Rmu_sc0002928.1_g000009

Inositol oxygenase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002928.1
OG0001948
Physical Location & Seq
Reverse (-)
64654 .. 69838
5185 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
atgaccatcctcattgagcagcaggagcaccaacctgagtttggagttgaaggtggaggagggaaggaggttgttgtggatgaaaaagaattggtcttggatggtggatttttggtgccacataccaactcctttggacaaacttttagggattatgatgcagaaggtgagaggcaaccaagtgtggagaaattctacaagatcaatcacattaaccagacttatgacttcgtccagagaatgagaaaagagtacagcaaattgaacagggtggagatgagcatatgggaatgctgtgaacttctcaatgaggttgtagacgagagtgatccagacttagatgaacctcaaattgagcacttattgcaaacagctgaagccattagaaaggactatcccaatgaagattggctacacttgactggccttatccatgatcttgggaaggtgcttcttcttccttgctttggggagcttcctcaatgggctgttgtaggtgacactttcccagttggttgtgcttttgacgagtccattgttcaccacaagtatttcaaggagaatcccgactacaacaatccggcttacaagactaaacatggagtttactctgagaaatgtggacttaacaacgtattgatgtcatgggggcatgatgactacatgtatctggtggccaaagaaaataagaccactctaccttcagcagctcttttcgtcattagataccactcattctatgctttacacagggcgggagcctacaagcacttgatgaatgaagaggatgtcgaaaacttgaagtggcttcatgtattcaacaagtatgacctttacagcaagagcaaggttcgggttgatgttgagaaggtgaagccgtactatctctctctcattgaaaagtacttcccagctgccaagctaagatgcaagtttgctagcaagaattttgttagacaagaaatgtcagggggttctatgaggtttgctctggtgactctgttcatcttcgcaatggttctgtctccgattacaacatccgaggctgcacggttcacgtttctaaatacaactcccatatgtcctgcttgtgtttgctgcgtacctgcaccacggggctcttgctgcgattgttgtgccacaccgattgaacctcagtccgagcaaggggctccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00053 ko00562 map00053 map00562
Pfam Domains
Protein Families
MIOX

Protein Analysis

392

Amino Acids

44.83

Weight (kDa)

5.43

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIOX PF05153 61 - 305 8.6e-126 Myo-inositol oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1114
AccB1I GGYRCC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 318
AciI CCGC 1 cut(s) 755
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 675
AcsI RAATTY 2 cut(s) 191, 946
AcuI CTGAAG 2 cut(s) 396, 687
AfaI GTAC 4 cut(s) 254, 881, 905, 1104
AfiI CCNNNNNNNGG 3 cut(s) 41, 467, 1167
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 7 cut(s) 50, 265, 556, 802, 820, 899, 1151
AluBI AGCT 5 cut(s) 374, 475, 710, 914, 922
AluI AGCT 5 cut(s) 374, 475, 710, 914, 922
Alw21I GWGCWC 2 cut(s) 30, 360
Alw26I GTCTC 1 cut(s) 1029
AlwI GGATC 1 cut(s) 323
AoxI GGCC 2 cut(s) 424, 675
ApeKI GCWGC 6 cut(s) 19, 707, 914, 1046, 1098, 1125
ApoI RAATTY 2 cut(s) 191, 946
AsuHPI GGTGA 5 cut(s) 179, 509, 533, 883, 1006
AsuNHI GCTAGC 1 cut(s) 938
BalI TGGCCA 1 cut(s) 677
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 2 cut(s) 1121, 1174
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
Bbv12I GWGCWC 2 cut(s) 30, 360
BbvI GCAGC 6 cut(s) 31, 719, 901, 1033, 1085, 1112
BccI CCATC 2 cut(s) 14, 95
BceAI ACGGC 1 cut(s) 862
BcgI CGANNNNNNTGC 2 cut(s) 1118, 1152
BcoDI GTCTC 1 cut(s) 1029
BfaI CTAG 1 cut(s) 939
BfuAI ACCTGC 1 cut(s) 1114
BisI GCNGC 6 cut(s) 20, 708, 915, 1047, 1099, 1126
BlsI GCNGC 6 cut(s) 21, 709, 916, 1048, 1100, 1127
BmcAI AGTACT 1 cut(s) 905
BmiI GGNNCC 3 cut(s) 117, 760, 1173
BmrI ACTGGG 1 cut(s) 503
BmsI GCATC 2 cut(s) 148, 917
BmtI GCTAGC 1 cut(s) 942
BmuI ACTGGG 1 cut(s) 503
BplI GAGNNNNNCTC 2 cut(s) 973, 1005
BsaJI CCNNGG 2 cut(s) 1041, 1112
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 467, 1167
Bse1I ACTGG 2 cut(s) 427, 509
Bse3DI GCAATG 1 cut(s) 1020
BseDI CCNNGG 2 cut(s) 1041, 1112
BseGI GGATG 5 cut(s) 6, 85, 106, 793, 1037
BseLI CCNNNNNNNGG 3 cut(s) 41, 467, 1167
BseMI GCAATG 1 cut(s) 1020
BseMII CTCAG 3 cut(s) 27, 603, 1169
BseNI ACTGG 2 cut(s) 427, 509
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 6 cut(s) 31, 719, 901, 1033, 1085, 1112
BseYI CCCAGC 1 cut(s) 910
BsgI GTGCAG 2 cut(s) 1032, 1092
BshFI GGCC 2 cut(s) 426, 677
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 2 cut(s) 30, 360
BsiSI CCGG 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 41, 467, 1167
BsmAI GTCTC 1 cut(s) 1029
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 2 cut(s) 426, 677
Bsp1286I GDGCHC 4 cut(s) 30, 360, 1121, 1174
Bsp143I GATC 3 cut(s) 201, 328, 436
BspACI CCGC 1 cut(s) 755
BspANI GGCC 2 cut(s) 426, 677
BspCNI CTCAG 3 cut(s) 28, 604, 1168
BspLI GGNNCC 3 cut(s) 117, 760, 1173
BspMI ACCTGC 1 cut(s) 1114
BspOI GCTAGC 1 cut(s) 942
BspPI GGATC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 1020
BsrI ACTGG 2 cut(s) 427, 509
BssECI CCNNGG 2 cut(s) 1041, 1112
BssMI GATC 3 cut(s) 201, 328, 436
Bst4CI ACNGT 1 cut(s) 1053
Bst6I CTCTTC 1 cut(s) 777
BstAPI GCANNNNNTGC 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 940
BstDEI CTNAG 5 cut(s) 36, 337, 612, 923, 1155
BstDSI CCRYGG 1 cut(s) 1112
BstF5I GGATG 5 cut(s) 6, 85, 106, 793, 1037
BstKTI GATC 3 cut(s) 204, 331, 439
BstMAI GTCTC 1 cut(s) 1029
BstMBI GATC 3 cut(s) 201, 328, 436
BstMWI GCNNNNNNNGC 3 cut(s) 25, 364, 1125
BstNSI RCATGY 1 cut(s) 667
BstV1I GCAGC 6 cut(s) 31, 719, 901, 1033, 1085, 1112
BstXI CCANNNNNNTGG 1 cut(s) 440
BsuRI GGCC 2 cut(s) 426, 677
BtgI CCRYGG 1 cut(s) 1112
BtsCI GGATG 5 cut(s) 6, 85, 106, 793, 1037
BveI ACCTGC 1 cut(s) 1114
Cac8I GCNNGC 1 cut(s) 940
Csp6I GTAC 4 cut(s) 253, 880, 904, 1103
CspCI CAANNNNNGTGG 2 cut(s) 1129, 1164
CviAII CATG 6 cut(s) 434, 599, 645, 653, 664, 812
CviQI GTAC 4 cut(s) 253, 880, 904, 1103
DdeI CTNAG 5 cut(s) 36, 337, 612, 923, 1155
DpnI GATC 3 cut(s) 203, 330, 438
DpnII GATC 3 cut(s) 201, 328, 436
EaeI YGGCCR 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
Eco24I GRGCYC 2 cut(s) 1121, 1174
Eco57I CTGAAG 2 cut(s) 396, 687
EcoT38I GRGCYC 2 cut(s) 1121, 1174
FaeI CATG 6 cut(s) 437, 602, 648, 656, 667, 815
FatI CATG 6 cut(s) 433, 598, 644, 652, 663, 811
FauI CCCGC 1 cut(s) 748
FauNDI CATATG 2 cut(s) 284, 1079
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 6 cut(s) 20, 708, 915, 1047, 1099, 1126
FokI GGATG 4 cut(s) 92, 113, 800, 1024
FriOI GRGCYC 2 cut(s) 1121, 1174
Fsp4HI GCNGC 6 cut(s) 20, 708, 915, 1047, 1099, 1126
FspBI CTAG 1 cut(s) 939
GluI GCNGC 6 cut(s) 20, 708, 915, 1047, 1099, 1126
GsaI CCCAGC 1 cut(s) 914
HaeIII GGCC 2 cut(s) 426, 677
HapII CCGG 1 cut(s) 581
Hin1II CATG 6 cut(s) 437, 602, 648, 656, 667, 815
HinfI GANTC 3 cut(s) 530, 562, 997
HpaII CCGG 1 cut(s) 581
HphI GGTGA 5 cut(s) 179, 509, 533, 883, 1006
Hpy166II GTNNAC 6 cut(s) 299, 319, 541, 607, 623, 1056
Hpy188I TCNGA 4 cut(s) 613, 1029, 1042, 1162
Hpy188III TCNNGA 3 cut(s) 235, 332, 566
Hpy8I GTNNAC 6 cut(s) 299, 319, 541, 607, 623, 1056
HpyAV CCTTC 6 cut(s) 44, 58, 158, 439, 711, 862
HpyCH4III ACNGT 1 cut(s) 1053
HpyCH4IV ACGT 2 cut(s) 633, 1058
HpyCH4V TGCA 5 cut(s) 161, 367, 930, 1049, 1109
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 364, 1125
HpyF3I CTNAG 5 cut(s) 36, 337, 612, 923, 1155
HpySE526I ACGT 2 cut(s) 633, 1058
Hsp92II CATG 6 cut(s) 437, 602, 648, 656, 667, 815
Kzo9I GATC 3 cut(s) 201, 328, 436
LmnI GCTCC 4 cut(s) 25, 472, 758, 1177
Lsp1109I GCAGC 6 cut(s) 31, 719, 901, 1033, 1085, 1112
LweI GCATC 2 cut(s) 148, 917
MaeI CTAG 1 cut(s) 939
MaeII ACGT 2 cut(s) 633, 1058
MaeIII GTNAC 2 cut(s) 497, 994
MalI GATC 3 cut(s) 203, 330, 438
MboI GATC 3 cut(s) 201, 328, 436
MboII GAAGA 5 cut(s) 416, 446, 449, 794, 1000
MhlI GDGCHC 4 cut(s) 30, 360, 1121, 1174
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 5 cut(s) 89, 191, 260, 351, 946
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 2 cut(s) 539, 991
Mox20I TGGCCA 1 cut(s) 677
MscI TGGCCA 1 cut(s) 677
MseI TTAA 2 cut(s) 213, 627
Msp20I TGGCCA 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 374, 914
MspI CCGG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 25, 364, 1125
NdeI CATATG 2 cut(s) 284, 1079
NdeII GATC 3 cut(s) 201, 328, 436
NheI GCTAGC 1 cut(s) 938
NlaIII CATG 6 cut(s) 437, 602, 648, 656, 667, 815
NlaIV GGNNCC 3 cut(s) 117, 760, 1173
NmuCI GTSAC 2 cut(s) 497, 994
NspI RCATGY 1 cut(s) 667
PciI ACATGT 1 cut(s) 663
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 562
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 6 cut(s) 21, 709, 916, 1048, 1100, 1127
PleI GAGTC 2 cut(s) 538, 991
PpsI GAGTC 2 cut(s) 538, 991
PscI ACATGT 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 910
PspN4I GGNNCC 3 cut(s) 117, 760, 1173
PsyI GACNNNGTC 1 cut(s) 230
PvuII CAGCTG 2 cut(s) 374, 914
RsaI GTAC 4 cut(s) 254, 881, 905, 1104
RsaNI GTAC 4 cut(s) 253, 880, 904, 1103
SaqAI TTAA 2 cut(s) 213, 627
SatI GCNGC 6 cut(s) 20, 708, 915, 1047, 1099, 1126
Sau3AI GATC 3 cut(s) 201, 328, 436
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 2 cut(s) 539, 991
SduI GDGCHC 4 cut(s) 30, 360, 1121, 1174
SfaNI GCATC 2 cut(s) 148, 917
Sse9I AATT 5 cut(s) 89, 191, 260, 351, 946
SsiI CCGC 1 cut(s) 755
SspMI CTAG 1 cut(s) 939
TaaI ACNGT 1 cut(s) 1053
TaiI ACGT 2 cut(s) 636, 1061
TaqI TCGA 1 cut(s) 792
TasI AATT 5 cut(s) 89, 191, 260, 351, 946
TatI WGTACW 2 cut(s) 252, 903
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 2 cut(s) 213, 627
Tru9I TTAA 2 cut(s) 213, 627
TseFI GTSAC 2 cut(s) 497, 994
TseI GCWGC 6 cut(s) 19, 707, 914, 1046, 1098, 1125
Tsp45I GTSAC 2 cut(s) 497, 994
TspDTI ATGAA 7 cut(s) 96, 357, 417, 791, 795, 800, 994
Tth111I GACNNNGTC 1 cut(s) 230
XapI RAATTY 2 cut(s) 191, 946
XceI RCATGY 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 1 cut(s) 939
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.