Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Forward (+)

54681397 .. 54683508

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG346000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAAGAAAATTGACGGGTTCCGACACGTACTGGCCAATGAGGCTAGCGGTGGCACCGGAGATCAATCTGAGAACTTTATCGGATCCCAAAGCTTGGGCGGGCAACAGGTGAGAATTGATCACATGGCTGTTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAGTTGTGCTCTGCTGCAAAGCATTTCCGTGGTGTAAAGAAAGATACAACTATAGAAGAGTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

89

Amino Acids

10.01

Weight (kDa)

9.27

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	94
AciI	CCGC	2 cut(s)	48, 99
AclWI	GGATC	2 cut(s)	78, 91
AcoI	YGGCCR	1 cut(s)	33
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	78, 91
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	121, 147
AsuNHI	GCTAGC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	118
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
BmiI	GGNNCC	3 cut(s)	20, 55, 85
BmtI	GCTAGC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	36, 158
BseDI	CCNNGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	36, 158
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	94
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	61, 83, 118
BspACI	CCGC	2 cut(s)	48, 99
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	20, 55, 85
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	78, 91
BspT107I	GGYRCC	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	36, 158
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	3 cut(s)	61, 83, 118
Bst6I	CTCTTC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	46, 101
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	230
BstKTI	GATC	3 cut(s)	64, 86, 121
BstMBI	GATC	3 cut(s)	61, 83, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	46, 101
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	4 cut(s)	35, 44, 93, 128
CviKI_1	RGCY	4 cut(s)	35, 44, 93, 128
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	3 cut(s)	63, 85, 120
DpnII	GATC	3 cut(s)	61, 83, 118
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	125, 173, 203, 255
FatI	CATG	1 cut(s)	123
FauI	CCCGC	1 cut(s)	92
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	91
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	121, 147
Hpy188I	TCNGA	3 cut(s)	23, 70, 83
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	61, 83, 118
LpnPI	CCDG	4 cut(s)	17, 70, 92, 171
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	63, 85, 120
MboI	GATC	3 cut(s)	61, 83, 118
MboII	GAAGA	3 cut(s)	16, 173, 270
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	9, 114
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	34, 195
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	229
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	3 cut(s)	61, 83, 118
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	3 cut(s)	20, 55, 85
NmuCI	GTSAC	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	20, 55, 85
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	3 cut(s)	61, 83, 118
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	3 cut(s)	30, 95, 111
SfcI	CTRYAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	9, 114
SsiI	CCGC	2 cut(s)	48, 99
SspMI	CTAG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	30
TasI	AATT	2 cut(s)	9, 114
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.