Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001935.1

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

71988 .. 73062

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 593 bp

atggcgacccttccatccacccattgctgccgtacttactcctcctcatcatcggcgtcgtattcttccgtacacagaagcctccagagggtggccgtttctccgagtccgcaacgtttcgtctccgccaaggtttctctgcagtctcaatccgtttcgcagcaaaatgttgtcagcatgcaagatgtggctccagcagtgaagcctgttgagaatgaaactgctttcaagaaattgaaagacgggttgctggcagctacgtctgggtctgtggaggaaagtaaagacgcaagtgggtttagttttgaagaatctgagtctactgtgagtattattgtggttggagcatctggggaccttgcaaagaagaagatattcccggctcttttcccactttattatgagggttgcctccctaaacactttactatttgtggttatgctcggagtaagatgactgatgcggagcttagaaccatggttagcaagacgcttacttgcagaattgaccagagggagaactgtggcgaaaagatggaccaatttcttgaaagatgtttctaccactctggtcagtatgattcacaggatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

197

Amino Acids

21.61

Weight (kDa)

7.57

Isoelectric Point (pI)

60.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	112 - 196	2.1e-20	Glucose-6-phosphate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	3 cut(s)	110, 126, 464
AclI	AACGTT	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	34, 72
AfiI	CCNNNNNNNGG	2 cut(s)	88, 91
AgsI	TTSAA	4 cut(s)	229, 238, 308, 551
AluBI	AGCT	2 cut(s)	257, 469
AluI	AGCT	2 cut(s)	257, 469
Alw26I	GTCTC	2 cut(s)	127, 150
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	27, 160, 254
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	355, 538
AsuC2I	CCSGG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	355, 538
BbvI	GCAGC	3 cut(s)	14, 172, 266
BccI	CCATC	2 cut(s)	22, 529
BceAI	ACGGC	2 cut(s)	15, 80
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	127, 150
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	3 cut(s)	28, 161, 255
BlsI	GCNGC	3 cut(s)	29, 162, 256
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	355, 538
BmgT120I	GGNCC	2 cut(s)	355, 538
BmiI	GGNNCC	2 cut(s)	192, 356
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	356, 451
BpmI	CTGGAG	2 cut(s)	68, 177
BpuMI	CCSGG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	129, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 91
Bse3DI	GCAATG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	129, 477
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	88, 91
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	3 cut(s)	14, 172, 266
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	88, 91
BsmAI	GTCTC	2 cut(s)	127, 150
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	589
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	3 cut(s)	110, 126, 464
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	192, 356
BspMAI	CTGCAG	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	129, 477
BssMI	GATC	1 cut(s)	589
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	129, 477
Bst4CI	ACNGT	2 cut(s)	325, 524
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	179, 252
BstDEI	CTNAG	2 cut(s)	315, 470
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	592
BstMAI	GTCTC	2 cut(s)	127, 150
BstMBI	GATC	1 cut(s)	589
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	14, 172, 266
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	179, 252
Cfr13I	GGNCC	2 cut(s)	355, 538
CseI	GACGC	3 cut(s)	45, 296, 499
Csp6I	GTAC	2 cut(s)	33, 71
CviAII	CATG	2 cut(s)	178, 478
CviJI	RGCY	7 cut(s)	81, 95, 191, 205, 257, 383, 469
CviKI_1	RGCY	7 cut(s)	81, 95, 191, 205, 257, 383, 469
CviQI	GTAC	2 cut(s)	33, 71
DdeI	CTNAG	2 cut(s)	315, 470
DpnI	GATC	1 cut(s)	591
DpnII	GATC	1 cut(s)	589
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	129, 477
Eco47I	GGWCC	2 cut(s)	355, 538
EcoO109I	RGGNCCY	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	129, 477
ErhI	CCWWGG	2 cut(s)	129, 477
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	2 cut(s)	181, 481
FaiI	YATR	5 cut(s)	179, 402, 441, 479, 579
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	177, 477
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	3 cut(s)	28, 161, 255
Fsp4HI	GCNGC	3 cut(s)	28, 161, 255
GluI	GCNGC	3 cut(s)	28, 161, 255
GsuI	CTGGAG	2 cut(s)	68, 177
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	3 cut(s)	45, 296, 499
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	181, 481
HinfI	GANTC	4 cut(s)	106, 311, 317, 581
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	73, 321
Hpy188I	TCNGA	3 cut(s)	105, 316, 447
Hpy188III	TCNNGA	3 cut(s)	85, 229, 548
Hpy8I	GTNNAC	2 cut(s)	73, 321
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	325, 524
HpyCH4IV	ACGT	2 cut(s)	115, 260
HpyCH4V	TGCA	4 cut(s)	142, 181, 362, 501
HpyF3I	CTNAG	2 cut(s)	315, 470
HpySE526I	ACGT	2 cut(s)	115, 260
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	181, 481
Kzo9I	GATC	1 cut(s)	589
LmnI	GCTCC	3 cut(s)	196, 344, 466
Lsp1109I	GCAGC	3 cut(s)	14, 172, 266
LweI	GCATC	2 cut(s)	356, 451
MaeII	ACGT	2 cut(s)	115, 260
MalI	GATC	1 cut(s)	591
MboI	GATC	1 cut(s)	589
MboII	GAAGA	4 cut(s)	57, 320, 379, 382
MluCI	AATT	3 cut(s)	233, 504, 542
MlyI	GAGTC	2 cut(s)	115, 326
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	8 cut(s)	52, 55, 81, 92, 268, 397, 422, 507
MroXI	GAANNNNTTC	1 cut(s)	374
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	380
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	1 cut(s)	589
NlaIII	CATG	2 cut(s)	181, 481
NlaIV	GGNNCC	2 cut(s)	192, 356
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	311, 581
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	29, 162, 256
PleI	GAGTC	2 cut(s)	114, 325
PpsI	GAGTC	2 cut(s)	114, 325
PpuMI	RGGWCCY	1 cut(s)	355
Psp1406I	AACGTT	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	192, 356
PspPI	GGNCC	2 cut(s)	355, 538
PspPPI	RGGWCCY	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	144
RsaI	GTAC	2 cut(s)	34, 72
RsaNI	GTAC	2 cut(s)	33, 71
SatI	GCNGC	3 cut(s)	28, 161, 255
Sau3AI	GATC	1 cut(s)	589
Sau96I	GGNCC	2 cut(s)	355, 538
SchI	GAGTC	2 cut(s)	115, 326
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	6 cut(s)	118, 135, 259, 263, 360, 471
SfaNI	GCATC	2 cut(s)	356, 451
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	355, 538
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	3 cut(s)	233, 504, 542
SsiI	CCGC	3 cut(s)	110, 126, 464
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	129, 477
TaaI	ACNGT	2 cut(s)	325, 524
TaiI	ACGT	2 cut(s)	118, 263
TasI	AATT	3 cut(s)	233, 504, 542
TfiI	GAWTC	2 cut(s)	311, 581
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	3 cut(s)	27, 160, 254
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	2 cut(s)	58, 142
TspRI	CASTG	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	355, 538
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.