Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Reverse (-)

85041035 .. 85047943

Gene Structure 6909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG537400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGATACAACTCATTCAAGTCACCAAACCGATCATCCAGCTATTGACGTTTATGGTCCTTTGGTAATTTGGGATGAATATGAAGTTGAAACCGGTAATGGAAGAACTATTAAAAGGAAATCAAGAAGCACAGTCATGTTTGAGGATCCAAGAAAACATAAGAGGACAAGTACACCAAAAGTCAAAAGCCCCAGGAGTGCAGTCCAGGTGAGAATTGATCACATGGCTGTTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATGCAATGTCTTCCTCAACATCAACAGGTTTTGGAAGAATTGCTGAACAAAGAATTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.59

Weight (kDa)

8.79

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	140, 153
AfaI	GTAC	1 cut(s)	172
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	18, 89, 250
AjnI	CCWGG	2 cut(s)	191, 204
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AlwI	GGATC	2 cut(s)	140, 153
AsiGI	ACCGGT	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	14, 220, 246
AvaII	GGWCC	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	193, 206
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	193, 206
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	193, 206
BpiI	GAAGAC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	193, 206
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	34, 79
BseMI	GCAATG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	219
BshTI	ACCGGT	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	31, 145, 217
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	140, 153
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	31, 145, 217
Bst2UI	CCWGG	2 cut(s)	193, 206
Bst4CI	ACNGT	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	34, 79
BstKTI	GATC	3 cut(s)	34, 148, 220
BstMBI	GATC	3 cut(s)	31, 145, 217
BstNI	CCWGG	2 cut(s)	193, 206
BstSCI	CCNGG	2 cut(s)	191, 204
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	34, 79
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	171
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	3 cut(s)	136, 223, 271
CviJI	RGCY	3 cut(s)	41, 189, 227
CviKI_1	RGCY	3 cut(s)	41, 189, 227
CviQI	GTAC	1 cut(s)	171
DpnI	GATC	3 cut(s)	33, 147, 219
DpnII	GATC	3 cut(s)	31, 145, 217
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	191, 204
FaeI	CATG	3 cut(s)	139, 226, 274
FaiI	YATR	6 cut(s)	54, 81, 137, 159, 224, 272
FatI	CATG	3 cut(s)	135, 222, 270
FbaI	TGATCA	1 cut(s)	217
FokI	GGATG	2 cut(s)	21, 86
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	3 cut(s)	139, 226, 274
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	14, 220, 246
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	123
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	200, 274
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	139, 226, 274
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	31, 145, 217
LpnPI	CCDG	8 cut(s)	51, 106, 178, 191, 205, 218, 270, 281
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	20, 252
MalI	GATC	3 cut(s)	33, 147, 219
MboI	GATC	3 cut(s)	31, 145, 217
MboII	GAAGA	3 cut(s)	114, 272, 317
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	4 cut(s)	66, 213, 308, 323
MnlI	CCTC	3 cut(s)	136, 156, 294
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	193, 206
MvaI	CCWGG	2 cut(s)	193, 206
NdeII	GATC	3 cut(s)	31, 145, 217
NlaIII	CATG	3 cut(s)	139, 226, 274
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	20, 252
PinAI	ACCGGT	1 cut(s)	92
Psp6I	CCWGG	2 cut(s)	191, 204
PspGI	CCWGG	2 cut(s)	191, 204
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	3 cut(s)	31, 145, 217
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	193, 206
SetI	ASST	5 cut(s)	43, 51, 210, 300, 331
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	66, 213, 308, 323
StyD4I	CCNGG	2 cut(s)	191, 204
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	51
TasI	AATT	4 cut(s)	66, 213, 308, 323
TatI	WGTACW	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	20, 252
Tsp45I	GTSAC	2 cut(s)	20, 252
TspDTI	ATGAA	2 cut(s)	90, 96
VpaK11BI	GGWCC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.