Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Reverse (-)

78732385 .. 78754364

Gene Structure 21980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG561500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCCAGTATTGGTTCTACCGCAACATTCATATTTCATCTCATCTTATCTTGGAGTTTCCTTTGTGGACGATACAAGTTTTCGAAGGTAATTTGGGATGAATATGAAGTTGAAACCGGTAATGGAAGAACTATTAAAAGGAAATCAAGAAGCACAGTCATGTTTGAGGATCCAAGAAAACATAAGAGGACAAGTACACCAAAAGTCAAAAGCCCCAGGAGTGCAGTCCAGGTGAGAATTGATCACATGGCTGTTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATGCAATGTCTTCCTCAACATCAACAGAAGGACTCTAACGTCTCCGGCGACGATGCCTTCGCTCGCCTCTACTCCGCCGTTGAGTCCGACATTGAAGCTGCTCCTCAGAAAGCGGAGCTTACTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGATCTGAATGCCGAGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGTTCCCAAGTTGTAGAGATTGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

173

Amino Acids

19.72

Weight (kDa)

9.71

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	274, 332
AciI	CCGC	3 cut(s)	21, 369, 407
AclWI	GGATC	2 cut(s)	164, 177
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	113, 274, 389, 420
AjnI	CCWGG	2 cut(s)	215, 228
AluBI	AGCT	2 cut(s)	392, 412
AluI	AGCT	2 cut(s)	392, 412
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	164, 177
ApeKI	GCWGC	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AsiGI	ACCGGT	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	244, 270
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	2 cut(s)	217, 230
BciVI	GTATCC	1 cut(s)	283
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	217, 230
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	217, 230
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	296
Bpu14I	TTCGAA	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	215, 474
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	6, 281
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	217, 230
BseDI	CCNNGG	2 cut(s)	215, 474
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	6, 281
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	243
BshTI	ACCGGT	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	117, 339, 469
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	340
BsmBI	CGTCTC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	460
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	169, 241, 448
BspACI	CCGC	3 cut(s)	21, 369, 407
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	164, 177
BspT104I	TTCGAA	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	6, 281
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	215, 474
BssMI	GATC	3 cut(s)	169, 241, 448
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	217, 230
Bst4CI	ACNGT	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	3 cut(s)	172, 244, 451
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	3 cut(s)	169, 241, 448
BstNI	CCWGG	2 cut(s)	217, 230
BstSCI	CCNGG	2 cut(s)	215, 228
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	195
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	3 cut(s)	160, 247, 295
CviJI	RGCY	6 cut(s)	213, 251, 392, 412, 479, 517
CviKI_1	RGCY	6 cut(s)	213, 251, 392, 412, 479, 517
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	171, 243, 450
DpnII	GATC	3 cut(s)	169, 241, 448
DrdI	GACNNNNNNGTC	2 cut(s)	274, 332
DseDI	GACNNNNNNGTC	2 cut(s)	274, 332
EciI	GGCGGA	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	215, 228
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	3 cut(s)	163, 250, 298
FaiI	YATR	6 cut(s)	32, 105, 161, 183, 248, 296
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	3 cut(s)	159, 246, 294
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
HapII	CCGG	3 cut(s)	117, 339, 469
Hin1II	CATG	3 cut(s)	163, 250, 298
HinfI	GANTC	3 cut(s)	326, 377, 463
HpaII	CCGG	3 cut(s)	117, 339, 469
HphI	GGTGA	2 cut(s)	244, 270
Hpy166II	GTNNAC	2 cut(s)	68, 197
Hpy188I	TCNGA	3 cut(s)	382, 402, 453
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	2 cut(s)	68, 197
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	79, 316, 361
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	224, 298, 443
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	163, 250, 298
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	169, 241, 448
LmnI	GCTCC	2 cut(s)	400, 409
LpnPI	CCDG	9 cut(s)	19, 130, 202, 215, 229, 242, 294, 352, 482
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	337
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	3 cut(s)	171, 243, 450
MboI	GATC	3 cut(s)	169, 241, 448
MboII	GAAGA	2 cut(s)	138, 296
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	2 cut(s)	90, 237
MlyI	GAGTC	2 cut(s)	320, 386
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	5 cut(s)	160, 180, 318, 371, 408
MseI	TTAA	2 cut(s)	135, 489
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	3 cut(s)	117, 339, 469
MspR9I	CCNGG	2 cut(s)	217, 230
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	2 cut(s)	217, 230
NdeII	GATC	3 cut(s)	169, 241, 448
NlaIII	CATG	3 cut(s)	163, 250, 298
NlaIV	GGNNCC	1 cut(s)	171
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	276
NspV	TTCGAA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	463
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	2 cut(s)	320, 385
PpsI	GAGTC	2 cut(s)	320, 385
Psp6I	CCWGG	2 cut(s)	215, 228
PspGI	CCWGG	2 cut(s)	215, 228
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	135, 489
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	169, 241, 448
Sau96I	GGNCC	1 cut(s)	471
SchI	GAGTC	2 cut(s)	320, 386
ScrFI	CCNGG	2 cut(s)	217, 230
SetI	ASST	5 cut(s)	90, 234, 336, 394, 414
SfaNI	GCATC	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	90, 237
SsiI	CCGC	3 cut(s)	21, 369, 407
StyD4I	CCNGG	2 cut(s)	215, 228
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	83, 481
TasI	AATT	2 cut(s)	90, 237
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	135, 489
Tru9I	TTAA	2 cut(s)	135, 489
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	4 cut(s)	19, 26, 114, 120
VpaK11BI	GGWCC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.