Rmu_sc0003335.1_g000001

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003335.1
OG0003870
Physical Location & Seq
Reverse (-)
1932 .. 3740
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
atggcggaacaagaagccgagacctcgagcggtatcagagtcagcggcatgcaattcgcgtacgacgcgcaaccgccgctcttctacgacttcagcctcaacattgctcccggatcgcggtgccttctcgtcggcgccaacggatccgggaagactactctgctgaagattttggcggggaagcaaatggtgggagggagggacgtggtgcgggtgttgaatggttcggcttttcatgacactcatttggtctgtagcggcgacttggcctatttgggaggctcctggagcaaaactgttggctgtgctggagagctgccgctccaaggagacttctctgctgaacatatgatatttggaggtggttttttttttctcatgctacagtatcccagtttaatcaggaagaaaagtaaagtggaaggaactgatccggttaggagagaaaagttgattgagctgcttgatatagatctcaagtggcgaatgcataaagtatctgatgggcagcgacgccgagtgcaaatctgcatgggacttcttcatcctttcaaggttctcttgcttgatgaggtaacagtcgacttggatgttgttgctaggatggacttattagatttcttcaaggaagaatgtgagcagagaggagctacaattgtatacgcaactcgtatctttgatggcttggaaacatgggcaacccatttagcttacatccaagatggtgagctaaagagagctcagaagttattggaggttgaagagttgaagagttcagtcaatctgctttctgttgtggagtcctggcttcgtgctgaaaccaagcaggagaaaaagaaacccaaaaatcctgcccaaacatcatctccttttggtatgtcgtcaagacacatggcgtattaccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

302

Amino Acids

33.78

Weight (kDa)

7.65

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 30 - 193 5.2e-15 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 120, 134
AccBSI CCGCTC 3 cut(s) 30, 79, 322
AccI GTMKAC 2 cut(s) 582, 660
AccII CGCG 3 cut(s) 59, 68, 118
AclWI GGATC 4 cut(s) 121, 138, 151, 425
AcuI CTGAAG 2 cut(s) 76, 185
AcyI GRCGYC 2 cut(s) 135, 514
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 117, 326
AgsI TTSAA 5 cut(s) 220, 553, 625, 761, 769
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 2 cut(s) 284, 803
AluBI AGCT 6 cut(s) 316, 460, 650, 710, 730, 740
AluI AGCT 6 cut(s) 316, 460, 650, 710, 730, 740
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 2 cut(s) 14, 324
AlwI GGATC 4 cut(s) 121, 138, 151, 425
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 3 cut(s) 316, 460, 508
AspLEI GCGC 2 cut(s) 70, 137
AsuC2I CCSGG 2 cut(s) 111, 148
AsuHPI GGTGA 1 cut(s) 737
AvaI CYCGRG 1 cut(s) 25
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 2 cut(s) 120, 134
BanII GRGCYC 1 cut(s) 742
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 3 cut(s) 303, 447, 520
BccI CCATC 4 cut(s) 497, 598, 674, 716
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 2 cut(s) 286, 805
BciVI GTATCC 1 cut(s) 399
BcnI CCSGG 2 cut(s) 111, 148
BcoDI GTCTC 2 cut(s) 14, 324
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 2 cut(s) 253, 383
BfoI RGCGCY 1 cut(s) 138
BfuI GTATCC 1 cut(s) 399
BglII AGATCT 1 cut(s) 472
BisI GCNGC 7 cut(s) 46, 77, 259, 317, 320, 461, 509
BlsI GCNGC 7 cut(s) 47, 78, 260, 318, 321, 462, 510
Bme1390I CCNGG 4 cut(s) 111, 148, 286, 805
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 122, 136, 145, 283
BmrFI CCNGG 4 cut(s) 111, 148, 286, 805
BmrI ACTGGG 1 cut(s) 387
BmuI ACTGGG 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 2 cut(s) 307, 330
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 2 cut(s) 111, 148
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 2 cut(s) 135, 514
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 325
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 850, 880
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 326
Bse1I ACTGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 2 cut(s) 286, 805
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 4 cut(s) 544, 595, 609, 714
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 117, 326
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 755
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 660
BseXI GCAGC 3 cut(s) 303, 447, 520
Bsh1236I CGCG 3 cut(s) 59, 68, 118
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 2 cut(s) 120, 134
BsiHKAI GWGCWC 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 3 cut(s) 111, 147, 434
BsiWI CGTACG 1 cut(s) 60
BslFI GGGAC 2 cut(s) 215, 549
BslI CCNNNNNNNGG 2 cut(s) 117, 326
BsmAI GTCTC 2 cut(s) 14, 324
BsmFI GGGAC 2 cut(s) 215, 549
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 742
Bsp143I GATC 4 cut(s) 113, 143, 430, 472
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 754
BspFNI CGCG 3 cut(s) 59, 68, 118
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 4 cut(s) 122, 136, 145, 283
BspPI GGATC 4 cut(s) 121, 138, 151, 425
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 2 cut(s) 120, 134
BspTNI GGTCTC 1 cut(s) 14
BsrBI CCGCTC 3 cut(s) 30, 79, 322
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 4 cut(s) 113, 143, 430, 472
BssNAI GTATAC 1 cut(s) 661
BssNI GRCGYC 2 cut(s) 135, 514
BssT1I CCWWGG 1 cut(s) 325
Bst1107I GTATAC 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 286, 805
Bst4CI ACNGT 3 cut(s) 298, 387, 580
Bst6I CTCTTC 3 cut(s) 86, 756, 764
BstACI GRCGYC 2 cut(s) 135, 514
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 741
BstF5I GGATG 4 cut(s) 544, 595, 609, 714
BstFNI CGCG 3 cut(s) 59, 68, 118
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 70, 137
BstKTI GATC 4 cut(s) 116, 146, 433, 475
BstMAI GTCTC 2 cut(s) 14, 324
BstMBI GATC 4 cut(s) 113, 143, 430, 472
BstMWI GCNNNNNNNGC 3 cut(s) 65, 76, 288
BstNI CCWGG 2 cut(s) 286, 805
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 4 cut(s) 109, 146, 284, 803
BstSFI CTRYAG 2 cut(s) 253, 383
BstUI CGCG 3 cut(s) 59, 68, 118
BstV1I GCAGC 3 cut(s) 303, 447, 520
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 143, 472
BstYI RGATCY 2 cut(s) 143, 472
BstZ17I GTATAC 1 cut(s) 661
BsuI GTATCC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 269
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 4 cut(s) 544, 595, 609, 714
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 235
CfoI GCGC 2 cut(s) 70, 137
CseI GACGC 2 cut(s) 74, 522
Csp6I GTAC 1 cut(s) 61
CviAII CATG 6 cut(s) 49, 236, 379, 532, 693, 892
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 741
DinI GGCGCC 1 cut(s) 136
DpnI GATC 4 cut(s) 115, 145, 432, 474
DpnII GATC 4 cut(s) 113, 143, 430, 472
Eam1104I CTCTTC 3 cut(s) 86, 756, 764
EarI CTCTTC 3 cut(s) 86, 756, 764
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 740
Eco130I CCWWGG 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 742
Eco31I GGTCTC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 740
Eco57I CTGAAG 2 cut(s) 76, 185
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 740
EcoRII CCWGG 2 cut(s) 284, 803
EcoT14I CCWWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 492
EcoT38I GRGCYC 1 cut(s) 742
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 6 cut(s) 52, 239, 382, 535, 696, 895
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 2 cut(s) 215, 549
FatI CATG 6 cut(s) 48, 235, 378, 531, 692, 891
FauI CCCGC 2 cut(s) 169, 204
FauNDI CATATG 1 cut(s) 348
FblI GTMKAC 2 cut(s) 582, 660
Fnu4HI GCNGC 7 cut(s) 46, 77, 259, 317, 320, 461, 509
FokI GGATG 4 cut(s) 531, 602, 616, 701
FriOI GRGCYC 1 cut(s) 742
Fsp4HI GCNGC 7 cut(s) 46, 77, 259, 317, 320, 461, 509
FspBI CTAG 1 cut(s) 600
GlaI GCGC 2 cut(s) 69, 136
GluI GCNGC 7 cut(s) 46, 77, 259, 317, 320, 461, 509
GsuI CTGGAG 2 cut(s) 307, 330
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 269
HapII CCGG 3 cut(s) 111, 147, 434
HgaI GACGC 2 cut(s) 74, 522
HhaI GCGC 2 cut(s) 70, 137
Hin1I GRCGYC 2 cut(s) 135, 514
Hin1II CATG 6 cut(s) 52, 239, 382, 535, 696, 895
Hin6I GCGC 2 cut(s) 68, 135
HinP1I GCGC 2 cut(s) 68, 135
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 2 cut(s) 39, 800
HpaII CCGG 3 cut(s) 111, 147, 434
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 2 cut(s) 583, 661
Hpy188I TCNGA 3 cut(s) 38, 502, 744
Hpy188III TCNNGA 3 cut(s) 236, 403, 885
Hpy8I GTNNAC 2 cut(s) 583, 661
Hpy99I CGWCG 3 cut(s) 68, 134, 516
HpyAV CCTTC 2 cut(s) 134, 416
HpyCH4III ACNGT 3 cut(s) 298, 387, 580
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 52, 490, 523, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 76, 288
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 2 cut(s) 135, 514
Hsp92II CATG 6 cut(s) 52, 239, 382, 535, 696, 895
HspAI GCGC 2 cut(s) 68, 135
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 113, 143, 430, 472
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 5 cut(s) 112, 287, 288, 327, 647
Lsp1109I GCAGC 3 cut(s) 303, 447, 520
MaeI CTAG 1 cut(s) 600
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 574
MalI GATC 4 cut(s) 115, 145, 432, 474
MbiI CCGCTC 3 cut(s) 30, 79, 322
MboI GATC 4 cut(s) 113, 143, 430, 472
MboII GAAGA 9 cut(s) 73, 163, 178, 418, 533, 613, 641, 773, 781
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 2 cut(s) 143, 472
MhlI GDGCHC 1 cut(s) 742
MluCI AATT 2 cut(s) 53, 654
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 2 cut(s) 48, 809
MnlI CCTC 9 cut(s) 34, 107, 188, 192, 272, 353, 565, 638, 748
Mph1103I ATGCAT 1 cut(s) 492
MseI TTAA 1 cut(s) 398
MspA1I CMGCKG 2 cut(s) 45, 906
MspI CCGG 3 cut(s) 111, 147, 434
MspR9I CCNGG 4 cut(s) 111, 148, 286, 805
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 2 cut(s) 286, 805
MvnI CGCG 3 cut(s) 59, 68, 118
MwoI GCNNNNNNNGC 3 cut(s) 65, 76, 288
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 111, 148
NdeI CATATG 1 cut(s) 348
NdeII GATC 4 cut(s) 113, 143, 430, 472
NlaIII CATG 6 cut(s) 52, 239, 382, 535, 696, 895
NlaIV GGNNCC 4 cut(s) 122, 136, 145, 283
NmeAIII GCCGAG 2 cut(s) 43, 542
NsiI ATGCAT 1 cut(s) 492
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 25
PagI TCATGA 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 86
PctI GAATGC 1 cut(s) 492
Pfl23II CGTACG 1 cut(s) 60
PfoI TCCNGGA 3 cut(s) 109, 146, 284
PkrI GCNGC 7 cut(s) 47, 78, 260, 318, 321, 462, 510
PleI GAGTC 2 cut(s) 47, 808
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 2 cut(s) 47, 808
Psp124BI GAGCTC 1 cut(s) 742
Psp6I CCWGG 2 cut(s) 284, 803
PspGI CCWGG 2 cut(s) 284, 803
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 122, 136, 145, 283
PspXI VCTCGAGB 1 cut(s) 25
PsuI RGATCY 2 cut(s) 143, 472
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 742
SalI GTCGAC 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 7 cut(s) 46, 77, 259, 317, 320, 461, 509
Sau3AI GATC 4 cut(s) 113, 143, 430, 472
SchI GAGTC 2 cut(s) 48, 809
ScrFI CCNGG 4 cut(s) 111, 148, 286, 805
SduI GDGCHC 1 cut(s) 742
SfcI CTRYAG 2 cut(s) 253, 383
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 2 cut(s) 25, 476
SmoI CTYRAG 2 cut(s) 25, 476
SphI GCATGC 1 cut(s) 52
Sse9I AATT 2 cut(s) 53, 654
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 1 cut(s) 600
SstI GAGCTC 1 cut(s) 742
StyD4I CCNGG 4 cut(s) 109, 146, 284, 803
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 298, 387, 580
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 26, 582
TasI AATT 2 cut(s) 53, 654
TauI GCSGC 4 cut(s) 48, 79, 261, 322
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TseI GCWGC 3 cut(s) 316, 460, 508
TspDTI ATGAA 2 cut(s) 224, 533
TspGWI ACGGA 1 cut(s) 156
XceI RCATGY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 25
XmiI GTMKAC 2 cut(s) 582, 660
XspI CTAG 1 cut(s) 600
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.