Rh1BG184200

chromosome transmission fidelity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004875
Physical Location & Seq
Forward (+)
29417853 .. 29419064
1212 bp
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UTR
Exon/CDS
Intron
Rh1BG184200.1

Sequence Viewer

Length: 372 bp
ATGTGCTGCTCAAGGCCAAGGATGAGAAGGCCCTCCTCGTCGGTGCGAAGCCAGTCGCCGTCTTTGGGCTCAGTATGGCTGAGCTTTGATTGCATCAGTATGACTTGGTTTTCAATATGTCCTTGTGATTTCATTTCGGTGACGGCGCTGGGTTTGGGCGACAGGGTTTATGCCAAGATTTCTAGGGTGGAGATGGAGGAGCGTCCACAGAGATTGGATGGAATAGGACAATCCCAATCTGGAGGTCTCATTTTGGAACCTATTGATGTTCTACTGCAAAGACGGGAGCAAAAGGCATTTACAAGGGTATGGTTCGTTCTGCAACCATTATTTCCTGCGGTTGCTAGCAATGATTGGAAGGGGCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

123

Amino Acids

13.88

Weight (kDa)

9.04

Isoelectric Point (pI)

73.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 114
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 251
AoxI GGCC 3 cut(s) 14, 29, 362
ApeKI GCWGC 1 cut(s) 6
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 30, 362
AsuHPI GGTGA 1 cut(s) 151
AsuNHI GCTAGC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 71
BccI CCATC 2 cut(s) 187, 212
BceAI ACGGC 2 cut(s) 43, 159
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 2 cut(s) 183, 345
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 1 cut(s) 7
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 30, 362
BmiI GGNNCC 2 cut(s) 258, 363
BmsI GCATC 1 cut(s) 102
BmtI GCTAGC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 27, 223
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 71, 84
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 25, 212
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 3 cut(s) 16, 31, 364
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 3 cut(s) 16, 31, 364
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 71
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 1 cut(s) 338
BspANI GGCC 3 cut(s) 16, 31, 364
BspCNI CTCAG 2 cut(s) 72, 83
BspLI GGNNCC 2 cut(s) 258, 363
BspOI GCTAGC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 70, 80
BstF5I GGATG 2 cut(s) 27, 223
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 251
BstMWI GCNNNNNNNGC 1 cut(s) 90
BsuRI GGCC 3 cut(s) 16, 31, 364
BtsCI GGATG 2 cut(s) 27, 223
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 30, 362
CseI GACGC 1 cut(s) 191
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviJI RGCY 7 cut(s) 16, 31, 51, 69, 79, 84, 364
CviKI_1 RGCY 7 cut(s) 16, 31, 51, 69, 79, 84, 364
DdeI CTNAG 2 cut(s) 70, 80
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 17
FaiI YATR 6 cut(s) 76, 101, 118, 171, 310, 370
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 2 cut(s) 34, 230
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 2 cut(s) 183, 345
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 3 cut(s) 16, 31, 364
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 148
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 240
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 21, 352
HpyCH4V TGCA 3 cut(s) 93, 277, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 70, 80
HspAI GCGC 1 cut(s) 146
LmnI GCTCC 2 cut(s) 199, 286
LpnPI CCDG 5 cut(s) 65, 134, 148, 225, 348
LweI GCATC 1 cut(s) 102
MaeI CTAG 2 cut(s) 183, 345
MaeIII GTNAC 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 71
MnlI CCTC 4 cut(s) 43, 46, 190, 236
MslI CAYNNNNRTG 2 cut(s) 98, 137
MwoI GCNNNNNNNGC 1 cut(s) 90
NheI GCTAGC 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 258, 363
NmuCI GTSAC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 258, 363
PspPI GGNCC 2 cut(s) 30, 362
PsrI GAACNNNNNNTAC 2 cut(s) 300, 332
RseI CAYNNNNRTG 2 cut(s) 98, 137
SatI GCNGC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 30, 362
SduI GDGCHC 1 cut(s) 71
SetI ASST 3 cut(s) 86, 247, 262
SfaNI GCATC 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 98, 137
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SsiI CCGC 1 cut(s) 338
SspMI CTAG 2 cut(s) 183, 345
StyI CCWWGG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 121
XspI CTAG 2 cut(s) 183, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.