Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002858.1

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Forward (+)

80302 .. 82172

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002858.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggacggagtgaatggtttggtttcagaacttgttgtagcagtgtatgagaaagctatgcttgatgaatgtgaagcattgctagctttagtagcagctatgcaggtcttgcatccacggtccatgacattggctagagaagatgatattcctatgagggttaaaaaaatttacaaccctaaagctccagacacttttgaagatttggggatatgggtggatgtcttgctactattgaagtcactattggccatggctccccagtctaacaacacagccaaagctaaagcaatagcactaaggatgaaggcactgcaaatgaaaagaggtaagaaaaacagtgttgaaaccagctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004072 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

119

Amino Acids

13.1

Weight (kDa)

8.58

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	200, 238, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	6 cut(s)	56, 86, 98, 185, 284, 354
AluI	AGCT	6 cut(s)	56, 86, 98, 185, 284, 354
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	120
AsuNHI	GCTAGC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	83, 135
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	121
BmtI	GCTAGC	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	116, 252
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	116, 252
BseGI	GGATG	3 cut(s)	112, 226, 309
BseMI	GCAATG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	251
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	116, 252
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	120, 341
BstAPI	GCANNNNNTGC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	299
BstDSI	CCRYGG	2 cut(s)	116, 252
BstF5I	GGATG	3 cut(s)	112, 226, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 92, 109
BstV1I	GCAGC	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	116, 252
BtsCI	GGATG	3 cut(s)	112, 226, 309
BtsI	GCAGTG	2 cut(s)	48, 311
BtsIMutI	CAGTG	3 cut(s)	48, 311, 346
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	120
CviAII	CATG	2 cut(s)	124, 253
DdeI	CTNAG	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	127, 256
FaiI	YATR	7 cut(s)	48, 59, 101, 125, 155, 214, 254
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FatI	CATG	2 cut(s)	123, 252
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	3 cut(s)	99, 233, 316
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	83, 135
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	127, 256
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	120, 341
HpyCH4V	TGCA	3 cut(s)	103, 112, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 92, 109
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	127, 256
LmnI	GCTCC	2 cut(s)	190, 262
LpnPI	CCDG	3 cut(s)	89, 201, 275
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	2 cut(s)	83, 135
MaeIII	GTNAC	1 cut(s)	240
MboII	GAAGA	2 cut(s)	152, 212
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	251
MnlI	CCTC	2 cut(s)	150, 320
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	83, 92, 109
NcoI	CCATGG	1 cut(s)	252
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	127, 256
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	120
SetI	ASST	8 cut(s)	58, 88, 100, 108, 187, 286, 331, 356
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	83, 135
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	120, 341
TasI	AATT	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	3 cut(s)	48, 318, 346
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	81, 320, 335
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	48, 318, 346
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	168
XspI	CTAG	2 cut(s)	83, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.