Rmu_sc0002396.1_g000009

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002396.1
OG0006934
Physical Location & Seq
Forward (+)
50099 .. 51891
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
atgaccaccaattgtagcaattgcaagacgaggcttcctcatctaacctctcatccaacctcaccaataccccgtgttactcaatatcgctgcttctgtggttatgttaatctgattgagacgaccaagccagctgatcttgcccagcaccaccacgaaggtcagcagcagcagcatagccatcggagacgagcttccagctggattaattcgcatataaagggatcatcaccatcatcgtcgtccaagaactgtaaacccccatcaccgtcaccgtcatcgtcatcgtcatcaaccagcttaataaaaagctgtggcagaaagcgcgcacttctttgcggagtgacataccaggagcgcaagtacaaactcaaaggcacttacaatgatgtcaataacatgaaacacttgttgatcaacaccttttgttttccacccgactgcattcgcatactatcagaagaagaagggcaaccgaaagagctgactcccacaaagaagaacatagagaaatccctgaaatggcttgtggaggggtgccaggcaggagattcgttggtgttctacttctcaggacacggactacgacagcccgattttaaagacgacgaggttgacgggttcgacgagactatctgccctcttgatttcatggaagagggcatgatccttgacaatgatatcaattcaaccatcgttcgcccactcaaggagggcgtcacactacatgctatcgttgatgcttgtcatagtggaacaattcttgatctactctacgtctacgaccataaagggaacaagtggaaggataatagtcctccttctggtgctaggaaaagtacaagtggagggttggcaatttgcatcagtgcctgcgaagacgataaaatggcagcagatacaactgcttttgatcgaaatgtaatgaatggtgccatgacatacactcttattgaaattatgaagaactactctggtaaaggcattacgtatggggaactgctcgacttgatgtttgatcaaattcaaaggattaatggggatagatgcctcaattccagaatcttgagaaaagtttttcgacacaaaatcattcagcaacctttattgtcatcgtccgaagacttcgatgtatacaagaagaaatttctcttgtag

Protein Analysis

385

Amino Acids

43.26

Weight (kDa)

8.52

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 107 - 343 2.2e-30 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 537, 932
AccI GTMKAC 2 cut(s) 780, 1134
AccII CGCG 1 cut(s) 327
AciI CCGC 1 cut(s) 339
AclWI GGATC 2 cut(s) 232, 661
AcsI RAATTY 2 cut(s) 1023, 1145
AcyI GRCGYC 1 cut(s) 717
AfaI GTAC 2 cut(s) 365, 841
AfiI CCNNNNNNNGG 3 cut(s) 522, 709, 824
AgsI TTSAA 3 cut(s) 690, 956, 1028
AjnI CCWGG 2 cut(s) 351, 540
AluBI AGCT 6 cut(s) 134, 194, 201, 300, 312, 484
AluI AGCT 6 cut(s) 134, 194, 201, 300, 312, 484
Alw26I GTCTC 3 cut(s) 113, 181, 623
AlwI GGATC 2 cut(s) 232, 661
AlwNI CAGNNNCTG 1 cut(s) 873
ApeKI GCWGC 5 cut(s) 90, 166, 169, 172, 893
ApoI RAATTY 2 cut(s) 1023, 1145
ArsI GACNNNNNNTTYG 2 cut(s) 998, 1030
AseI ATTAAT 2 cut(s) 207, 1035
AspLEI GCGC 3 cut(s) 327, 329, 360
AsuHPI GGTGA 4 cut(s) 54, 222, 258, 264
BanI GGYRCC 2 cut(s) 537, 932
BbsI GAAGAC 2 cut(s) 885, 1128
BbvI GCAGC 5 cut(s) 77, 178, 181, 184, 905
BccI CCATC 4 cut(s) 189, 241, 271, 701
BcgI CGANNNNNNTGC 4 cut(s) 164, 198, 534, 568
BciT130I CCWGG 2 cut(s) 353, 542
BclI TGATCA 2 cut(s) 414, 1018
BcoDI GTCTC 3 cut(s) 113, 181, 623
BfaI CTAG 1 cut(s) 831
BisI GCNGC 5 cut(s) 91, 167, 170, 173, 894
BlsI GCNGC 5 cut(s) 92, 168, 171, 174, 895
Bme1390I CCNGG 2 cut(s) 353, 542
BmiI GGNNCC 2 cut(s) 539, 934
BmrFI CCNGG 2 cut(s) 353, 542
BmsI GCATC 3 cut(s) 730, 873, 1037
BpiI GAAGAC 2 cut(s) 885, 1128
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpuEI CTTGAG 2 cut(s) 692, 1087
BsaAI YACGTR 1 cut(s) 990
BsaHI GRCGYC 1 cut(s) 717
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 522, 709, 824
BseBI CCWGG 2 cut(s) 353, 542
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 3 cut(s) 522, 709, 824
BseMII CTCAG 1 cut(s) 585
BsePI GCGCGC 1 cut(s) 325
BseXI GCAGC 5 cut(s) 77, 178, 181, 184, 905
BseYI CCCAGC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 327
BshNI GGYRCC 2 cut(s) 537, 932
BslI CCNNNNNNNGG 3 cut(s) 522, 709, 824
BsmAI GTCTC 3 cut(s) 113, 181, 623
BsmBI CGTCTC 2 cut(s) 113, 181
BsmI GAATGC 1 cut(s) 444
Bsp143I GATC 7 cut(s) 136, 224, 414, 666, 766, 913, 1018
BspACI CCGC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 584
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 539, 934
BspPI GGATC 2 cut(s) 232, 661
BspT107I GGYRCC 2 cut(s) 537, 932
BssHII GCGCGC 1 cut(s) 325
BssMI GATC 7 cut(s) 136, 224, 414, 666, 766, 913, 1018
BssNAI GTATAC 1 cut(s) 1135
BssNI GRCGYC 1 cut(s) 717
Bst1107I GTATAC 1 cut(s) 1135
Bst2UI CCWGG 2 cut(s) 353, 542
Bst4CI ACNGT 3 cut(s) 254, 270, 276
Bst6I CTCTTC 1 cut(s) 651
BstACI GRCGYC 1 cut(s) 717
BstBAI YACGTR 1 cut(s) 990
BstC8I GCNNGC 3 cut(s) 132, 327, 874
BstDEI CTNAG 1 cut(s) 571
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 327
BstHHI GCGC 3 cut(s) 327, 329, 360
BstKTI GATC 7 cut(s) 139, 227, 417, 669, 769, 916, 1021
BstMAI GTCTC 3 cut(s) 113, 181, 623
BstMBI GATC 7 cut(s) 136, 224, 414, 666, 766, 913, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 140, 172, 324
BstNI CCWGG 2 cut(s) 353, 542
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 2 cut(s) 351, 540
BstSNI TACGTA 1 cut(s) 990
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 5 cut(s) 77, 178, 181, 184, 905
BstV2I GAAGAC 2 cut(s) 885, 1128
BstZ17I GTATAC 1 cut(s) 1135
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 874
Cac8I GCNNGC 3 cut(s) 132, 327, 874
CaiI CAGNNNCTG 1 cut(s) 873
CfoI GCGC 3 cut(s) 327, 329, 360
CseI GACGC 1 cut(s) 706
Csp6I GTAC 2 cut(s) 364, 840
CviAII CATG 5 cut(s) 400, 652, 664, 728, 937
CviQI GTAC 2 cut(s) 364, 840
DdeI CTNAG 1 cut(s) 571
DpnI GATC 7 cut(s) 138, 226, 416, 668, 768, 915, 1020
DpnII GATC 7 cut(s) 136, 224, 414, 666, 766, 913, 1018
DraI TTTAAA 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco105I TACGTA 1 cut(s) 990
Eco32I GATATC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 351, 540
EcoRV GATATC 1 cut(s) 682
Esp3I CGTCTC 2 cut(s) 113, 181
FaeI CATG 5 cut(s) 403, 655, 667, 731, 940
FatI CATG 5 cut(s) 399, 651, 663, 727, 936
FbaI TGATCA 2 cut(s) 414, 1018
FblI GTMKAC 2 cut(s) 780, 1134
Fnu4HI GCNGC 5 cut(s) 91, 167, 170, 173, 894
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 5 cut(s) 91, 167, 170, 173, 894
FspBI CTAG 1 cut(s) 831
GlaI GCGC 3 cut(s) 326, 328, 359
GluI GCNGC 5 cut(s) 91, 167, 170, 173, 894
GsaI CCCAGC 1 cut(s) 148
HgaI GACGC 1 cut(s) 706
HhaI GCGC 3 cut(s) 327, 329, 360
Hin1I GRCGYC 1 cut(s) 717
Hin1II CATG 5 cut(s) 403, 655, 667, 731, 940
Hin6I GCGC 3 cut(s) 325, 327, 358
HinP1I GCGC 3 cut(s) 325, 327, 358
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 3 cut(s) 487, 551, 1062
HphI GGTGA 4 cut(s) 54, 222, 258, 264
Hpy166II GTNNAC 4 cut(s) 257, 616, 781, 1135
Hpy188I TCNGA 4 cut(s) 114, 186, 460, 1120
Hpy188III TCNNGA 5 cut(s) 573, 644, 764, 1059, 1066
Hpy8I GTNNAC 4 cut(s) 257, 616, 781, 1135
Hpy99I CGWCG 3 cut(s) 244, 611, 629
HpyAV CCTTC 4 cut(s) 152, 461, 799, 831
HpyCH4III ACNGT 3 cut(s) 254, 270, 276
HpyCH4IV ACGT 2 cut(s) 777, 989
HpyCH4V TGCA 3 cut(s) 24, 444, 864
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 172, 324
HpyF3I CTNAG 1 cut(s) 571
HpySE526I ACGT 2 cut(s) 777, 989
Hsp92I GRCGYC 1 cut(s) 717
Hsp92II CATG 5 cut(s) 403, 655, 667, 731, 940
HspAI GCGC 3 cut(s) 325, 327, 358
Ksp22I TGATCA 2 cut(s) 414, 1018
Kzo9I GATC 7 cut(s) 136, 224, 414, 666, 766, 913, 1018
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 5 cut(s) 77, 178, 181, 184, 905
LweI GCATC 3 cut(s) 730, 873, 1037
MaeI CTAG 1 cut(s) 831
MaeII ACGT 2 cut(s) 777, 989
MaeIII GTNAC 4 cut(s) 76, 270, 343, 718
MalI GATC 7 cut(s) 138, 226, 416, 668, 768, 915, 1020
MboI GATC 7 cut(s) 136, 224, 414, 666, 766, 913, 1018
MboII GAAGA 8 cut(s) 473, 476, 511, 668, 890, 976, 1133, 1153
MfeI CAATTG 2 cut(s) 10, 19
MlyI GAGTC 1 cut(s) 481
MmeI TCCRAC 1 cut(s) 80
MseI TTAA 5 cut(s) 108, 207, 302, 600, 1035
MspA1I CMGCKG 2 cut(s) 134, 201
MspR9I CCNGG 2 cut(s) 353, 542
MunI CAATTG 2 cut(s) 10, 19
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 2 cut(s) 353, 542
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 140, 172, 324
NdeII GATC 7 cut(s) 136, 224, 414, 666, 766, 913, 1018
NlaIII CATG 5 cut(s) 403, 655, 667, 731, 940
NlaIV GGNNCC 2 cut(s) 539, 934
NmuCI GTSAC 3 cut(s) 270, 343, 718
NspI RCATGY 1 cut(s) 731
PauI GCGCGC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 551, 1062
PkrI GCNGC 5 cut(s) 92, 168, 171, 174, 895
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
Ppu21I YACGTR 1 cut(s) 990
PshBI ATTAAT 2 cut(s) 207, 1035
Psp6I CCWGG 2 cut(s) 351, 540
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 2 cut(s) 351, 540
PspN4I GGNNCC 2 cut(s) 539, 934
PstNI CAGNNNCTG 1 cut(s) 873
PteI GCGCGC 1 cut(s) 325
PvuII CAGCTG 2 cut(s) 134, 201
RsaI GTAC 2 cut(s) 365, 841
RsaNI GTAC 2 cut(s) 364, 840
SaqAI TTAA 5 cut(s) 108, 207, 302, 600, 1035
SatI GCNGC 5 cut(s) 91, 167, 170, 173, 894
Sau3AI GATC 7 cut(s) 136, 224, 414, 666, 766, 913, 1018
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 2 cut(s) 353, 542
SfaNI GCATC 3 cut(s) 730, 873, 1037
SmlI CTYRAG 2 cut(s) 707, 1066
SmoI CTYRAG 2 cut(s) 707, 1066
SnaBI TACGTA 1 cut(s) 990
SsiI CCGC 1 cut(s) 339
SspMI CTAG 1 cut(s) 831
StyD4I CCNGG 2 cut(s) 351, 540
TaaI ACNGT 3 cut(s) 254, 270, 276
TaiI ACGT 2 cut(s) 780, 992
TaqI TCGA 5 cut(s) 624, 916, 1005, 1081, 1128
TatI WGTACW 2 cut(s) 363, 839
TfiI GAWTC 2 cut(s) 551, 1062
Tru1I TTAA 5 cut(s) 108, 207, 302, 600, 1035
Tru9I TTAA 5 cut(s) 108, 207, 302, 600, 1035
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 3 cut(s) 270, 343, 718
TseI GCWGC 5 cut(s) 90, 166, 169, 172, 893
Tsp45I GTSAC 3 cut(s) 270, 343, 718
TspDTI ATGAA 4 cut(s) 416, 640, 941, 977
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 1 cut(s) 874
VspI ATTAAT 2 cut(s) 207, 1035
XapI RAATTY 2 cut(s) 1023, 1145
XceI RCATGY 1 cut(s) 731
XmiI GTMKAC 2 cut(s) 780, 1134
XspI CTAG 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.