Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Forward (+)

30462192 .. 30470132

Gene Structure 7941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG279400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAACTCGAGCACACTGGATAGGCCGATCCAAACGGTAGAGCACCAAATCCGGGCTGAGCTTGGTTGGGCGGACCGACCCTCCTTGGATCTTATCCCTGTGTCACGTTTACGCAATCGATTCCAGCCCGATCCACCAAATGGGTCTTGCCCCATCTCCTCCACCCATCGTCGTCGATTCCACCACCGCCCAGATGAAATCCGAGAGCTTCTGGGCCCACACACAGGCCTGTGGAGTAAAGGAACTAGAGTGGAGGAGAAAATGAAATCTGATTTGCCTCTTGATTTGCAGTTTTCCAGTTGTCACCCAAGCATTCAAGGAGCTCAGTGGAAGAATCGGAGCAAGCCACAATGGAAGTCGCGAATCCTATTCCAATTCCATGTGAGAATTGATCACATGGCTGTTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAGTTGTGCTCTGCTGCAAAGCATTTCCGTGGTGTAAAGAAAGATACAACTATAGAAGAGTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

180

Amino Acids

21.08

Weight (kDa)

9.99

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccII	CGCG	1 cut(s)	361
AciI	CCGC	2 cut(s)	71, 187
AclWI	GGATC	3 cut(s)	22, 96, 125
AfiI	CCNNNNNNNGG	3 cut(s)	52, 140, 224
AgsI	TTSAA	2 cut(s)	317, 424
AluBI	AGCT	3 cut(s)	61, 208, 323
AluI	AGCT	3 cut(s)	61, 208, 323
Alw21I	GWGCWC	4 cut(s)	14, 45, 325, 486
AlwI	GGATC	3 cut(s)	22, 96, 125
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	3 cut(s)	23, 214, 226
ApaI	GGGCCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	489
AspS9I	GGNCC	3 cut(s)	73, 214, 215
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	296, 420
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	218
BanII	GRGCYC	2 cut(s)	218, 325
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	4 cut(s)	14, 45, 325, 486
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	161, 174
BciVI	GTATCC	1 cut(s)	433
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	526
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	1 cut(s)	490
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	3 cut(s)	73, 214, 215
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	84, 503
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 140, 224
Bse1I	ACTGG	3 cut(s)	21, 297, 431
BseCI	ATCGAT	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	84, 503
BseLI	CCNNNNNNNGG	3 cut(s)	52, 140, 224
BseMII	CTCAG	2 cut(s)	48, 338
BseNI	ACTGG	3 cut(s)	21, 297, 431
BseRI	GAGGAG	2 cut(s)	148, 269
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	3 cut(s)	25, 216, 228
BshVI	ATCGAT	1 cut(s)	118
BsiHKAI	GWGCWC	4 cut(s)	14, 45, 325, 486
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	3 cut(s)	52, 140, 224
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	3 cut(s)	25, 216, 228
BsoBI	CYCGRG	1 cut(s)	7
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	5 cut(s)	14, 45, 218, 325, 486
Bsp143I	GATC	4 cut(s)	27, 88, 130, 391
Bsp1720I	GCTNAGC	1 cut(s)	57
Bsp68I	TCGCGA	1 cut(s)	361
BspACI	CCGC	2 cut(s)	71, 187
BspANI	GGCC	3 cut(s)	25, 216, 228
BspCNI	CTCAG	2 cut(s)	49, 337
BspDI	ATCGAT	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	3 cut(s)	22, 96, 125
BsrI	ACTGG	3 cut(s)	21, 297, 431
BssECI	CCNNGG	2 cut(s)	84, 503
BssMI	GATC	4 cut(s)	27, 88, 130, 391
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	57, 324
BstDSI	CCRYGG	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	361
BstKTI	GATC	4 cut(s)	30, 91, 133, 394
BstMBI	GATC	4 cut(s)	27, 88, 130, 391
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	3 cut(s)	25, 216, 228
BsuTUI	ATCGAT	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	14, 332
BtuMI	TCGCGA	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	73, 214, 215
ClaI	ATCGAT	1 cut(s)	118
CpoI	CGGWCCG	1 cut(s)	73
CspI	CGGWCCG	1 cut(s)	73
CviAII	CATG	2 cut(s)	380, 397
DdeI	CTNAG	2 cut(s)	57, 324
DpnI	GATC	4 cut(s)	29, 90, 132, 393
DpnII	GATC	4 cut(s)	27, 88, 130, 391
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
EciI	GGCGGA	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	218, 325
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	2 cut(s)	218, 325
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	383, 400
FaiI	YATR	5 cut(s)	381, 398, 446, 476, 528
FatI	CATG	2 cut(s)	379, 396
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	490
FriOI	GRGCYC	2 cut(s)	218, 325
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	1 cut(s)	490
HaeIII	GGCC	3 cut(s)	25, 216, 228
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	2 cut(s)	383, 400
HinfI	GANTC	4 cut(s)	120, 177, 334, 363
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	2 cut(s)	296, 420
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	203, 271, 339
Hpy188III	TCNNGA	2 cut(s)	281, 360
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	2 cut(s)	174, 177
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	289, 492
HpyF3I	CTNAG	2 cut(s)	57, 324
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	383, 400
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	27, 88, 130, 391
LmnI	GCTCC	2 cut(s)	320, 339
Lsp1109I	GCAGC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	3 cut(s)	102, 302, 426
MalI	GATC	4 cut(s)	29, 90, 132, 393
MboI	GATC	4 cut(s)	27, 88, 130, 391
MboII	GAAGA	3 cut(s)	343, 446, 543
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	5 cut(s)	14, 45, 218, 325, 486
MluCI	AATT	2 cut(s)	374, 387
MnlI	CCTC	5 cut(s)	91, 169, 247, 288, 468
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	502
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	312
MvnI	CGCG	1 cut(s)	361
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	27, 88, 130, 391
NlaIII	CATG	2 cut(s)	383, 400
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	3 cut(s)	102, 302, 426
NruI	TCGCGA	1 cut(s)	361
PaeR7I	CTCGAG	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	228
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	120, 177, 334, 363
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	216
PspOMI	GGGCCC	1 cut(s)	214
PspPI	GGNCC	3 cut(s)	73, 214, 215
PspXI	VCTCGAGB	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	88
RruI	TCGCGA	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	502
Rsr2I	CGGWCCG	1 cut(s)	73
RsrII	CGGWCCG	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	4 cut(s)	27, 88, 130, 391
Sau96I	GGNCC	3 cut(s)	73, 214, 215
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	5 cut(s)	14, 45, 218, 325, 486
SetI	ASST	4 cut(s)	63, 109, 210, 325
SfcI	CTRYAG	1 cut(s)	526
Sfr274I	CTCGAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	2 cut(s)	374, 387
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	71, 187
SspMI	CTAG	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	325
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	8, 118, 175
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	374, 387
TfiI	GAWTC	4 cut(s)	120, 177, 334, 363
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	2 cut(s)	21, 332
TseFI	GTSAC	3 cut(s)	102, 302, 426
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	3 cut(s)	102, 302, 426
TspDTI	ATGAA	3 cut(s)	17, 210, 278
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	2 cut(s)	21, 332
Van91I	CCANNNNNTGG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	7
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.