Rorug02G0531200

chromosome transmission fidelity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004875
Physical Location & Seq
Reverse (-)
66129350 .. 66130970
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0531200.1

Sequence Viewer

Length: 264 bp
ATGAGCGAGAGTCGACCAGTGCCGCGAAGAGAGAGCCCATGGGGCACGCCGGAGGGAGACCATCGTCAACCCAAGGCCCATCGCTGCAATGACCGAGCTGAGGACGTCATCCAAGCTTGTTTTGAGGGAAACCCCTTTAAGACAGTCCCAGGGCCATTCAAACTCTTCTATCAGTGCATGCGATCTAAACCTGGGGAGGAACCAACAGAGCCATATACATATTTGCAGCTGGATCCTCCAACAAGGGAGGTGAAACTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

87

Amino Acids

10.09

Weight (kDa)

6.12

Isoelectric Point (pI)

74.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 13
AccII CGCG 1 cut(s) 25
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 227, 240
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 148, 190
AluBI AGCT 3 cut(s) 98, 116, 229
AluI AGCT 3 cut(s) 98, 116, 229
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 2 cut(s) 227, 240
AoxI GGCC 2 cut(s) 75, 152
ApeKI GCWGC 2 cut(s) 84, 226
AspS9I GGNCC 2 cut(s) 76, 152
AsuHPI GGTGA 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 47
BamHI GGATCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 71, 238
BccI CCATC 2 cut(s) 69, 87
BciT130I CCWGG 2 cut(s) 150, 192
BcoDI GTCTC 1 cut(s) 51
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 3 cut(s) 23, 85, 227
BlsI GCNGC 3 cut(s) 24, 86, 228
Bme1390I CCNGG 2 cut(s) 150, 192
BmgT120I GGNCC 2 cut(s) 76, 152
BmiI GGNNCC 2 cut(s) 201, 234
BmrFI CCNGG 2 cut(s) 150, 192
BoxI GACNNNNGTC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 5 cut(s) 38, 72, 148, 149, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 2 cut(s) 150, 192
BseDI CCNNGG 5 cut(s) 38, 72, 148, 149, 191
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 47
BseXI GCAGC 2 cut(s) 71, 238
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 77, 154
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 77, 154
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 38, 47
Bsp143I GATC 2 cut(s) 182, 232
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 23
BspANI GGCC 2 cut(s) 77, 154
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 201, 234
BspPI GGATC 2 cut(s) 227, 240
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 5 cut(s) 38, 72, 148, 149, 191
BssMI GATC 2 cut(s) 182, 232
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 38, 72
Bst2UI CCWGG 2 cut(s) 150, 192
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 22, 170
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 47, 179
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 25
BstKTI GATC 2 cut(s) 185, 235
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 2 cut(s) 182, 232
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 2 cut(s) 150, 192
BstNSI RCATGY 1 cut(s) 181
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 2 cut(s) 148, 190
BstSLI GKGCMC 1 cut(s) 47
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 71, 238
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 2 cut(s) 77, 154
BtgI CCRYGG 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 24, 179
Cac8I GCNNGC 2 cut(s) 47, 179
Cfr13I GGNCC 2 cut(s) 76, 152
CviAII CATG 2 cut(s) 39, 178
CviJI RGCY 7 cut(s) 36, 77, 98, 116, 154, 211, 229
CviKI_1 RGCY 7 cut(s) 36, 77, 98, 116, 154, 211, 229
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 184, 234
DpnII GATC 2 cut(s) 182, 232
Eam1104I CTCTTC 2 cut(s) 22, 170
EarI CTCTTC 2 cut(s) 22, 170
Eco130I CCWWGG 2 cut(s) 38, 72
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 148, 190
EcoT14I CCWWGG 2 cut(s) 38, 72
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 2 cut(s) 38, 72
FaeI CATG 2 cut(s) 42, 181
FaiI YATR 5 cut(s) 40, 179, 214, 216, 220
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 38, 177
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 23, 85, 227
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 23, 85, 227
GluI GCNGC 3 cut(s) 23, 85, 227
HaeIII GGCC 2 cut(s) 77, 154
HapII CCGG 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 42, 181
HincII GTYRAC 2 cut(s) 14, 68
HindII GTYRAC 2 cut(s) 14, 68
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 14, 68
Hpy8I GTNNAC 2 cut(s) 14, 68
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 87, 177, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 42, 181
Kzo9I GATC 2 cut(s) 182, 232
LpnPI CCDG 7 cut(s) 30, 63, 135, 162, 177, 204, 215
Lsp1109I GCAGC 2 cut(s) 71, 238
MaeII ACGT 1 cut(s) 105
MalI GATC 2 cut(s) 184, 234
MboI GATC 2 cut(s) 182, 232
MboII GAAGA 2 cut(s) 39, 157
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 38, 47
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 6 cut(s) 46, 94, 118, 190, 241, 246
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 2 cut(s) 150, 192
MvaI CCWGG 2 cut(s) 150, 192
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 42
NcoI CCATGG 1 cut(s) 38
NdeII GATC 2 cut(s) 182, 232
NlaIII CATG 2 cut(s) 42, 181
NlaIV GGNNCC 2 cut(s) 201, 234
NspI RCATGY 1 cut(s) 181
PaeI GCATGC 1 cut(s) 181
PasI CCCWGGG 1 cut(s) 149
PkrI GCNGC 3 cut(s) 24, 86, 228
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PshAI GACNNNNGTC 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 148, 190
PspGI CCWGG 2 cut(s) 148, 190
PspN4I GGNNCC 2 cut(s) 201, 234
PspPI GGNCC 2 cut(s) 76, 152
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 229
SalI GTCGAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 3 cut(s) 23, 85, 227
Sau3AI GATC 2 cut(s) 182, 232
Sau96I GGNCC 2 cut(s) 76, 152
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 150, 192
SduI GDGCHC 2 cut(s) 38, 47
SetI ASST 6 cut(s) 100, 108, 118, 193, 231, 252
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SphI GCATGC 1 cut(s) 181
SsiI CCGC 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 148, 190
StyI CCWWGG 2 cut(s) 38, 72
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 13
TaqII GACCGA 1 cut(s) 108
TauI GCSGC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 2 cut(s) 24, 179
TseI GCWGC 2 cut(s) 84, 226
TspRI CASTG 2 cut(s) 24, 179
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 13
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.