Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004875

Physical Location & Seq

Genomic Coordinates Forward (+)

22199015 .. 22208014

Gene Structure 9000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTGTCGGCCGGTGTTGATATTGTCCGCAGATCCGTGCAACCCCTTTCAAGGGTTTATGCCAAGATTTCTAGGGTGGAGATGGATGAGCGTCCACAGAGATTGGATGGAATAGGACAATCTCAATCTGCAGGACGAGTCGGCCCCGAAACCTCGGAGGAGCCGTCCAACGTGGCGGCCGGAGCCGTGGCCGTGGCGAAGAAGCCGGCTGAACCGGAGGAGATCTCGAAACCGAAGAAGGCTCGGTGGACACGTTTTACGGGACCGATCGTGGGCTCAGCTCCACCAACGAGACCCGGCCGAGATCGTCGAGCTTATTACCCAATTGGAGGCCCAAAACCCGACTCCGGCTCCGACCGAGGCCTTGCCTCTCCTAAACGGGAAATGGATTCGGCGTACACATCATTTGCCGGTTTGTTTCCATTATTGTCCAGAGGAACTCTTCCTTTGGTGAAGGTAGATGAGTGCTATTTCGAACCATGTAAATATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

164

Amino Acids

17.73

Weight (kDa)

9.57

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004875)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0327861 RchiOBHm_Chr2g0148071 RchiOBHm_Chr4g0430511 RchiOBHm_Chr5g0079191
rosa_multiflora	Rmu_sc0002858.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138870 Rroxscaffold_4G00301850 Rroxscaffold_6G00397130 Rroxscaffold_6G00423280 Rroxscaffold_6G00423290
rosa_rugosa	Rorug01G0427900 Rorug02G0429700 Rorug02G0531100 Rorug02G0531200 Rorug07G0245700
rosa_samantha	Rh1BG129100 Rh1BG184200 Rh1DG165400 Rh1DG213900 Rh2BG430500 Rh2DG440400 Rh4DG304200 Rh5BG537400 Rh5CG279400 Rh5CG356800 Rh5CG561500 Rh6AG345900 Rh6AG346000 Rh7CG235800
rosa_wichuraiana	Rw1G003350 Rw6G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 176
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	4 cut(s)	9, 177, 189, 298
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	5 cut(s)	51, 52, 272, 329, 347
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	2 cut(s)	281, 314
AluI	AGCT	2 cut(s)	281, 314
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	7 cut(s)	9, 142, 177, 189, 298, 331, 361
AspS9I	GGNCC	3 cut(s)	143, 263, 332
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	463
AsuII	TTCGAA	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	278
BccI	CCATC	2 cut(s)	76, 101
BceAI	ACGGC	3 cut(s)	148, 170, 176
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	129
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	1 cut(s)	177
BlpI	GCTNAGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	3 cut(s)	143, 263, 332
BmiI	GGNNCC	5 cut(s)	145, 162, 184, 264, 352
BmrFI	CCNGG	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu1102I	GCTNAGC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	4 cut(s)	153, 186, 192, 358
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 335, 365
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 52, 272, 329, 347
Bse118I	RCCGGY	3 cut(s)	11, 205, 410
BseDI	CCNNGG	4 cut(s)	153, 186, 192, 358
BseGI	GGATG	2 cut(s)	91, 112
BseLI	CCNNNNNNNGG	5 cut(s)	51, 52, 272, 329, 347
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	173, 233
BseX3I	CGGCCG	3 cut(s)	9, 177, 298
Bsh1285I	CGRYCG	5 cut(s)	12, 180, 270, 301, 358
BshFI	GGCC	7 cut(s)	11, 144, 179, 191, 300, 333, 363
BsiEI	CGRYCG	5 cut(s)	12, 180, 270, 301, 358
BsiSI	CCGG	7 cut(s)	12, 180, 206, 215, 297, 348, 411
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	5 cut(s)	51, 52, 272, 329, 347
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	7 cut(s)	11, 144, 179, 191, 300, 333, 363
Bso31I	GGTCTC	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	4 cut(s)	32, 222, 267, 304
Bsp1720I	GCTNAGC	1 cut(s)	277
BspACI	CCGC	2 cut(s)	28, 176
BspANI	GGCC	7 cut(s)	11, 144, 179, 191, 300, 333, 363
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	5 cut(s)	145, 162, 184, 264, 352
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	286
BsrFI	RCCGGY	3 cut(s)	11, 205, 410
BssAI	RCCGGY	3 cut(s)	11, 205, 410
BssECI	CCNNGG	4 cut(s)	153, 186, 192, 358
BssMI	GATC	4 cut(s)	32, 222, 267, 304
Bst6I	CTCTTC	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	2 cut(s)	186, 192
BstF5I	GGATG	2 cut(s)	91, 112
BstKTI	GATC	4 cut(s)	35, 225, 270, 307
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	4 cut(s)	32, 222, 267, 304
BstMCI	CGRYCG	5 cut(s)	12, 180, 270, 301, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	32, 222
BstYI	RGATCY	2 cut(s)	32, 222
BstZI	CGGCCG	3 cut(s)	9, 177, 298
BsuRI	GGCC	7 cut(s)	11, 144, 179, 191, 300, 333, 363
BtgI	CCRYGG	2 cut(s)	186, 192
BtsCI	GGATG	2 cut(s)	91, 112
Cac8I	GCNNGC	1 cut(s)	207
Cfr10I	RCCGGY	3 cut(s)	11, 205, 410
Cfr13I	GGNCC	3 cut(s)	143, 263, 332
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	397
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	1 cut(s)	480
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	4 cut(s)	34, 224, 269, 306
DpnII	GATC	4 cut(s)	32, 222, 267, 304
EaeI	YGGCCR	4 cut(s)	9, 177, 189, 298
EagI	CGGCCG	3 cut(s)	9, 177, 298
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EclXI	CGGCCG	3 cut(s)	9, 177, 298
Eco147I	AGGCCT	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	263
Eco52I	CGGCCG	3 cut(s)	9, 177, 298
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	1 cut(s)	483
FaiI	YATR	3 cut(s)	60, 481, 489
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	479
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	2 cut(s)	98, 119
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	7 cut(s)	11, 144, 179, 191, 300, 333, 363
HapII	CCGG	7 cut(s)	12, 180, 206, 215, 297, 348, 411
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	483
HinfI	GANTC	3 cut(s)	138, 344, 389
HpaII	CCGG	7 cut(s)	12, 180, 206, 215, 297, 348, 411
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	3 cut(s)	95, 249, 399
Hpy188I	TCNGA	2 cut(s)	157, 355
Hpy188III	TCNNGA	2 cut(s)	226, 432
Hpy8I	GTNNAC	3 cut(s)	95, 249, 399
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	2 cut(s)	232, 448
HpyCH4IV	ACGT	2 cut(s)	171, 253
HpyCH4V	TGCA	2 cut(s)	40, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	277
HpySE526I	ACGT	2 cut(s)	171, 253
Hsp92II	CATG	1 cut(s)	483
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	32, 222, 267, 304
LmnI	GCTCC	4 cut(s)	160, 182, 286, 356
LpnPI	CCDG	9 cut(s)	25, 117, 193, 219, 228, 310, 361, 424, 445
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	2 cut(s)	171, 253
MalI	GATC	4 cut(s)	34, 224, 269, 306
MboI	GATC	4 cut(s)	32, 222, 267, 304
MboII	GAAGA	3 cut(s)	211, 247, 434
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	2 cut(s)	32, 222
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	147, 338
MmeI	TCCRAC	2 cut(s)	192, 378
MnlI	CCTC	7 cut(s)	151, 163, 211, 323, 353, 379, 428
MroNI	GCCGGC	1 cut(s)	205
MspI	CCGG	7 cut(s)	12, 180, 206, 215, 297, 348, 411
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	182
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	32, 222, 267, 304
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	483
NlaIV	GGNNCC	5 cut(s)	145, 162, 184, 264, 352
NmeAIII	GCCGAG	1 cut(s)	326
NspV	TTCGAA	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 250
PdiI	GCCGGC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	178
Ple19I	CGATCG	1 cut(s)	270
PleI	GAGTC	2 cut(s)	146, 338
PpsI	GAGTC	2 cut(s)	146, 338
PspN4I	GGNNCC	5 cut(s)	145, 162, 184, 264, 352
PspPI	GGNCC	3 cut(s)	143, 263, 332
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	32, 222
PvuI	CGATCG	1 cut(s)	270
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	4 cut(s)	32, 222, 267, 304
Sau96I	GGNCC	3 cut(s)	143, 263, 332
SchI	GAGTC	2 cut(s)	147, 338
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	6 cut(s)	155, 174, 256, 283, 316, 459
SfcI	CTRYAG	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	1 cut(s)	324
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	2 cut(s)	28, 176
SspMI	CTAG	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	295
TaiI	ACGT	2 cut(s)	174, 256
TaqI	TCGA	3 cut(s)	227, 310, 474
TaqII	GACCGA	2 cut(s)	280, 372
TasI	AATT	1 cut(s)	324
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	263
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.