Rmu_sc0002862.1_g000014

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002862.1
OG0003339
Physical Location & Seq
Forward (+)
36666 .. 37432
767 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
atggcggccgcagctcgggctttcactctctctcgcctcaccgacttgtcactcaagccccgccacccacaaccaccaccgcctcctgtttcccaccaccaactcctcgcccgccaattacttccctccttccgcgcccaacggcgtcgtctggcctgctcggcttccacaatccgatgcctcatctccggcgtcggcggcggcggcgtgtccgacgagttcgtctcgacgcggaagtccagcttccaccgcggattctccgttatcgccaatatgctaaagcggattaagctgcttgacagctccgttatctctaaaggcatttccgattccgctaaggactcgatgaagcagaccatctctactatgcttggattgctgtcgtccgatcagttctccgtcaccgttagggtttgcagagctccccttgatcgcctcatcgcctcttccataatcactgggtatacactgtggaacgcggagtatcggatatcgttgataaggaattttgacatttctacggagaattctgtggctttggatgggtcgaagatagatgggagttcggagacggtggatggtgaggaaaggggtagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

199

Amino Acids

21.59

Weight (kDa)

10.01

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 91 - 169 1.7e-19 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 221, 235
AccI GTMKAC 1 cut(s) 464
AccII CGCG 4 cut(s) 135, 232, 252, 479
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 505, 526
AcyI GRCGYC 2 cut(s) 145, 192
AfiI CCNNNNNNNGG 1 cut(s) 15
AluBI AGCT 6 cut(s) 14, 243, 292, 303, 422, 597
AluI AGCT 6 cut(s) 14, 243, 292, 303, 422, 597
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 229, 563
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 2 cut(s) 6, 153
ApeKI GCWGC 2 cut(s) 11, 292
ApoI RAATTY 2 cut(s) 505, 526
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 31, 394, 593
AvaI CYCGRG 1 cut(s) 15
BanII GRGCYC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 23, 279
BccI CCATC 4 cut(s) 365, 536, 551, 572
BceAI ACGGC 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 229, 563
BfaI CTAG 1 cut(s) 598
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 7 cut(s) 6, 9, 12, 199, 202, 205, 293
BlsI GCNGC 7 cut(s) 7, 10, 13, 200, 203, 206, 294
BmeT110I CYCGRG 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 209, 241
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 145, 192
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 463
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 547, 583
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 95
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 23, 279
Bsh1236I CGCG 4 cut(s) 135, 232, 252, 479
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 155
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 2 cut(s) 229, 563
BsmBI CGTCTC 2 cut(s) 229, 563
BsnI GGCC 2 cut(s) 8, 155
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 2 cut(s) 388, 430
BspANI GGCC 2 cut(s) 8, 155
BspFNI CGCG 4 cut(s) 135, 232, 252, 479
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 388, 430
BssNAI GTATAC 1 cut(s) 465
BssNI GRCGYC 2 cut(s) 145, 192
Bst1107I GTATAC 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 406, 471, 574
Bst6I CTCTTC 1 cut(s) 451
BstACI GRCGYC 2 cut(s) 145, 192
BstC8I GCNNGC 2 cut(s) 112, 157
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 547, 583
BstFNI CGCG 4 cut(s) 135, 232, 252, 479
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 391, 433
BstMAI GTCTC 2 cut(s) 229, 563
BstMBI GATC 2 cut(s) 388, 430
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 8 cut(s) 11, 17, 161, 198, 204, 249, 289, 376
BstUI CGCG 4 cut(s) 135, 232, 252, 479
BstV1I GCAGC 2 cut(s) 23, 279
BstZ17I GTATAC 1 cut(s) 465
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 155
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 424
BtsCI GGATG 2 cut(s) 547, 583
BtsIMutI CAGTG 2 cut(s) 456, 467
Cac8I GCNNGC 2 cut(s) 112, 157
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 137
Cfr42I CCGCGG 1 cut(s) 253
CseI GACGC 3 cut(s) 134, 181, 238
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 390, 432
DpnII GATC 2 cut(s) 388, 430
DrdI GACNNNNNNGTC 2 cut(s) 221, 235
DseDI GACNNNNNNGTC 2 cut(s) 221, 235
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
Ecl136II GAGCTC 1 cut(s) 422
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 492
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 422
Eco88I CYCGRG 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 526
EcoRV GATATC 1 cut(s) 492
EcoT38I GRGCYC 1 cut(s) 424
Esp3I CGTCTC 2 cut(s) 229, 563
FaiI YATR 4 cut(s) 275, 368, 452, 465
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FauI CCCGC 2 cut(s) 68, 119
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 7 cut(s) 6, 9, 12, 199, 202, 205, 293
FokI GGATG 2 cut(s) 554, 590
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 7 cut(s) 6, 9, 12, 199, 202, 205, 293
FspBI CTAG 1 cut(s) 598
GlaI GCGC 1 cut(s) 136
GluI GCNGC 7 cut(s) 6, 9, 12, 199, 202, 205, 293
HaeIII GGCC 2 cut(s) 8, 155
HapII CCGG 1 cut(s) 189
HgaI GACGC 3 cut(s) 134, 181, 238
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 145, 192
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 3 cut(s) 255, 329, 341
HpaII CCGG 1 cut(s) 189
HphI GGTGA 3 cut(s) 31, 394, 593
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 6 cut(s) 176, 214, 328, 388, 489, 568
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 465
Hpy99I CGWCG 4 cut(s) 150, 197, 218, 232
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 406, 471, 574
HpyCH4V TGCA 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 17, 161, 198, 204, 249, 289, 376
HpyF3I CTNAG 1 cut(s) 336
Hsp92I GRCGYC 2 cut(s) 145, 192
HspAI GCGC 1 cut(s) 135
KspI CCGCGG 1 cut(s) 253
Kzo9I GATC 2 cut(s) 388, 430
LmnI GCTCC 2 cut(s) 308, 427
LpnPI CCDG 6 cut(s) 99, 137, 169, 202, 253, 444
Lsp1109I GCAGC 2 cut(s) 23, 279
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 598
MaeIII GTNAC 2 cut(s) 48, 400
MalI GATC 2 cut(s) 390, 432
MboI GATC 2 cut(s) 388, 430
MboII GAAGA 2 cut(s) 438, 562
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 3 cut(s) 116, 505, 526
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 8 cut(s) 47, 93, 116, 136, 191, 446, 454, 577
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 189
MvnI CGCG 4 cut(s) 135, 232, 252, 479
MwoI GCNNNNNNNGC 8 cut(s) 11, 17, 161, 198, 204, 249, 289, 376
NdeII GATC 2 cut(s) 388, 430
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 48, 400
NotI GCGGCCGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 255, 329
PkrI GCNGC 7 cut(s) 7, 10, 13, 200, 203, 206, 294
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 424
SacI GAGCTC 1 cut(s) 424
SacII CCGCGG 1 cut(s) 253
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 7 cut(s) 6, 9, 12, 199, 202, 205, 293
Sau3AI GATC 2 cut(s) 388, 430
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 424
SetI ASST 6 cut(s) 16, 245, 294, 305, 424, 599
SfaNI GCATC 1 cut(s) 167
Sfr303I CCGCGG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 3 cut(s) 116, 505, 526
SspMI CTAG 1 cut(s) 598
SstI GAGCTC 1 cut(s) 424
TaaI ACNGT 3 cut(s) 406, 471, 574
TaqI TCGA 3 cut(s) 227, 344, 548
TasI AATT 3 cut(s) 116, 505, 526
TauI GCSGC 5 cut(s) 8, 11, 201, 204, 207
TfiI GAWTC 2 cut(s) 255, 329
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 463, 474
TseFI GTSAC 2 cut(s) 48, 400
TseI GCWGC 2 cut(s) 11, 292
Tsp45I GTSAC 2 cut(s) 48, 400
TspDTI ATGAA 1 cut(s) 362
TspGWI ACGGA 4 cut(s) 250, 295, 388, 536
TspRI CASTG 2 cut(s) 463, 474
XapI RAATTY 2 cut(s) 505, 526
XmiI GTMKAC 1 cut(s) 464
XspI CTAG 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.