Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002245.1

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Forward (+)

106132 .. 108244

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgaaaaccgaaccttcgacggtgagatgggggccggaggtggccggaatggccgggaatcggccaaaatccaaaactgcaaccggggaggaaattcgttcgatccgagcttttccggccaaatcgtccaaagatgcttccacagacgtgaccggggaaggaaaccgagcttgggggtggccggattacgtccggaggcggccggaagaggaagaaatcggaggggaagcgaatcggccgaaagaggaagggagagtcggggagagagaaagagaatgggggggtgggtttccgtgggctcttaccgcctcggtttccaactacacgttgtctgctgacgacggccgattcgtcgtcgttttggataaggcgtgctatattcagttcgagtacttggtgaactacgagacccgcatcaccggaaagctgagttacggcgcgatcacggagctgaagggcattcaggtccaaagattgttcttgtggttcgacgtcgatgagatcagggtcgatttgccgccgtccgatagtatttacttcaccgttgggatcatcaacaagaagctcgatgtcgatcagttccagagtgttcattcttgccgggacgggctttcgggttcgggttcgggttcttgcctcgggtcgttgaaacgggtcattcagcttccatctccactgaaagaagagataaagatgctacttactgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

236

Amino Acids

26.29

Weight (kDa)

5.52

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	101 - 195	6.2e-25	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	495
AccII	CGCG	1 cut(s)	440
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	4 cut(s)	199, 306, 412, 518
AclWI	GGATC	2 cut(s)	97, 557
AcoI	YGGCCR	8 cut(s)	42, 51, 62, 117, 179, 200, 236, 343
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	473
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	60, 172
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	649
AjiI	CACGTC	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	6 cut(s)	110, 170, 427, 451, 565, 664
AluI	AGCT	6 cut(s)	110, 170, 427, 451, 565, 664
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	2 cut(s)	97, 557
Ama87I	CYCGRG	1 cut(s)	638
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	9 cut(s)	32, 42, 51, 62, 117, 179, 200, 236, 343
ApoI	RAATTY	1 cut(s)	93
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	32, 466
AsuC2I	CCSGG	4 cut(s)	55, 85, 154, 602
AsuHPI	GGTGA	4 cut(s)	34, 409, 409, 532
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	301
BccI	CCATC	2 cut(s)	21, 676
BceAI	ACGGC	3 cut(s)	358, 451, 505
BcnI	CCSGG	4 cut(s)	55, 85, 154, 602
BcoDI	GTCTC	1 cut(s)	401
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	2 cut(s)	200, 518
BlsI	GCNGC	2 cut(s)	201, 519
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	4 cut(s)	55, 85, 154, 602
Bme18I	GGWCC	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	32, 466
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	4 cut(s)	55, 85, 154, 602
BmsI	GCATC	3 cut(s)	124, 423, 684
BpuMI	CCSGG	4 cut(s)	55, 85, 154, 602
BsaBI	GATNNNNATC	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	5 cut(s)	84, 153, 293, 309, 637
BsaWI	WCCGGW	2 cut(s)	192, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 172
Bse8I	GATNNNNATC	1 cut(s)	573
BseAI	TCCGGA	1 cut(s)	192
BseDI	CCNNGG	5 cut(s)	84, 153, 293, 309, 637
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	60, 172
BseMII	CTCAG	2 cut(s)	419, 696
BseX3I	CGGCCG	3 cut(s)	200, 236, 343
Bsh1236I	CGCG	1 cut(s)	440
Bsh1285I	CGRYCG	3 cut(s)	203, 239, 346
BshFI	GGCC	9 cut(s)	34, 44, 53, 64, 119, 181, 202, 238, 345
BsiEI	CGRYCG	3 cut(s)	203, 239, 346
BsiHKCI	CYCGRG	1 cut(s)	638
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	2 cut(s)	60, 172
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	9 cut(s)	34, 44, 53, 64, 119, 181, 202, 238, 345
Bso31I	GGTCTC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	102, 441, 501, 549, 574
BspACI	CCGC	4 cut(s)	199, 306, 412, 518
BspANI	GGCC	9 cut(s)	34, 44, 53, 64, 119, 181, 202, 238, 345
BspCNI	CTCAG	2 cut(s)	420, 697
BspEI	TCCGGA	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	97, 557
BspTNI	GGTCTC	1 cut(s)	401
BssECI	CCNNGG	5 cut(s)	84, 153, 293, 309, 637
BssMI	GATC	5 cut(s)	102, 441, 501, 549, 574
BssNI	GRCGYC	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	22, 544
Bst6I	CTCTTC	2 cut(s)	201, 678
BstACI	GRCGYC	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	428, 705
BstDSI	CCRYGG	1 cut(s)	293
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	5 cut(s)	105, 444, 504, 552, 577
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	5 cut(s)	102, 441, 501, 549, 574
BstMCI	CGRYCG	3 cut(s)	203, 239, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 116, 305
BstSCI	CCNGG	4 cut(s)	53, 83, 152, 600
BstUI	CGCG	1 cut(s)	440
BstZI	CGGCCG	3 cut(s)	200, 236, 343
BsuRI	GGCC	9 cut(s)	34, 44, 53, 64, 119, 181, 202, 238, 345
BtgI	CCRYGG	1 cut(s)	293
BtrI	CACGTC	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	373
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	32, 466
Csp6I	GTAC	1 cut(s)	391
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	428, 705
DpnI	GATC	5 cut(s)	104, 443, 503, 551, 576
DpnII	GATC	5 cut(s)	102, 441, 501, 549, 574
EaeI	YGGCCR	8 cut(s)	42, 51, 62, 117, 179, 200, 236, 343
EagI	CGGCCG	3 cut(s)	200, 236, 343
Eam1104I	CTCTTC	2 cut(s)	201, 678
EarI	CTCTTC	2 cut(s)	201, 678
EclXI	CGGCCG	3 cut(s)	200, 236, 343
Eco24I	GRGCYC	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	466
Eco52I	CGGCCG	3 cut(s)	200, 236, 343
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	638
EcoT38I	GRGCYC	1 cut(s)	301
FaiI	YATR	1 cut(s)	378
FaqI	GGGAC	1 cut(s)	617
FauI	CCCGC	1 cut(s)	419
Fnu4HI	GCNGC	2 cut(s)	200, 518
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	200, 518
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	2 cut(s)	200, 518
HaeIII	GGCC	9 cut(s)	34, 44, 53, 64, 119, 181, 202, 238, 345
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	492
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	4 cut(s)	58, 232, 255, 348
HphI	GGTGA	4 cut(s)	34, 409, 409, 532
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	3 cut(s)	107, 221, 526
Hpy188III	TCNNGA	2 cut(s)	193, 583
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	6 cut(s)	22, 344, 356, 359, 494, 497
HpyAV	CCTTC	4 cut(s)	24, 152, 242, 448
HpyCH4III	ACNGT	2 cut(s)	22, 544
HpyCH4IV	ACGT	4 cut(s)	147, 189, 326, 492
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 116, 305
HpyF3I	CTNAG	2 cut(s)	428, 705
HpySE526I	ACGT	4 cut(s)	147, 189, 326, 492
Hsp92I	GRCGYC	1 cut(s)	492
HspAI	GCGC	1 cut(s)	438
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	5 cut(s)	102, 441, 501, 549, 574
LmnI	GCTCC	1 cut(s)	448
LweI	GCATC	3 cut(s)	124, 423, 684
MaeII	ACGT	4 cut(s)	147, 189, 326, 492
MaeIII	GTNAC	2 cut(s)	148, 431
MalI	GATC	5 cut(s)	104, 443, 503, 551, 576
MboI	GATC	5 cut(s)	102, 441, 501, 549, 574
MboII	GAAGA	3 cut(s)	218, 224, 695
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	31, 82, 189, 202, 215, 238, 319, 647
MroI	TCCGGA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	4 cut(s)	55, 85, 154, 602
Mva1269I	GAATGC	1 cut(s)	459
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	50, 116, 305
NciI	CCSGG	4 cut(s)	55, 85, 154, 602
NdeII	GATC	5 cut(s)	102, 441, 501, 549, 574
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	2 cut(s)	103, 348
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	58, 232, 348
PkrI	GCNGC	2 cut(s)	201, 519
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	32, 466
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	146
SatI	GCNGC	2 cut(s)	200, 518
Sau3AI	GATC	5 cut(s)	102, 441, 501, 549, 574
Sau96I	GGNCC	2 cut(s)	32, 466
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	4 cut(s)	55, 85, 154, 602
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	3 cut(s)	124, 423, 684
SfiI	GGCCNNNNNGGCC	1 cut(s)	50
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	4 cut(s)	199, 306, 412, 518
StyD4I	CCNGG	4 cut(s)	53, 83, 152, 600
TaaI	ACNGT	2 cut(s)	22, 544
TaiI	ACGT	4 cut(s)	150, 192, 329, 495
TaqI	TCGA	8 cut(s)	17, 101, 387, 489, 495, 510, 567, 573
TasI	AATT	1 cut(s)	93
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	2 cut(s)	202, 520
TfiI	GAWTC	3 cut(s)	58, 232, 348
TscAI	CASTG	1 cut(s)	681
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	17, 581
TspGWI	ACGGA	2 cut(s)	282, 461
TspRI	CASTG	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	493
ZrmI	AGTACT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.