Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Forward (+)

66126653 .. 66128735

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0531100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTCCAGTACACCCTCCGGCGAAGAGTTCACCGTCGCGTTTTGGTTCTCCGCCGTTGCATTCGACACGTCATGGATAGGATTATTACTTGCTGTTTAGGAAAGCCGGTTCACTACCGGATGCTGCCGATTTCGGTTATGACTCCTCCTTCCGGCTCTATCGCCAGCCCTGACTCCGCTGTCAAGGCCGTCCGGCATCAGAAGTCGTCGGCTGCTACGAGTGGTCGGGAAAGCGTAGACTCCAACTTGGTCTCATTGAAGATTAGTCTGTTAGGGGATAGCCAAATCGGAAAGACGAGCTTTTTGGTAAAGTACGTGGGAAGTGATGAGAAAGAAGGAGAGCCACAGACTACAGGGTTGAATTTCATGGATAAAACTCTAATCGTCAGAGATGCTCGGATTTCGTATAGTATTTGGGAAGTTGGAGGTGATAAGAAATCCCAGGACAATATGCAGGTTGCTTGCATGGATTCCGTAGCAATTTTGTTCATGTTCGACTTGACAAGTCGTTGTACGTTAAATAGTATTCCAACATGGTATCACCGAGCCAGAAAATGGAATCAAACGGCAATCCCAATATTGATAGGAACAAAGTTCGATGACTTCATCCAGCTCCCATTAGATTTGCAATGGGCAATCGCGAGTCAGGCAAGAGCTTATGCAAAGGCATTCAACGCAACACTTTTCTTTTCCAGTGCAACCTACAACATAAATGTGAACAAGATCTTCAAATTCATCACAGCCAAGCTCTTTGACTTACCGTGGACCGTCGAGCGGAATCTGACCATTGGAGAGCCCATTATTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

270

Amino Acids

30.54

Weight (kDa)

9.63

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	87 - 250	1.2e-20	Ras family
Roc	PF08477	87 - 200	5.6e-18	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccBSI	CCGCTC	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	39, 641
AciI	CCGC	3 cut(s)	52, 177, 775
AcsI	RAATTY	2 cut(s)	361, 731
AfaI	GTAC	3 cut(s)	11, 314, 514
AfiI	CCNNNNNNNGG	3 cut(s)	152, 555, 774
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	4 cut(s)	259, 361, 673, 730
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	441
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	4 cut(s)	300, 613, 656, 748
AluI	AGCT	4 cut(s)	300, 613, 656, 748
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	124, 212
ApoI	RAATTY	2 cut(s)	361, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	2 cut(s)	4, 765
AsuHPI	GGTGA	3 cut(s)	23, 440, 533
AvaII	GGWCC	2 cut(s)	4, 765
BanII	GRGCYC	1 cut(s)	798
BbvI	GCAGC	2 cut(s)	111, 199
BceAI	ACGGC	3 cut(s)	39, 173, 582
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	811
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	2 cut(s)	125, 213
BlsI	GCNGC	2 cut(s)	126, 214
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	2 cut(s)	4, 765
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	4, 765
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	3 cut(s)	111, 205, 382
BsaAI	YACGTR	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	441, 761
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 555, 774
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	7, 693
Bse3DI	GCAATG	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	441, 761
BseGI	GGATG	2 cut(s)	126, 606
BseLI	CCNNNNNNNGG	3 cut(s)	152, 555, 774
BseMI	GCAATG	1 cut(s)	635
BseNI	ACTGG	2 cut(s)	7, 693
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	111, 199
Bsh1236I	CGCG	2 cut(s)	39, 641
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	5 cut(s)	19, 107, 118, 153, 193
BslI	CCNNNNNNNGG	3 cut(s)	152, 555, 774
BsmAI	GTCTC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	60, 668
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	1 cut(s)	723
Bsp68I	TCGCGA	1 cut(s)	641
BspACI	CCGC	3 cut(s)	52, 177, 775
BspANI	GGCC	1 cut(s)	188
BspFNI	CGCG	2 cut(s)	39, 641
BspMI	ACCTGC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	7, 693
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	441, 761
BssMI	GATC	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	35, 762, 769
Bst6I	CTCTTC	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	166, 463
BstDSI	CCRYGG	1 cut(s)	761
BstF5I	GGATG	2 cut(s)	126, 606
BstFNI	CGCG	2 cut(s)	39, 641
BstKTI	GATC	1 cut(s)	726
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	723
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 647, 674
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	2 cut(s)	39, 641
BstV1I	GCAGC	2 cut(s)	111, 199
BstX2I	RGATCY	1 cut(s)	723
BstYI	RGATCY	1 cut(s)	723
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	761
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	126, 606
BtsIMutI	CAGTG	1 cut(s)	700
BtuMI	TCGCGA	1 cut(s)	641
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	166, 463
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	4, 765
Csp6I	GTAC	3 cut(s)	10, 313, 513
CviAII	CATG	5 cut(s)	73, 367, 466, 490, 534
CviQI	GTAC	3 cut(s)	10, 313, 513
DpnI	GATC	1 cut(s)	725
DpnII	GATC	1 cut(s)	723
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	4, 765
EcoRII	CCWGG	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	798
FaeI	CATG	5 cut(s)	76, 370, 469, 493, 537
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	5 cut(s)	72, 366, 465, 489, 533
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	125, 213
FokI	GGATG	2 cut(s)	133, 593
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	2 cut(s)	125, 213
FspBI	CTAG	1 cut(s)	811
GluI	GCNGC	2 cut(s)	125, 213
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	5 cut(s)	19, 107, 118, 153, 193
Hin1II	CATG	5 cut(s)	76, 370, 469, 493, 537
HinfI	GANTC	7 cut(s)	142, 173, 239, 470, 559, 643, 778
HpaII	CCGG	5 cut(s)	19, 107, 118, 153, 193
HphI	GGTGA	3 cut(s)	23, 440, 533
Hpy166II	GTNNAC	6 cut(s)	12, 31, 112, 238, 718, 765
Hpy188I	TCNGA	5 cut(s)	201, 290, 389, 399, 783
Hpy188III	TCNNGA	2 cut(s)	227, 640
Hpy8I	GTNNAC	6 cut(s)	12, 31, 112, 238, 718, 765
Hpy99I	CGWCG	3 cut(s)	39, 211, 773
HpyAV	CCTTC	2 cut(s)	159, 329
HpyCH4III	ACNGT	3 cut(s)	35, 762, 769
HpyCH4IV	ACGT	3 cut(s)	69, 315, 515
HpyCH4V	TGCA	6 cut(s)	60, 454, 465, 628, 662, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 647, 674
HpySE526I	ACGT	3 cut(s)	69, 315, 515
Hsp92II	CATG	5 cut(s)	76, 370, 469, 493, 537
Kzo9I	GATC	1 cut(s)	723
LmnI	GCTCC	1 cut(s)	618
Lsp1109I	GCAGC	2 cut(s)	111, 199
LweI	GCATC	3 cut(s)	111, 205, 382
MaeI	CTAG	1 cut(s)	811
MaeII	ACGT	3 cut(s)	69, 315, 515
MalI	GATC	1 cut(s)	725
MbiI	CCGCTC	1 cut(s)	775
MboI	GATC	1 cut(s)	723
MboII	GAAGA	3 cut(s)	36, 271, 718
MflI	RGATCY	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	798
MluCI	AATT	3 cut(s)	361, 480, 731
MlyI	GAGTC	4 cut(s)	136, 167, 233, 652
MmeI	TCCRAC	3 cut(s)	267, 403, 554
MnlI	CCTC	3 cut(s)	26, 156, 419
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	5 cut(s)	19, 107, 118, 153, 193
MspR9I	CCNGG	1 cut(s)	443
Mva1269I	GAATGC	2 cut(s)	60, 668
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	2 cut(s)	39, 641
MwoI	GCNNNNNNNGC	3 cut(s)	185, 647, 674
NdeII	GATC	1 cut(s)	723
NlaIII	CATG	5 cut(s)	76, 370, 469, 493, 537
NruI	TCGCGA	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	2 cut(s)	60, 668
PfeI	GAWTC	3 cut(s)	470, 559, 778
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	2 cut(s)	126, 214
PleI	GAGTC	4 cut(s)	136, 167, 233, 651
PpsI	GAGTC	4 cut(s)	136, 167, 233, 651
Ppu21I	YACGTR	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	4, 765
PsuI	RGATCY	1 cut(s)	723
RruI	TCGCGA	1 cut(s)	641
RsaI	GTAC	3 cut(s)	11, 314, 514
RsaNI	GTAC	3 cut(s)	10, 313, 513
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	2 cut(s)	125, 213
Sau3AI	GATC	1 cut(s)	723
Sau96I	GGNCC	2 cut(s)	4, 765
SchI	GAGTC	4 cut(s)	136, 167, 233, 652
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	3 cut(s)	111, 205, 382
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	4, 765
SmiMI	CAYNNNNRTG	1 cut(s)	713
Sse9I	AATT	3 cut(s)	361, 480, 731
SsiI	CCGC	3 cut(s)	52, 177, 775
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	1 cut(s)	811
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	35, 762, 769
TaiI	ACGT	3 cut(s)	72, 318, 518
TaqI	TCGA	4 cut(s)	64, 495, 597, 771
TasI	AATT	3 cut(s)	361, 480, 731
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	470, 559, 778
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	2 cut(s)	124, 212
TspDTI	ATGAA	4 cut(s)	355, 478, 595, 724
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	700
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	4, 765
XapI	RAATTY	2 cut(s)	361, 731
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.