Rmu_sc0003262.1_g000021

Mitochondrial ATP synthase g subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003262.1
OG0002646
Physical Location & Seq
Reverse (-)
65898 .. 69156
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
atgtactggcatggtcgatcagggacatcgccagctgactcatttttagggtttgaagctgtggagccaaacaacttttctctgaaggatattacactcccttggaatgaacaaaacaatatggatcttcttctttatcagagtcatcattatgatggttcctcaatcgtcccctcgcaagagcttcgcactctctctctcttcggctttgaattcgattccgacgaaggattgacccgggcatcgatggccgcgatggcatcaaagttgcgtcagttgcagtccaaggcttgccaagcgactcaatttgtgtccaagcatggaactacctactacaaacagttgttagagcagaacaagcaatacattcaggagccggcaactgtggagaaatgcagtgagctgtcaaagcaattgttttacactcgacttgctagtcttccgggtcggaatgaagcactgcggaaggaacttgattatgtcaagagtttgtggaaaaacaggcaggatttgaaggttgaagatgctggcattgctgctttgtttgggctggagtgcttctgctggttttgtgttggtgagattgcaggaaggggattcactatcaccggttaccatgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

207

Amino Acids

23.53

Weight (kDa)

5.97

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_G PF04718 100 - 206 1.2e-21 Mitochondrial ATP synthase g subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 435
AccII CGCG 1 cut(s) 254
AciI CCGC 2 cut(s) 252, 463
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 5
AgeI ACCGGT 1 cut(s) 608
AgsI TTSAA 4 cut(s) 56, 212, 514, 521
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 4 cut(s) 35, 59, 184, 403
AluI AGCT 4 cut(s) 35, 59, 184, 403
AlwI GGATC 1 cut(s) 132
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 1 cut(s) 212
AsiGI ACCGGT 1 cut(s) 608
AsuC2I CCSGG 3 cut(s) 238, 239, 444
AsuHPI GGTGA 2 cut(s) 590, 598
AvaI CYCGRG 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 523
BccI CCATC 3 cut(s) 149, 241, 250
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcnI CCSGG 3 cut(s) 238, 239, 444
BfaI CTAG 1 cut(s) 435
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 2 cut(s) 252, 537
BlsI GCNGC 2 cut(s) 253, 538
Bme1390I CCNGG 3 cut(s) 238, 239, 444
BmeT110I CYCGRG 1 cut(s) 237
BmiI GGNNCC 3 cut(s) 66, 160, 375
BmrFI CCNGG 3 cut(s) 238, 239, 444
BmsI GCATC 3 cut(s) 251, 269, 514
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 572
BpuMI CCSGG 3 cut(s) 238, 239, 444
Bsa29I ATCGAT 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 101, 237, 285
BsaWI WCCGGW 1 cut(s) 608
Bse118I RCCGGY 2 cut(s) 376, 608
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 531
BseCI ATCGAT 1 cut(s) 245
BseDI CCNNGG 3 cut(s) 101, 237, 285
BseMI GCAATG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 1 cut(s) 251
BshTI ACCGGT 1 cut(s) 608
BshVI ATCGAT 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 4 cut(s) 238, 377, 443, 609
BslFI GGGAC 2 cut(s) 37, 155
BsmFI GGGAC 2 cut(s) 37, 155
BsnI GGCC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 237
Bsp143I GATC 2 cut(s) 17, 124
BspACI CCGC 2 cut(s) 252, 463
BspANI GGCC 1 cut(s) 251
BspDI ATCGAT 1 cut(s) 245
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 3 cut(s) 66, 160, 375
BspPI GGATC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 531
BsrFI RCCGGY 2 cut(s) 376, 608
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 2 cut(s) 376, 608
BssECI CCNNGG 3 cut(s) 101, 237, 285
BssMI GATC 2 cut(s) 17, 124
BssT1I CCWWGG 2 cut(s) 101, 285
Bst4CI ACNGT 2 cut(s) 342, 385
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 4 cut(s) 33, 292, 378, 529
BstEII GGTNACC 1 cut(s) 611
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 2 cut(s) 20, 127
BstMBI GATC 2 cut(s) 17, 124
BstMWI GCNNNNNNNGC 7 cut(s) 248, 257, 277, 296, 358, 409, 533
BstPI GGTNACC 1 cut(s) 611
BstSCI CCNGG 3 cut(s) 236, 237, 442
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 245
BsuRI GGCC 1 cut(s) 251
BsuTUI ATCGAT 1 cut(s) 245
BtgZI GCGATG 2 cut(s) 12, 269
BtsI GCAGTG 2 cut(s) 403, 458
BtsIMutI CAGTG 2 cut(s) 403, 458
Cac8I GCNNGC 4 cut(s) 33, 292, 378, 529
Cfr10I RCCGGY 2 cut(s) 376, 608
Cfr9I CCCGGG 1 cut(s) 237
ClaI ATCGAT 1 cut(s) 245
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 608
CviAII CATG 3 cut(s) 11, 320, 617
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 19, 126
DpnII GATC 2 cut(s) 17, 124
DrdI GACNNNNNNGTC 1 cut(s) 435
DseDI GACNNNNNNGTC 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 101, 285
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 237
Eco91I GGTNACC 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 611
EcoRI GAATTC 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 101, 285
ErhI CCWWGG 2 cut(s) 101, 285
FaeI CATG 3 cut(s) 14, 323, 620
FaiI YATR 6 cut(s) 12, 122, 153, 321, 480, 618
FaqI GGGAC 2 cut(s) 37, 155
FatI CATG 3 cut(s) 10, 319, 616
Fnu4HI GCNGC 2 cut(s) 252, 537
Fsp4HI GCNGC 2 cut(s) 252, 537
FspBI CTAG 1 cut(s) 435
GluI GCNGC 2 cut(s) 252, 537
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 1 cut(s) 251
HapII CCGG 4 cut(s) 238, 377, 443, 609
HgaI GACGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 14, 323, 620
HinfI GANTC 5 cut(s) 38, 142, 218, 301, 597
HpaII CCGG 4 cut(s) 238, 377, 443, 609
HphI GGTGA 2 cut(s) 590, 598
Hpy188I TCNGA 5 cut(s) 84, 141, 223, 450, 623
Hpy188III TCNNGA 2 cut(s) 371, 484
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 79, 221, 460, 508, 585
HpyCH4III ACNGT 2 cut(s) 342, 385
HpyCH4V TGCA 3 cut(s) 280, 396, 587
HpyF10VI GCNNNNNNNGC 7 cut(s) 248, 257, 277, 296, 358, 409, 533
Hsp92II CATG 3 cut(s) 14, 323, 620
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 2 cut(s) 17, 124
LmnI GCTCC 2 cut(s) 64, 373
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 3 cut(s) 251, 269, 514
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 611
MalI GATC 2 cut(s) 19, 126
MboI GATC 2 cut(s) 17, 124
MboII GAAGA 5 cut(s) 119, 122, 193, 431, 533
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 124
MluCI AATT 3 cut(s) 212, 305, 413
MlyI GAGTC 3 cut(s) 32, 151, 295
MmeI TCCRAC 2 cut(s) 246, 428
MnlI CCTC 2 cut(s) 172, 184
MroNI GCCGGC 1 cut(s) 376
MslI CAYNNNNRTG 2 cut(s) 150, 153
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 4 cut(s) 238, 377, 443, 609
MspR9I CCNGG 3 cut(s) 238, 239, 444
MunI CAATTG 1 cut(s) 413
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 7 cut(s) 248, 257, 277, 296, 358, 409, 533
NaeI GCCGGC 1 cut(s) 378
NciI CCSGG 3 cut(s) 238, 239, 444
NdeII GATC 2 cut(s) 17, 124
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 3 cut(s) 14, 323, 620
NlaIV GGNNCC 3 cut(s) 66, 160, 375
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 251
PdiI GCCGGC 1 cut(s) 378
PfeI GAWTC 2 cut(s) 218, 597
PinAI ACCGGT 1 cut(s) 608
PkrI GCNGC 2 cut(s) 253, 538
PleI GAGTC 3 cut(s) 32, 150, 295
PpsI GAGTC 3 cut(s) 32, 150, 295
PspEI GGTNACC 1 cut(s) 611
PspN4I GGNNCC 3 cut(s) 66, 160, 375
PsrI GAACNNNNNNTAC 2 cut(s) 347, 379
PsuI RGATCY 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 150, 153
SatI GCNGC 2 cut(s) 252, 537
Sau3AI GATC 2 cut(s) 17, 124
SchI GAGTC 3 cut(s) 32, 151, 295
ScrFI CCNGG 3 cut(s) 238, 239, 444
SetI ASST 6 cut(s) 37, 61, 186, 332, 405, 519
SfaNI GCATC 3 cut(s) 251, 269, 514
SmaI CCCGGG 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 150, 153
Sse9I AATT 3 cut(s) 212, 305, 413
SsiI CCGC 2 cut(s) 252, 463
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 3 cut(s) 236, 237, 442
StyI CCWWGG 2 cut(s) 101, 285
TaaI ACNGT 2 cut(s) 342, 385
TaqI TCGA 4 cut(s) 16, 216, 245, 427
TasI AATT 3 cut(s) 212, 305, 413
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 218, 597
TscAI CASTG 2 cut(s) 403, 465
TseI GCWGC 1 cut(s) 536
TspDTI ATGAA 2 cut(s) 123, 468
TspMI CCCGGG 1 cut(s) 237
TspRI CASTG 2 cut(s) 403, 465
XapI RAATTY 1 cut(s) 212
XmaI CCCGGG 1 cut(s) 237
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.