Rh5CG356800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004875
Physical Location & Seq
Reverse (-)
41998281 .. 42009723
11443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG356800.1

Sequence Viewer

Length: 408 bp
ATGACTAATTTGAATGATGCATCATTCTTAAAGGAGCTCAGTGGAAGAATCGGAGCAAGCCACAATGGAAGTCGCGAATCCTATTCCAATTCCATTGAATTCGTTGTGCTTCTGGATACTTGTGTGTTACATTTGGAGGTTTTTCATGAAATGCAACATTTGAGATTAGCGATTCAACTTGAAAAACAAAGAAAAAAAATCTCTAACGATTGGTTTGGCTCTAGAGGAAGTGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATAAGAGAACCTACTACAAGTTTCGCTCTGAGTATGATGTGGCAGCAGAAGAGTGTATTGGCCTTACCTATCATGTACCACGGATGCGTGGTTACTCCTATGCACGTAGACACTATCAATGTACGGCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.69

Weight (kDa)

8.79

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 382
AccII CGCG 1 cut(s) 75
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 2 cut(s) 351, 397
AgsI TTSAA 4 cut(s) 13, 98, 176, 182
AjnI CCWGG 1 cut(s) 258
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 39
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 98
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 260
BciVI GTATCC 1 cut(s) 109
BfaI CTAG 2 cut(s) 222, 402
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 3 cut(s) 7, 29, 348
BpmI CTGGAG 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 52, 294
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 39
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 39
Bsp68I TCGCGA 1 cut(s) 75
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 51, 295
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 145
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 38, 303
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 75
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 329
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 46, 234
BtuMI TCGCGA 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 1 cut(s) 145
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 2 cut(s) 350, 396
CviAII CATG 2 cut(s) 146, 347
CviJI RGCY 5 cut(s) 37, 60, 219, 336, 401
CviKI_1 RGCY 5 cut(s) 37, 60, 219, 336, 401
CviQI GTAC 2 cut(s) 350, 396
DdeI CTNAG 2 cut(s) 38, 303
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 2 cut(s) 149, 350
FaiI YATR 4 cut(s) 147, 309, 348, 375
FatI CATG 2 cut(s) 145, 346
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 222, 402
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 2 cut(s) 149, 350
HinfI GANTC 4 cut(s) 48, 77, 172, 240
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 53, 304
Hpy188III TCNNGA 5 cut(s) 74, 113, 146, 222, 250
Hpy8I GTNNAC 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 20, 154, 377
HpyF3I CTNAG 2 cut(s) 38, 303
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 2 cut(s) 149, 350
LmnI GCTCC 2 cut(s) 34, 53
LpnPI CCDG 5 cut(s) 98, 222, 245, 263, 272
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 3 cut(s) 7, 29, 348
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 2 cut(s) 222, 402
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 4 cut(s) 126, 230, 241, 365
MboII GAAGA 2 cut(s) 57, 335
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 3 cut(s) 7, 88, 98
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 2 cut(s) 130, 218
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 75
NlaIII CATG 2 cut(s) 149, 350
NmuCI GTSAC 2 cut(s) 230, 241
NruI TCGCGA 1 cut(s) 75
NsiI ATGCAT 1 cut(s) 22
PagI TCATGA 1 cut(s) 145
PfeI GAWTC 3 cut(s) 48, 77, 172
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
RruI TCGCGA 1 cut(s) 75
RsaI GTAC 2 cut(s) 351, 397
RsaNI GTAC 2 cut(s) 350, 396
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 318
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 39
SetI ASST 8 cut(s) 39, 141, 257, 264, 287, 344, 382, 407
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 3 cut(s) 7, 29, 348
Sse9I AATT 3 cut(s) 7, 88, 98
SspMI CTAG 2 cut(s) 222, 402
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 258
TaiI ACGT 1 cut(s) 382
TasI AATT 3 cut(s) 7, 88, 98
TfiI GAWTC 3 cut(s) 48, 77, 172
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 46, 241
TseFI GTSAC 2 cut(s) 230, 241
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 230, 241
TspDTI ATGAA 2 cut(s) 134, 162
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 2 cut(s) 46, 241
XapI RAATTY 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 382
XspI CTAG 2 cut(s) 222, 402
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.