG 4 cut(s) 112, 218, 566, 572
HinfI GANTC 2 cut(s) 184, 357
HphI GGTGA 1 cut(s) 380
Hpy188I TCNGA 3 cut(s) 20, 81, 495
Hpy188III TCNNGA 5 cut(s) 32, 109, 181, 188, 476
HpyAV CCTTC 5 cut(s) 23, 50, 214, 241, 344
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 3 cut(s) 414, 521, 525
HpyCH4V TGCA 3 cut(s) 326, 363, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 344, 452, 461
HpyF3I CTNAG 1 cut(s) 340
HpySE526I ACGT 3 cut(s) 414, 521, 525
Hsp92II CATG 4 cut(s) 112, 218, 566, 572
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 5 cut(s) 59, 138, 385, 490, 550
LmnI GCTCC 3 cut(s) 15, 42, 79
LpnPI CCDG 5 cut(s) 48, 351, 393, 404, 501
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 3 cut(s) 57, 68, 375
MaeII ACGT 3 cut(s) 414, 521, 525
MaeIII GTNAC 2 cut(s) 379, 526
MalI GATC 5 cut(s) 61, 140, 387, 492, 552
MboI GATC 5 cut(s) 59, 138, 385, 490, 550
MboII GAAGA 2 cut(s) 124, 520
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 3 cut(s) 12, 39, 336
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 3 cut(s) 43, 70, 265
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 206, 294
MslI CAYNNNNRTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 4 cut(s) 34, 344, 452, 461
NdeII GATC 5 cut(s) 59, 138, 385, 490, 550
NlaIII CATG 4 cut(s) 112, 218, 566, 572
NlaIV GGNNCC 1 cut(s) 265
NspI RCATGY 1 cut(s) 572
PaeR7I CTCGAG 3 cut(s) 5, 32, 50
PagI TCATGA 1 cut(s) 108
PctI GAATGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 357
Pfl23II CGTACG 1 cut(s) 522
PkrI GCNGC 2 cut(s) 325, 346
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 522
Psp124BI GAGCTC 2 cut(s) 12, 39
PspLI CGTACG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 264
PspXI VCTCGAGB 2 cut(s) 5, 50
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 3 cut(s) 413, 451, 524
RsaNI GTAC 3 cut(s) 412, 450, 523
RseI CAYNNNNRTG 1 cut(s) 567
SacI GAGCTC 2 cut(s) 12, 39
SaqAI TTAA 2 cut(s) 206, 294
SatI GCNGC 2 cut(s) 324, 345
Sau3AI GATC 5 cut(s) 59, 138, 385, 490, 550
Sau96I GGNCC 1 cut(s) 264
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 1 cut(s) 178
SduI GDGCHC 3 cut(s) 12, 39, 336
Sfr274I CTCGAG 3 cut(s) 5, 32, 50
SlaI CTCGAG 3 cut(s) 5, 32, 50
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 6 cut(s) 5, 32, 50, 188, 235, 476
SmoI CTYRAG 6 cut(s) 5, 32, 50, 188, 235, 476
SnaBI TACGTA 1 cut(s) 522
Sse9I AATT 1 cut(s) 315
SsiI CCGC 2 cut(s) 119, 345
SspMI CTAG 3 cut(s) 57, 68, 375
SstI GAGCTC 2 cut(s) 12, 39
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 3 cut(s) 417, 524, 528
TaqI TCGA 3 cut(s) 6, 33, 51
TaqII GACCGA 1 cut(s) 165
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 449
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 2 cut(s) 206, 294
Tru9I TTAA 2 cut(s) 206, 294
TscAI CASTG 2 cut(s) 139, 370
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 4 cut(s) 114, 125, 203, 551
TspRI CASTG 2 cut(s) 139, 370
XagI CCTNNNNNAGG 1 cut(s) 206
XceI RCATGY 1 cut(s) 572
XhoI CTCGAG 3 cut(s) 5, 32, 50
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 57, 68, 375
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.