Rroxscaffold_6G00397130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004875
Physical Location & Seq
Reverse (-)
18802645 .. 18805735
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397130.1

Sequence Viewer

Length: 312 bp
ATGGTTGCGGCGAATAATCCGACAAGGAGCCGTGTGAGTCCCCAGTCTCGACCTCTCCCTCTCTTTGTGACCTCTGTCTTGATCACGCTTCGACCTCAGTCCCCAGTCTCGACCTCTCCCTCCTCATCGGTTAGCCAGTCGCCGTCTTTGGGCTCAGAAACTGGAGGTGATCCCATGGTGTCGGCTGGTGTTGATATTGTCCGCAGATCTGTGCAACCCCTTTCAAGGAACTACGGGATCACATCCTTTCGCTTTATCCATTGCTTGTTGAAAACTATAGGGTTTGTGGATATGAAGCAAGCTGATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.01

Weight (kDa)

10.77

Isoelectric Point (pI)

83.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 202
AclWI GGATC 3 cut(s) 164, 245, 299
AfiI CCNNNNNNNGG 2 cut(s) 149, 225
AgsI TTSAA 2 cut(s) 225, 271
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw26I GTCTC 2 cut(s) 51, 112
AlwI GGATC 3 cut(s) 164, 245, 299
AlwNI CAGNNNCTG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 179
BanII GRGCYC 1 cut(s) 155
BceAI ACGGC 2 cut(s) 15, 127
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 51, 112
BfmI CTRYAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 206
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 29
BmrI ACTGGG 2 cut(s) 37, 98
BmuI ACTGGG 2 cut(s) 37, 98
BoxI GACNNNNGTC 2 cut(s) 74, 97
BpmI CTGGAG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 225
Bse1I ACTGG 4 cut(s) 43, 104, 136, 166
Bse3DI GCAATG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 149, 225
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 110, 168
BseNI ACTGG 4 cut(s) 43, 104, 136, 166
BseRI GAGGAG 1 cut(s) 112
BslFI GGGAC 2 cut(s) 24, 85
BslI CCNNNNNNNGG 2 cut(s) 149, 225
BsmAI GTCTC 2 cut(s) 51, 112
BsmFI GGGAC 2 cut(s) 24, 85
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 5 cut(s) 81, 169, 206, 237, 304
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 2 cut(s) 8, 202
BspCNI CTCAG 2 cut(s) 109, 167
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 3 cut(s) 164, 245, 299
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 4 cut(s) 43, 104, 136, 166
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 5 cut(s) 81, 169, 206, 237, 304
BssT1I CCWWGG 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 96, 154
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 242
BstKTI GATC 5 cut(s) 84, 172, 209, 240, 307
BstMAI GTCTC 2 cut(s) 51, 112
BstMBI GATC 5 cut(s) 81, 169, 206, 237, 304
BstPAI GACNNNNGTC 2 cut(s) 74, 97
BstSFI CTRYAG 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 161
CviAII CATG 1 cut(s) 175
CviJI RGCY 5 cut(s) 30, 135, 153, 185, 302
CviKI_1 RGCY 5 cut(s) 30, 135, 153, 185, 302
DdeI CTNAG 2 cut(s) 96, 154
DpnI GATC 5 cut(s) 83, 171, 208, 239, 306
DpnII GATC 5 cut(s) 81, 169, 206, 237, 304
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 178
FaiI YATR 3 cut(s) 176, 278, 293
FaqI GGGAC 2 cut(s) 24, 85
FatI CATG 1 cut(s) 174
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 183
Hin1II CATG 1 cut(s) 178
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 21, 157
Hpy188III TCNNGA 3 cut(s) 48, 79, 109
HpyCH4V TGCA 1 cut(s) 214
HpyF3I CTNAG 2 cut(s) 96, 154
Hsp92II CATG 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 5 cut(s) 81, 169, 206, 237, 304
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 5 cut(s) 56, 117, 147, 149, 171
MaeIII GTNAC 1 cut(s) 67
MalI GATC 5 cut(s) 83, 171, 208, 239, 306
MboI GATC 5 cut(s) 81, 169, 206, 237, 304
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 155
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 8 cut(s) 63, 69, 82, 105, 124, 130, 133, 158
MseI TTAA 1 cut(s) 310
NcoI CCATGG 1 cut(s) 174
NdeII GATC 5 cut(s) 81, 169, 206, 237, 304
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PshAI GACNNNNGTC 2 cut(s) 74, 97
PspN4I GGNNCC 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 206
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 5 cut(s) 81, 169, 206, 237, 304
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 155
SetI ASST 6 cut(s) 55, 74, 97, 116, 169, 304
SfcI CTRYAG 1 cut(s) 276
SsiI CCGC 2 cut(s) 8, 202
StyI CCWWGG 1 cut(s) 174
TaqI TCGA 3 cut(s) 49, 91, 110
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.