Rorug02G0429700

chromosome transmission fidelity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004875
Physical Location & Seq
Reverse (-)
55075184 .. 55081970
6787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0429700.1

Sequence Viewer

Length: 1203 bp
ATGTGCCTCCTCCGAGGCACCGTCGTTCTCCAGGTCCTCTACGGTCACATCCACTTCCCCAACTCCAACGACATCGTTTTCGTTAAAGATGTAGTCTTGCAACCGAGGCCATTGCTTTCCACAAAGAAGCTGCTTGTTTCCATTGCAGCTGGAGTCAAACTGAAAGATCTCCAGGATTGGGCCGGTCACAGCCGATTTATCAGGGTAATGCCCAATACTTCTTCTGCTGTTGGTGTTGCAGCGTCAGAGGAGACCGTGATAAATGAAAAGATGTGGTATGTGATATCTCAAAATGAGCCATCACTTCTTCCAATATCCTTGAAGATCCATGGGGTTCCATTGGGAGAGGACAATGTGCGCGTCTCAGTCATTGGAACCATTGTGCATGATGCCTTGCTACCGTTTCCAGTGAAGGATGCTGACATAGTCACTGTCGGAGACGCCATTGGGACTTGTGTTGCTTGGCCAAGAAAGCTGGTTGTTACCCCTGCACCAGAGGCACCCCATAAACCCATTGAGCAGAAAAAAACAAAGCGTGCTAATCCAAAGAAGAGAATCAGAGATTCATTTGATGATGACAATGAAGACCTGGAAAACTTGCCGACGAATCTGCCATTACCAGTAAAGGACTTGTGTATATGGGACAAGACTGAATTGATGGATGGCGCCACAATCCACACAACATTTGGTGGGGAAATTTTCGGCCATTCTAGGAAAGCCGTAATCTTTAGAAGGGATATCTATATCATGGCTAACATGCCTGAAGTATCTGGAGGAGTCATTGTTTTTTACATGAGCGACCTTTATGGAGTCCTAAAGAAGTCTAAGATGCTTGATATGGTTGGCTTTATCGACCCTGCACACACCGGTATAATTGGGTGTGGAAATCCCATTGAACGGGCATGGTCTATGTCAAATCGGTACATGTTAGGGAAATCGGGGCAGATATTTTTGGTTCCATATAACTCAGGTACTCATTGGATGTTGTCGGTGGTGAACCCGGATGAAGAAGTCGTGCATTTCATGGATCCGCTAAAAAGGCGACTTTGTGCTGGTGAATGGAAAAGTATTGTTGACAAGAAAGGAAGGAAAATAATCCAATGGAAGAATCTTGCTGGTATTCCAGAGCAAACTGATTCTAAGACTTGTGGTTACTTCGTCATGCGTTATATGAAAGAAATTGTAGAGGACAAGAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

400

Amino Acids

44.77

Weight (kDa)

8.57

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 107 - 162 6.4e-10 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 17, 499, 665
AccII CGCG 1 cut(s) 360
AciI CCGC 1 cut(s) 1031
AclWI GGATC 3 cut(s) 319, 1022, 1035
AcoI YGGCCR 2 cut(s) 464, 703
AcsI RAATTY 1 cut(s) 696
AcuI CTGAAG 1 cut(s) 783
AcyI GRCGYC 2 cut(s) 441, 666
AfaI GTAC 2 cut(s) 923, 973
AfiI CCNNNNNNNGG 2 cut(s) 178, 897
AflIII ACRYGT 1 cut(s) 924
AgeI ACCGGT 1 cut(s) 866
AgsI TTSAA 2 cut(s) 322, 896
AjnI CCWGG 3 cut(s) 30, 171, 588
AluBI AGCT 3 cut(s) 130, 149, 475
AluI AGCT 3 cut(s) 130, 149, 475
Alw26I GTCTC 3 cut(s) 245, 367, 432
AlwI GGATC 3 cut(s) 319, 1022, 1035
AoxI GGCC 4 cut(s) 107, 180, 464, 703
ApeKI GCWGC 3 cut(s) 130, 146, 239
ApoI RAATTY 1 cut(s) 696
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AsiGI ACCGGT 1 cut(s) 866
AspLEI GCGC 2 cut(s) 360, 668
AspS9I GGNCC 2 cut(s) 34, 180
AsuC2I CCSGG 1 cut(s) 1001
AsuHPI GGTGA 2 cut(s) 1006, 1067
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 466
BamHI GGATCC 1 cut(s) 1027
BanI GGYRCC 3 cut(s) 17, 499, 665
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 3 cut(s) 117, 158, 251
BccI CCATC 3 cut(s) 307, 652, 656
BceAI ACGGC 1 cut(s) 704
BcgI CGANNNNNNTGC 4 cut(s) 94, 128, 592, 626
BciT130I CCWGG 3 cut(s) 32, 173, 590
BcnI CCSGG 1 cut(s) 1001
BcoDI GTCTC 3 cut(s) 245, 367, 432
BfaI CTAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 669
BglII AGATCT 1 cut(s) 166
BisI GCNGC 3 cut(s) 131, 147, 240
BlsI GCNGC 3 cut(s) 132, 148, 241
Bme1390I CCNGG 4 cut(s) 32, 173, 590, 1001
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 180
BmiI GGNNCC 7 cut(s) 19, 336, 376, 501, 667, 957, 1029
BmrFI CCNGG 4 cut(s) 32, 173, 590, 1001
BmsI GCATC 3 cut(s) 379, 406, 819
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 4 cut(s) 14, 155, 171, 792
BpuMI CCSGG 1 cut(s) 1001
BsaHI GRCGYC 2 cut(s) 441, 666
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 13, 104, 328
BsaWI WCCGGW 1 cut(s) 866
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 897
Bse118I RCCGGY 2 cut(s) 182, 866
Bse1I ACTGG 2 cut(s) 407, 620
Bse3DI GCAATG 2 cut(s) 110, 141
BseBI CCWGG 3 cut(s) 32, 173, 590
BseDI CCNNGG 3 cut(s) 13, 104, 328
BseGI GGATG 5 cut(s) 48, 421, 667, 987, 1009
BseLI CCNNNNNNNGG 2 cut(s) 178, 897
BseMI GCAATG 2 cut(s) 110, 141
BseMII CTCAG 2 cut(s) 378, 981
BseNI ACTGG 2 cut(s) 407, 620
BseRI GAGGAG 2 cut(s) 263, 789
BseXI GCAGC 3 cut(s) 117, 158, 251
BsgI GTGCAG 2 cut(s) 474, 843
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 4 cut(s) 109, 182, 466, 705
BshNI GGYRCC 3 cut(s) 17, 499, 665
BshTI ACCGGT 1 cut(s) 866
BsiSI CCGG 3 cut(s) 183, 867, 1001
BslFI GGGAC 2 cut(s) 463, 656
BslI CCNNNNNNNGG 2 cut(s) 178, 897
BsmAI GTCTC 3 cut(s) 245, 367, 432
BsmBI CGTCTC 2 cut(s) 367, 432
BsmFI GGGAC 2 cut(s) 463, 656
BsnI GGCC 4 cut(s) 109, 182, 466, 705
Bso31I GGTCTC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 166, 324, 1027
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 1 cut(s) 1031
BspANI GGCC 4 cut(s) 109, 182, 466, 705
BspCNI CTCAG 2 cut(s) 377, 980
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 7 cut(s) 19, 336, 376, 501, 667, 957, 1029
BspPI GGATC 3 cut(s) 319, 1022, 1035
BspT107I GGYRCC 3 cut(s) 17, 499, 665
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 110, 141
BsrFI RCCGGY 2 cut(s) 182, 866
BsrI ACTGG 2 cut(s) 407, 620
BssAI RCCGGY 2 cut(s) 182, 866
BssECI CCNNGG 3 cut(s) 13, 104, 328
BssMI GATC 3 cut(s) 166, 324, 1027
BssNI GRCGYC 2 cut(s) 441, 666
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 3 cut(s) 32, 173, 590
Bst4CI ACNGT 5 cut(s) 22, 44, 256, 402, 433
Bst6I CTCTTC 1 cut(s) 545
BstACI GRCGYC 2 cut(s) 441, 666
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 4 cut(s) 364, 825, 967, 1140
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 5 cut(s) 48, 421, 667, 987, 1009
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 2 cut(s) 360, 668
BstKTI GATC 3 cut(s) 169, 327, 1030
BstMAI GTCTC 3 cut(s) 245, 367, 432
BstMBI GATC 3 cut(s) 166, 324, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 106, 472, 497, 1039
BstNI CCWGG 3 cut(s) 32, 173, 590
BstNSI RCATGY 2 cut(s) 760, 928
BstSCI CCNGG 4 cut(s) 30, 171, 588, 999
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 3 cut(s) 117, 158, 251
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 3 cut(s) 166, 324, 1027
BstYI RGATCY 3 cut(s) 166, 324, 1027
BsuRI GGCC 4 cut(s) 109, 182, 466, 705
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 5 cut(s) 48, 421, 667, 987, 1009
BtsIMutI CAGTG 2 cut(s) 414, 429
Cac8I GCNNGC 1 cut(s) 537
CfoI GCGC 2 cut(s) 360, 668
Cfr10I RCCGGY 2 cut(s) 182, 866
Cfr13I GGNCC 2 cut(s) 34, 180
CseI GACGC 3 cut(s) 231, 349, 449
Csp6I GTAC 2 cut(s) 922, 972
CspAI ACCGGT 1 cut(s) 866
CviAII CATG 9 cut(s) 329, 386, 748, 757, 793, 903, 925, 1024, 1162
CviQI GTAC 2 cut(s) 922, 972
DdeI CTNAG 4 cut(s) 364, 825, 967, 1140
DinI GGCGCC 1 cut(s) 667
DpnI GATC 3 cut(s) 168, 326, 1029
DpnII GATC 3 cut(s) 166, 324, 1027
EaeI YGGCCR 2 cut(s) 464, 703
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 245
Eco32I GATATC 2 cut(s) 285, 739
Eco47I GGWCC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 3 cut(s) 30, 171, 588
EcoRV GATATC 2 cut(s) 285, 739
EcoT14I CCWWGG 1 cut(s) 328
EgeI GGCGCC 1 cut(s) 667
EheI GGCGCC 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 328
Esp3I CGTCTC 2 cut(s) 367, 432
FaeI CATG 9 cut(s) 332, 389, 751, 760, 796, 906, 928, 1027, 1165
FaqI GGGAC 2 cut(s) 463, 656
FatI CATG 9 cut(s) 328, 385, 747, 756, 792, 902, 924, 1023, 1161
Fnu4HI GCNGC 3 cut(s) 131, 147, 240
FokI GGATG 5 cut(s) 35, 428, 674, 994, 1016
Fsp4HI GCNGC 3 cut(s) 131, 147, 240
FspBI CTAG 1 cut(s) 711
GlaI GCGC 2 cut(s) 359, 667
GluI GCNGC 3 cut(s) 131, 147, 240
GsuI CTGGAG 4 cut(s) 14, 155, 171, 792
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 4 cut(s) 109, 182, 466, 705
HapII CCGG 3 cut(s) 183, 867, 1001
HgaI GACGC 3 cut(s) 231, 349, 449
HhaI GCGC 2 cut(s) 360, 668
Hin1I GRCGYC 2 cut(s) 441, 666
Hin1II CATG 9 cut(s) 332, 389, 751, 760, 796, 906, 928, 1027, 1165
Hin6I GCGC 2 cut(s) 358, 666
HinP1I GCGC 2 cut(s) 358, 666
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HinfI GANTC 8 cut(s) 153, 555, 563, 607, 777, 810, 1108, 1136
HpaII CCGG 3 cut(s) 183, 867, 1001
HphI GGTGA 2 cut(s) 1006, 1067
Hpy166II GTNNAC 2 cut(s) 997, 1075
Hpy188I TCNGA 4 cut(s) 14, 247, 437, 560
Hpy188III TCNNGA 2 cut(s) 771, 1124
Hpy8I GTNNAC 2 cut(s) 997, 1075
Hpy99I CGWCG 2 cut(s) 26, 607
HpyAV CCTTC 3 cut(s) 406, 726, 1080
HpyCH4III ACNGT 5 cut(s) 22, 44, 256, 402, 433
HpyCH4V TGCA 7 cut(s) 100, 146, 239, 385, 491, 860, 1018
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 472, 497, 1039
HpyF3I CTNAG 4 cut(s) 364, 825, 967, 1140
Hsp92I GRCGYC 2 cut(s) 441, 666
Hsp92II CATG 9 cut(s) 332, 389, 751, 760, 796, 906, 928, 1027, 1165
HspAI GCGC 2 cut(s) 358, 666
KasI GGCGCC 1 cut(s) 665
Kzo9I GATC 3 cut(s) 166, 324, 1027
Lsp1109I GCAGC 3 cut(s) 117, 158, 251
LweI GCATC 3 cut(s) 379, 406, 819
MaeI CTAG 1 cut(s) 711
MaeIII GTNAC 5 cut(s) 44, 185, 427, 481, 1151
MalI GATC 3 cut(s) 168, 326, 1029
MboI GATC 3 cut(s) 166, 324, 1027
MboII GAAGA 7 cut(s) 213, 299, 334, 562, 596, 1019, 1117
MflI RGATCY 3 cut(s) 166, 324, 1027
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 4 cut(s) 653, 696, 873, 1179
MluNI TGGCCA 1 cut(s) 466
Mly113I GGCGCC 1 cut(s) 666
MlyI GAGTC 3 cut(s) 162, 786, 819
MmeI TCCRAC 2 cut(s) 90, 415
Mox20I TGGCCA 1 cut(s) 466
MscI TGGCCA 1 cut(s) 466
MseI TTAA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 466
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 3 cut(s) 183, 867, 1001
MspR9I CCNGG 4 cut(s) 32, 173, 590, 1001
MvaI CCWGG 3 cut(s) 32, 173, 590
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 4 cut(s) 106, 472, 497, 1039
NarI GGCGCC 1 cut(s) 666
NciI CCSGG 1 cut(s) 1001
NcoI CCATGG 1 cut(s) 328
NdeII GATC 3 cut(s) 166, 324, 1027
NlaIII CATG 9 cut(s) 332, 389, 751, 760, 796, 906, 928, 1027, 1165
NlaIV GGNNCC 7 cut(s) 19, 336, 376, 501, 667, 957, 1029
NmuCI GTSAC 3 cut(s) 44, 185, 427
NspI RCATGY 2 cut(s) 760, 928
PciI ACATGT 1 cut(s) 924
PfeI GAWTC 5 cut(s) 555, 563, 607, 1108, 1136
PflFI GACNNNGTC 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 171
PinAI ACCGGT 1 cut(s) 866
PkrI GCNGC 3 cut(s) 132, 148, 241
PleI GAGTC 3 cut(s) 161, 785, 818
PluTI GGCGCC 1 cut(s) 669
PpsI GAGTC 3 cut(s) 161, 785, 818
PpuMI RGGWCCY 1 cut(s) 34
PscI ACATGT 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 3 cut(s) 30, 171, 588
PspGI CCWGG 3 cut(s) 30, 171, 588
PspN4I GGNNCC 7 cut(s) 19, 336, 376, 501, 667, 957, 1029
PspPI GGNCC 2 cut(s) 34, 180
PspPPI RGGWCCY 1 cut(s) 34
PsuI RGATCY 3 cut(s) 166, 324, 1027
PsyI GACNNNGTC 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 923, 973
RsaNI GTAC 2 cut(s) 922, 972
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 131, 147, 240
Sau3AI GATC 3 cut(s) 166, 324, 1027
Sau96I GGNCC 2 cut(s) 34, 180
SchI GAGTC 3 cut(s) 162, 786, 819
ScrFI CCNGG 4 cut(s) 32, 173, 590, 1001
SetI ASST 7 cut(s) 36, 132, 151, 477, 591, 804, 973
SfaNI GCATC 3 cut(s) 379, 406, 819
SfoI GGCGCC 1 cut(s) 667
SinI GGWCC 1 cut(s) 34
Sse9I AATT 4 cut(s) 653, 696, 873, 1179
SsiI CCGC 1 cut(s) 1031
SspDI GGCGCC 1 cut(s) 665
SspMI CTAG 1 cut(s) 711
StyD4I CCNGG 4 cut(s) 30, 171, 588, 999
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 5 cut(s) 22, 44, 256, 402, 433
TaqI TCGA 1 cut(s) 852
TasI AATT 4 cut(s) 653, 696, 873, 1179
TfiI GAWTC 5 cut(s) 555, 563, 607, 1108, 1136
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 414, 436
TseFI GTSAC 3 cut(s) 44, 185, 427
TseI GCWGC 3 cut(s) 130, 146, 239
Tsp45I GTSAC 3 cut(s) 44, 185, 427
TspDTI ATGAA 6 cut(s) 279, 555, 597, 1012, 1020, 1187
TspRI CASTG 2 cut(s) 414, 436
Tth111I GACNNNGTC 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 696
XceI RCATGY 2 cut(s) 760, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.