Rmu_sc0003363.1_g000014

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003363.1
OG0004963
Physical Location & Seq
Reverse (-)
65754 .. 66236
483 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
atggccggcctcgacgccgacagcttccggttctcgccgctcccgccgccgaaacccttctcgattcgaaccccgaaaaccgcggataaagagaactccaacccgaaccggtctgttttagtcaaaggcccgctcgaccggtttgagagtatatgcgcgccggggggagagaacaaactagtgctgtatacgacgtcattgcggggagtacggaagactttagaggcgtgcaatgtcgtccgggcggcgatggagtatctcggcgtgatggtctgcgagcgtgacgtgtcgatggatcgcggatttcaagaagagctgaatgacttgatggaggggaaaggcagagacgcggtggtgccgccgaggttgtttgtgaagggaagatatgtgggtggatctgaggaggtgttgaagattgtggaggaggggttgttgggcactaccagaaaaatggtcttttacggcccacaaagaacgccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

160

Amino Acids

17.71

Weight (kDa)

8.8

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 61 - 130 2.2e-07 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 355
AccBSI CCGCTC 2 cut(s) 40, 133
AccI GTMKAC 1 cut(s) 188
AccII CGCG 4 cut(s) 83, 158, 300, 350
AclWI GGATC 2 cut(s) 303, 403
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 15, 194
AfaI GTAC 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 285
AgeI ACCGGT 2 cut(s) 108, 138
AgsI TTSAA 2 cut(s) 308, 412
AhlI ACTAGT 1 cut(s) 178
AjiI CACGTC 1 cut(s) 286
AluBI AGCT 2 cut(s) 24, 316
AluI AGCT 2 cut(s) 24, 316
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 2 cut(s) 303, 403
AoxI GGCC 4 cut(s) 3, 7, 127, 463
AsiGI ACCGGT 2 cut(s) 108, 138
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 2 cut(s) 158, 160
AspS9I GGNCC 2 cut(s) 128, 464
AsuC2I CCSGG 2 cut(s) 162, 242
AsuII TTCGAA 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 440
BanI GGYRCC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 221
BccI CCATC 4 cut(s) 244, 262, 286, 322
BceAI ACGGC 2 cut(s) 463, 478
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BcnI CCSGG 2 cut(s) 162, 242
BcoDI GTCTC 1 cut(s) 339
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 1 cut(s) 179
BisI GCNGC 4 cut(s) 38, 47, 246, 359
BlsI GCNGC 4 cut(s) 39, 48, 247, 360
Bme1390I CCNGG 2 cut(s) 162, 242
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 128, 464
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 162, 242
BpiI GAAGAC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 162, 242
BsaHI GRCGYC 2 cut(s) 15, 194
BsaJI CCNNGG 3 cut(s) 81, 161, 362
BsaWI WCCGGW 3 cut(s) 27, 108, 138
BsaXI ACNNNNNCTCC 4 cut(s) 413, 416, 443, 446
Bse118I RCCGGY 3 cut(s) 5, 108, 138
Bse3DI GCAATG 2 cut(s) 197, 238
BseDI CCNNGG 3 cut(s) 81, 161, 362
BseMI GCAATG 2 cut(s) 197, 238
BseMII CTCAG 1 cut(s) 390
BsePI GCGCGC 1 cut(s) 156
BseRI GAGGAG 2 cut(s) 416, 437
BseSI GKGCMC 1 cut(s) 440
Bsh1236I CGCG 4 cut(s) 83, 158, 300, 350
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 4 cut(s) 5, 9, 129, 465
BshNI GGYRCC 1 cut(s) 355
BshTI ACCGGT 2 cut(s) 108, 138
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 6 cut(s) 6, 28, 109, 139, 161, 241
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsnI GGCC 4 cut(s) 5, 9, 129, 465
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 2 cut(s) 295, 395
BspANI GGCC 4 cut(s) 5, 9, 129, 465
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 4 cut(s) 83, 158, 300, 350
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 2 cut(s) 303, 403
BspQI GCTCTTC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 355
BsrBI CCGCTC 2 cut(s) 40, 133
BsrDI GCAATG 2 cut(s) 197, 238
BsrFI RCCGGY 3 cut(s) 5, 108, 138
BssAI RCCGGY 3 cut(s) 5, 108, 138
BssECI CCNNGG 3 cut(s) 81, 161, 362
BssHII GCGCGC 1 cut(s) 156
BssMI GATC 2 cut(s) 295, 395
BssNAI GTATAC 1 cut(s) 189
BssNI GRCGYC 2 cut(s) 15, 194
Bst1107I GTATAC 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 2 cut(s) 15, 194
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 5 cut(s) 7, 131, 158, 229, 278
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 81
BstFNI CGCG 4 cut(s) 83, 158, 300, 350
BstHHI GCGC 2 cut(s) 158, 160
BstKTI GATC 2 cut(s) 298, 398
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 295, 395
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 43, 46
BstSCI CCNGG 2 cut(s) 160, 240
BstSLI GKGCMC 1 cut(s) 440
BstUI CGCG 4 cut(s) 83, 158, 300, 350
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 1 cut(s) 395
BstZ17I GTATAC 1 cut(s) 189
BsuRI GGCC 4 cut(s) 5, 9, 129, 465
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 286
Cac8I GCNNGC 5 cut(s) 7, 131, 158, 229, 278
CfoI GCGC 2 cut(s) 158, 160
Cfr10I RCCGGY 3 cut(s) 5, 108, 138
Cfr13I GGNCC 2 cut(s) 128, 464
Cfr42I CCGCGG 1 cut(s) 84
CseI GACGC 2 cut(s) 23, 356
Csp6I GTAC 1 cut(s) 209
CspAI ACCGGT 2 cut(s) 108, 138
CviJI RGCY 6 cut(s) 5, 9, 24, 129, 316, 465
CviKI_1 RGCY 6 cut(s) 5, 9, 24, 129, 316, 465
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 297, 397
DpnII GATC 2 cut(s) 295, 395
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 339
FaiI YATR 4 cut(s) 152, 154, 189, 387
FauI CCCGC 3 cut(s) 51, 138, 195
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 4 cut(s) 38, 47, 246, 359
FseI GGCCGGCC 1 cut(s) 9
Fsp4HI GCNGC 4 cut(s) 38, 47, 246, 359
FspBI CTAG 1 cut(s) 179
GlaI GCGC 2 cut(s) 157, 159
GluI GCNGC 4 cut(s) 38, 47, 246, 359
HaeIII GGCC 4 cut(s) 5, 9, 129, 465
HapII CCGG 6 cut(s) 6, 28, 109, 139, 161, 241
HgaI GACGC 2 cut(s) 23, 356
HhaI GCGC 2 cut(s) 158, 160
Hin1I GRCGYC 2 cut(s) 15, 194
Hin6I GCGC 2 cut(s) 156, 158
HinP1I GCGC 2 cut(s) 156, 158
HinfI GANTC 1 cut(s) 64
HpaII CCGG 6 cut(s) 6, 28, 109, 139, 161, 241
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 61, 308
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 2 cut(s) 17, 196
HpyAV CCTTC 2 cut(s) 67, 370
HpyCH4IV ACGT 2 cut(s) 194, 285
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 46
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 194, 285
Hsp92I GRCGYC 2 cut(s) 15, 194
HspAI GCGC 2 cut(s) 156, 158
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
KspI CCGCGG 1 cut(s) 84
Kzo9I GATC 2 cut(s) 295, 395
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 19, 41, 122, 152, 174, 254, 457
MaeI CTAG 1 cut(s) 179
MaeII ACGT 2 cut(s) 194, 285
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 297, 397
MbiI CCGCTC 2 cut(s) 40, 133
MboI GATC 2 cut(s) 295, 395
MboII GAAGA 4 cut(s) 226, 323, 393, 424
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 8 cut(s) 20, 217, 325, 357, 394, 397, 415, 418
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 6 cut(s) 6, 28, 109, 139, 161, 241
MspR9I CCNGG 2 cut(s) 162, 242
MvnI CGCG 4 cut(s) 83, 158, 300, 350
MwoI GCNNNNNNNGC 2 cut(s) 43, 46
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 2 cut(s) 162, 242
NdeII GATC 2 cut(s) 295, 395
NgoMIV GCCGGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 357
NmeAIII GCCGAG 2 cut(s) 240, 387
NmuCI GTSAC 1 cut(s) 281
NspV TTCGAA 1 cut(s) 67
PauI GCGCGC 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 306
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 64
PinAI ACCGGT 2 cut(s) 108, 138
PkrI GCNGC 4 cut(s) 39, 48, 247, 360
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 2 cut(s) 128, 464
PsuI RGATCY 1 cut(s) 395
PteI GCGCGC 1 cut(s) 156
RigI GGCCGGCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SacII CCGCGG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 4 cut(s) 38, 47, 246, 359
Sau3AI GATC 2 cut(s) 295, 395
Sau96I GGNCC 2 cut(s) 128, 464
ScrFI CCNGG 2 cut(s) 162, 242
SduI GDGCHC 1 cut(s) 440
SetI ASST 6 cut(s) 26, 197, 288, 318, 368, 408
Sfr303I CCGCGG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 67
SgrBI CCGCGG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 178
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 160, 240
TaiI ACGT 2 cut(s) 197, 288
TaqI TCGA 5 cut(s) 12, 62, 67, 135, 290
TauI GCSGC 4 cut(s) 40, 49, 248, 361
TfiI GAWTC 1 cut(s) 64
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 179
ZraI GACGTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.