Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Forward (+)

22069185 .. 22069355

Gene Structure 171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGAAGAAAAGTAACGGGTTCCGACACGTACTGGCCAATGGGGCTAGCGGTGGCACCGGAGATCAATCTGAGAACTTTATCGGATCCCAAAGCTTGGGCGGGCAACAGGTTCGCCCACCACGGCGGTTGGCTATTATCGCTGGCGACGGAAGCTCTAATTCGGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

56

Amino Acids

5.71

Weight (kDa)

9.97

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	94
AciI	CCGC	3 cut(s)	48, 99, 124
AclWI	GGATC	2 cut(s)	78, 91
AcoI	YGGCCR	1 cut(s)	33
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	25
AluBI	AGCT	3 cut(s)	93, 153, 167
AluI	AGCT	3 cut(s)	93, 153, 167
AlwI	GGATC	2 cut(s)	78, 91
AoxI	GGCC	1 cut(s)	33
AsuNHI	GCTAGC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BfaI	CTAG	1 cut(s)	45
BglI	GCCNNNNNGGC	1 cut(s)	41
BmiI	GGNNCC	3 cut(s)	20, 55, 85
BmtI	GCTAGC	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	94
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	61, 83
BspACI	CCGC	3 cut(s)	48, 99, 124
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	20, 55, 85
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	78, 91
BspT107I	GGYRCC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	61, 83
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	3 cut(s)	46, 101, 142
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	64, 86
BstMBI	GATC	2 cut(s)	61, 83
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 137, 150
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	119
Cac8I	GCNNGC	3 cut(s)	46, 101, 142
Csp6I	GTAC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviJI	RGCY	6 cut(s)	35, 44, 93, 131, 153, 167
CviKI_1	RGCY	6 cut(s)	35, 44, 93, 131, 153, 167
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	63, 85
DpnII	GATC	2 cut(s)	61, 83
EaeI	YGGCCR	1 cut(s)	33
FauI	CCCGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	57
HindIII	AAGCTT	2 cut(s)	91, 165
HpaII	CCGG	1 cut(s)	57
Hpy188I	TCNGA	4 cut(s)	23, 70, 83, 163
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 137, 150
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	61, 83
LpnPI	CCDG	4 cut(s)	17, 70, 92, 126
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	63, 85
MboI	GATC	2 cut(s)	61, 83
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	157
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	46
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	41, 137, 150
NdeII	GATC	2 cut(s)	61, 83
NheI	GCTAGC	1 cut(s)	44
NlaIV	GGNNCC	3 cut(s)	20, 55, 85
PflMI	CCANNNNNTGG	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	20, 55, 85
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	61, 83
SetI	ASST	5 cut(s)	30, 95, 111, 155, 169
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	3 cut(s)	48, 99, 124
SspMI	CTAG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	30
TasI	AATT	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.