Rmu_sc0002052.1_g000016

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002052.1
OG0003267
Physical Location & Seq
Reverse (-)
48563 .. 49504
942 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
atgcaatccatagccaaactctcaaactatcttatcaaacccacaaaccgcgccttctgttggttcctcaaaagctacaactcatggggtgcagccatacgcagctcttcttccccacataaagctctgcatatctattctcaaatgcactggctgtctgtacctttcgacagcttctccattctctttactctaaaatcatgtacccaattgcataaccacgcaaccattcaacaactccattcccatatcgttaaactcggatttgattctcacgtatatgtggccacttcacttctccatgcttacgtcgtcatctcgtttgtggatgcatgtgaactcttcgacgaaatgcctgagaagagcagtgtcacctggaacacaatgatttccgggtattcgaggaccgggaatgtagagagagcaagcctggtgtttgaggaaatgccactgagagatgtttcatcatggtgtgcaatggtcgcagcttatgtgaacaatggcaaacatgagcttgggttatcactctttcgggatatggtaatgggtgaagttggtgtgaaacctgaccaagggactgcagtagtggttttatctggctgtgctcacttgggttctgttgggttgttggtggggaagtcagttcatgggtttatggtcaagaaccggtgggagatgaatgtggagctcggtacagttttgattggcatgtatgcgaaatgtgggtttttgaagggagcagaacaggtttttgagttgatgcaagagaagaatgtgatggcttggaccgcattgatttgtggatcggcacaacatggatacagcaaagaagcattgtgtttgtttgagatgatgcaaaacagcggcgtaagacctaatgaactgacttttacaggagttctcagtgcttgtgtgaacacgggactagttgaggagggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

313

Amino Acids

34.61

Weight (kDa)

6.66

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 122 - 154 2.1e-07 PPR repeat family
PPR_1 PF12854 123 - 149 7.4e-07 PPR repeat
PPR PF01535 124 - 152 1.2e-08 PPR repeat
PPR_2 PF13041 153 - 203 6.8e-06 PPR repeat family
PPR_2 PF13041 257 - 306 4.4e-11 PPR repeat family
PPR_3 PF13812 258 - 306 7.6e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AciI CCGC 3 cut(s) 49, 789, 864
AclWI GGATC 1 cut(s) 811
AcoI YGGCCR 1 cut(s) 285
AfaI GTAC 3 cut(s) 162, 205, 694
AfiI CCNNNNNNNGG 2 cut(s) 60, 572
AgeI ACCGGT 1 cut(s) 666
AgsI TTSAA 2 cut(s) 233, 733
AhlI ACTAGT 1 cut(s) 925
AjnI CCWGG 2 cut(s) 374, 429
AluBI AGCT 7 cut(s) 75, 105, 125, 174, 488, 514, 688
AluI AGCT 7 cut(s) 75, 105, 125, 174, 488, 514, 688
Alw21I GWGCWC 2 cut(s) 607, 690
AlwI GGATC 1 cut(s) 811
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 3 cut(s) 92, 102, 485
AsiGI ACCGGT 1 cut(s) 666
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 405, 786
AsuC2I CCSGG 2 cut(s) 394, 409
AsuHPI GGTGA 2 cut(s) 364, 560
AvaII GGWCC 2 cut(s) 405, 786
BalI TGGCCA 1 cut(s) 287
BanII GRGCYC 1 cut(s) 690
Bbv12I GWGCWC 2 cut(s) 607, 690
BbvI GCAGC 3 cut(s) 104, 114, 497
BccI CCATC 1 cut(s) 772
BciT130I CCWGG 2 cut(s) 376, 431
BciVI GTATCC 1 cut(s) 812
BcnI CCSGG 2 cut(s) 394, 409
BcuI ACTAGT 1 cut(s) 925
BfaI CTAG 1 cut(s) 926
BfmI CTRYAG 1 cut(s) 579
BfuI GTATCC 1 cut(s) 812
BisI GCNGC 4 cut(s) 93, 103, 486, 865
BlsI GCNGC 4 cut(s) 94, 104, 487, 866
Bme1390I CCNGG 4 cut(s) 376, 394, 409, 431
Bme18I GGWCC 2 cut(s) 405, 786
BmgT120I GGNCC 2 cut(s) 405, 786
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 4 cut(s) 376, 394, 409, 431
BmsI GCATC 3 cut(s) 319, 750, 843
BpuMI CCSGG 2 cut(s) 394, 409
BsaAI YACGTR 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 571
BsaWI WCCGGW 1 cut(s) 666
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 572
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 2 cut(s) 376, 431
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 60, 572
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 3 cut(s) 348, 443, 916
BseNI ACTGG 1 cut(s) 155
BseXI GCAGC 3 cut(s) 104, 114, 497
BsgI GTGCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 287
BshTI ACCGGT 1 cut(s) 666
BsiHKAI GWGCWC 2 cut(s) 607, 690
BsiSI CCGG 3 cut(s) 393, 408, 667
BslFI GGGAC 2 cut(s) 589, 936
BslI CCNNNNNNNGG 2 cut(s) 60, 572
BsmFI GGGAC 2 cut(s) 589, 936
BsnI GGCC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 607, 690
Bsp143I GATC 1 cut(s) 803
BspACI CCGC 3 cut(s) 49, 789, 864
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 3 cut(s) 349, 444, 915
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 65
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 1 cut(s) 811
BspQI GCTCTTC 2 cut(s) 112, 356
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 571
Bst2UI CCWGG 2 cut(s) 376, 431
Bst4CI ACNGT 1 cut(s) 697
Bst6I CTCTTC 3 cut(s) 112, 347, 356
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 357, 452, 902
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 806
BstMBI GATC 1 cut(s) 803
BstMWI GCNNNNNNNGC 2 cut(s) 482, 788
BstNI CCWGG 2 cut(s) 376, 431
BstNSI RCATGY 2 cut(s) 336, 712
BstSCI CCNGG 4 cut(s) 374, 392, 407, 429
BstSFI CTRYAG 1 cut(s) 579
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 3 cut(s) 104, 114, 497
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 4 cut(s) 148, 373, 449, 910
Cac8I GCNNGC 1 cut(s) 427
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 666
Cfr13I GGNCC 2 cut(s) 405, 786
Csp6I GTAC 3 cut(s) 161, 204, 693
CspAI ACCGGT 1 cut(s) 666
CviAII CATG 9 cut(s) 84, 201, 302, 333, 468, 509, 647, 709, 815
CviQI GTAC 3 cut(s) 161, 204, 693
DdeI CTNAG 3 cut(s) 357, 452, 902
DpnI GATC 1 cut(s) 805
DpnII GATC 1 cut(s) 803
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 3 cut(s) 112, 347, 356
EarI CTCTTC 3 cut(s) 112, 347, 356
Ecl136II GAGCTC 1 cut(s) 688
Eco130I CCWWGG 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 690
Eco47I GGWCC 2 cut(s) 405, 786
Eco53kI GAGCTC 1 cut(s) 688
EcoICRI GAGCTC 1 cut(s) 688
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoRII CCWGG 2 cut(s) 374, 429
EcoT14I CCWWGG 1 cut(s) 571
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 9 cut(s) 87, 204, 305, 336, 471, 512, 650, 712, 818
FaqI GGGAC 2 cut(s) 589, 936
FatI CATG 9 cut(s) 83, 200, 301, 332, 467, 508, 646, 708, 814
Fnu4HI GCNGC 4 cut(s) 93, 103, 486, 865
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 4 cut(s) 93, 103, 486, 865
FspBI CTAG 1 cut(s) 926
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 93, 103, 486, 865
HaeIII GGCC 1 cut(s) 287
HapII CCGG 3 cut(s) 393, 408, 667
HhaI GCGC 1 cut(s) 53
Hin1II CATG 9 cut(s) 87, 204, 305, 336, 471, 512, 650, 712, 818
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 269
HpaII CCGG 3 cut(s) 393, 408, 667
HphI GGTGA 2 cut(s) 364, 560
Hpy166II GTNNAC 3 cut(s) 338, 496, 916
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 2 cut(s) 533, 661
Hpy8I GTNNAC 3 cut(s) 338, 496, 916
Hpy99I CGWCG 2 cut(s) 314, 350
HpyAV CCTTC 2 cut(s) 64, 727
HpyCH4III ACNGT 1 cut(s) 697
HpyCH4IV ACGT 2 cut(s) 276, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 788
HpyF3I CTNAG 3 cut(s) 357, 452, 902
HpySE526I ACGT 2 cut(s) 276, 309
Hsp92II CATG 9 cut(s) 87, 204, 305, 336, 471, 512, 650, 712, 818
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 803
LguI GCTCTTC 2 cut(s) 112, 356
LmnI GCTCC 2 cut(s) 685, 737
Lsp1109I GCAGC 3 cut(s) 104, 114, 497
LweI GCATC 3 cut(s) 319, 750, 843
MaeI CTAG 1 cut(s) 926
MaeII ACGT 2 cut(s) 276, 309
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 805
MboI GATC 1 cut(s) 803
MboII GAAGA 5 cut(s) 99, 102, 334, 373, 781
MfeI CAATTG 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 607, 690
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 287
MnlI CCTC 5 cut(s) 77, 396, 433, 925, 928
Mox20I TGGCCA 1 cut(s) 287
Mph1103I ATGCAT 1 cut(s) 334
MscI TGGCCA 1 cut(s) 287
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 2 cut(s) 279, 469
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 864
MspI CCGG 3 cut(s) 393, 408, 667
MspR9I CCNGG 4 cut(s) 376, 394, 409, 431
MunI CAATTG 1 cut(s) 209
MvaI CCWGG 2 cut(s) 376, 431
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 482, 788
NciI CCSGG 2 cut(s) 394, 409
NdeII GATC 1 cut(s) 803
NlaIII CATG 9 cut(s) 87, 204, 305, 336, 471, 512, 650, 712, 818
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 2 cut(s) 336, 712
PciSI GCTCTTC 2 cut(s) 112, 356
PfeI GAWTC 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 666
PkrI GCNGC 4 cut(s) 94, 104, 487, 866
Ppu21I YACGTR 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 690
Psp6I CCWGG 2 cut(s) 374, 429
PspGI CCWGG 2 cut(s) 374, 429
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 2 cut(s) 405, 786
PstI CTGCAG 1 cut(s) 583
RsaI GTAC 3 cut(s) 162, 205, 694
RsaNI GTAC 3 cut(s) 161, 204, 693
RseI CAYNNNNRTG 2 cut(s) 279, 469
SacI GAGCTC 1 cut(s) 690
SapI GCTCTTC 2 cut(s) 112, 356
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 4 cut(s) 93, 103, 486, 865
Sau3AI GATC 1 cut(s) 803
Sau96I GGNCC 2 cut(s) 405, 786
ScrFI CCNGG 4 cut(s) 376, 394, 409, 431
SduI GDGCHC 2 cut(s) 607, 690
SfaNI GCATC 3 cut(s) 319, 750, 843
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 2 cut(s) 405, 786
SmiMI CAYNNNNRTG 2 cut(s) 279, 469
SpeI ACTAGT 1 cut(s) 925
Sse9I AATT 1 cut(s) 209
SsiI CCGC 3 cut(s) 49, 789, 864
SspMI CTAG 1 cut(s) 926
SstI GAGCTC 1 cut(s) 690
StyD4I CCNGG 4 cut(s) 374, 392, 407, 429
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 1 cut(s) 697
TaiI ACGT 2 cut(s) 279, 312
TaqI TCGA 3 cut(s) 168, 345, 401
TasI AATT 1 cut(s) 209
TauI GCSGC 1 cut(s) 867
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 4 cut(s) 155, 373, 456, 910
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 3 cut(s) 92, 102, 485
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 4 cut(s) 453, 635, 692, 894
TspRI CASTG 4 cut(s) 155, 373, 456, 910
VpaK11BI GGWCC 2 cut(s) 405, 786
XagI CCTNNNNNAGG 1 cut(s) 570
XceI RCATGY 2 cut(s) 336, 712
XspI CTAG 1 cut(s) 926
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.