Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Forward (+)

41581955 .. 41584022

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG213900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGCTGCTCAAGGCCAAGGATGAGAAGGCCCTCCTCGTCGGTGCGAAGCCAGTCGCCGTCTTTGGGCTCAGTATGGCTGAGCTTTGATTGCATCAGTATGACTTGGTTTTCAATATGTCCTTGTGATTTCATTTCGGTGACGGCGCTGGGTTTGGGCGACAGGGTTTATGCCAAGATTTCTAGGGTGGAGATGGAGGAGCGTCCACAGAGATTGGATGGAATAGGACAATCCCAATCTGGAGGTTCGTTCTGCAACCATTATTTCCTGCGGTTGCTAGCAATGATTGGAAGGGGCCAATATGATGCTGCCTATGATATAGGTCAGTTAACTATATTTTTTCAGAAACATATATTTACCCTGAAGACTGCATTTTGTACTTCAGGTGATACAAAATTTTGGATTGAGATCTTGTGGGTCAGTCTCAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA_3

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

8.96

Isoelectric Point (pI)

67.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	2 cut(s)	366, 383
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	114
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	428
AoxI	GGCC	3 cut(s)	14, 29, 295
ApeKI	GCWGC	2 cut(s)	6, 308
ApoI	RAATTY	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	30, 295
AsuHPI	GGTGA	2 cut(s)	151, 398
AsuNHI	GCTAGC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	187, 212
BceAI	ACGGC	2 cut(s)	43, 159
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	183, 278
BfoI	RGCGCY	1 cut(s)	149
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	2 cut(s)	7, 309
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	2 cut(s)	8, 310
BmgT120I	GGNCC	2 cut(s)	30, 295
BmiI	GGNNCC	1 cut(s)	296
BmsI	GCATC	2 cut(s)	102, 295
BmtI	GCTAGC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	27, 223
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	71, 84
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	2 cut(s)	25, 212
BseXI	GCAGC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	148
BshFI	GGCC	3 cut(s)	16, 31, 297
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	16, 31, 297
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	408
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	3 cut(s)	16, 31, 297
BspCNI	CTCAG	2 cut(s)	72, 83
BspLI	GGNNCC	1 cut(s)	296
BspOI	GCTAGC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	70, 80, 425
BstF5I	GGATG	2 cut(s)	27, 223
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	16, 31, 297
BtsCI	GGATG	2 cut(s)	27, 223
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	30, 295
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	378
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviJI	RGCY	7 cut(s)	16, 31, 51, 69, 79, 84, 297
CviKI_1	RGCY	7 cut(s)	16, 31, 51, 69, 79, 84, 297
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	3 cut(s)	70, 80, 425
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	366, 383
EcoO109I	RGGNCCY	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	7, 309
FokI	GGATG	2 cut(s)	34, 230
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	7, 309
FspBI	CTAG	2 cut(s)	183, 278
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	2 cut(s)	7, 309
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	16, 31, 297
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HpaI	GTTAAC	1 cut(s)	330
HphI	GGTGA	2 cut(s)	151, 398
Hpy166II	GTNNAC	2 cut(s)	206, 330
Hpy188I	TCNGA	2 cut(s)	345, 428
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	2 cut(s)	206, 330
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	21, 285
HpyCH4V	TGCA	3 cut(s)	93, 255, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	3 cut(s)	70, 80, 425
HspAI	GCGC	1 cut(s)	146
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	7 cut(s)	65, 134, 148, 225, 281, 369, 374
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	102, 295
MaeI	CTAG	2 cut(s)	183, 278
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	1 cut(s)	376
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	1 cut(s)	395
MnlI	CCTC	4 cut(s)	43, 46, 190, 236
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	2 cut(s)	98, 137
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeII	GATC	1 cut(s)	408
NheI	GCTAGC	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	8, 310
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	2 cut(s)	30, 295
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	2 cut(s)	98, 137
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	7, 309
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	30, 295
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	4 cut(s)	86, 247, 325, 388
SfaNI	GCATC	2 cut(s)	102, 295
SmiMI	CAYNNNNRTG	2 cut(s)	98, 137
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	2 cut(s)	183, 278
StyI	CCWWGG	1 cut(s)	17
TasI	AATT	1 cut(s)	395
TatI	WGTACW	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	6, 308
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	121
XapI	RAATTY	1 cut(s)	395
XspI	CTAG	2 cut(s)	183, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.