Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Reverse (-)

6184861 .. 6193068

Gene Structure 8208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAATCAAGGGTTGTCAAAGACTCCCACACAGAAGGAGCTCAGTGGAAGAATCGAAGCAAGCCACAATGGAAGTCGCGAATCCTATTCCAATTCCATGTCATTATTTGTGTTAGAAGAGGAAGTGACACTGGAGTCACTATCCAGACCTACCAGGTGTCTAATGTTGATAAGGTGAGAATTGATCACATGGCTGTTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGTGTGCAAAGTGCTATGTGACCAGTATGGCTGACATTAGTATGACTTTGTTTTCGATATGTCCTTGTGATTTCATTCCTGTGACGGCACCGGGTTTGGGCGATAGGGGTTATGCCAAAATTTCTAGGGTGGAGATGGAGGAGTGTCCACAAAGATTGCATGGAATAGGACAATCTCAATCTGGAGTTAGAACCAAATTTTTGCTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

9.42

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	134, 217
AccB1I	GGYRCC	1 cut(s)	349
AccII	CGCG	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	381, 458
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw21I	GWGCWC	1 cut(s)	43
ApoI	RAATTY	2 cut(s)	381, 458
ArsI	GACNNNNNNTTYG	2 cut(s)	298, 330
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	2 cut(s)	187, 213
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	43
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	155, 354
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	155, 354
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	2 cut(s)	153, 465
BpuMI	CCSGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	136, 224, 285
BseBI	CCWGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	3 cut(s)	136, 224, 285
BseRI	GAGGAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	184
Bsp68I	TCGCGA	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	136, 224, 285
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	153, 352
BstUI	CGCG	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	226
BtsIMutI	CAGTG	3 cut(s)	50, 129, 269
BtuMI	TCGCGA	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	62
CsiI	ACCWGGT	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	399, 434
CviAII	CATG	3 cut(s)	98, 190, 422
CviJI	RGCY	4 cut(s)	41, 64, 194, 293
CviKI_1	RGCY	4 cut(s)	41, 64, 194, 293
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DrdI	GACNNNNNNGTC	2 cut(s)	134, 217
DseDI	GACNNNNNNGTC	2 cut(s)	134, 217
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	3 cut(s)	101, 193, 425
FatI	CATG	3 cut(s)	97, 189, 421
FbaI	TGATCA	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	387
GsuI	CTGGAG	2 cut(s)	153, 465
HapII	CCGG	1 cut(s)	353
Hin1II	CATG	3 cut(s)	101, 193, 425
HinfI	GANTC	4 cut(s)	23, 52, 81, 135
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	2 cut(s)	187, 213
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188III	TCNNGA	3 cut(s)	78, 145, 444
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	269, 421
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	101, 193, 425
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	9 cut(s)	117, 140, 158, 167, 237, 298, 354, 366, 429
MabI	ACCWGGT	1 cut(s)	153
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	5 cut(s)	125, 136, 219, 280, 343
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	3 cut(s)	61, 129, 239
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	4 cut(s)	92, 180, 381, 458
MlyI	GAGTC	2 cut(s)	17, 144
MnlI	CCTC	3 cut(s)	113, 261, 394
MslI	CAYNNNNRTG	2 cut(s)	302, 341
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	155, 354
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	79
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	101, 193, 425
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	5 cut(s)	125, 136, 219, 280, 343
NruI	TCGCGA	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	52, 81
PleI	GAGTC	2 cut(s)	17, 143
PpsI	GAGTC	2 cut(s)	17, 143
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	351
RruI	TCGCGA	1 cut(s)	79
RseI	CAYNNNNRTG	2 cut(s)	302, 341
SacI	GAGCTC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	2 cut(s)	17, 144
ScrFI	CCNGG	2 cut(s)	155, 354
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	4 cut(s)	43, 152, 159, 177
SexAI	ACCWGGT	1 cut(s)	153
SmiMI	CAYNNNNRTG	2 cut(s)	302, 341
Sse9I	AATT	4 cut(s)	92, 180, 381, 458
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	153, 352
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	55, 317
TasI	AATT	4 cut(s)	92, 180, 381, 458
TfiI	GAWTC	2 cut(s)	52, 81
TscAI	CASTG	3 cut(s)	50, 136, 269
TseFI	GTSAC	5 cut(s)	125, 136, 219, 280, 343
Tsp45I	GTSAC	5 cut(s)	125, 136, 219, 280, 343
TspDTI	ATGAA	2 cut(s)	17, 325
TspRI	CASTG	3 cut(s)	50, 136, 269
XapI	RAATTY	2 cut(s)	381, 458
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.