Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003539.1

Orthogroup ID

OG0007552

Physical Location & Seq

Genomic Coordinates Forward (+)

28534 .. 33362

Gene Structure 4829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtcgtcgctagccaagtcttctctcacctcctcctccactcgtaggtccgcctaccccaacttccttgctaacctgcgtgcatttgcacgcaccccattcctcgctgccgtgtcaaatccccgcaagctgttaccgcagatgcagatccttgtcgatgtgggtaagctggttggcgtcggtgaggcatctttgataagtcttgcagctccgttcattgatgaccatgcccctgcagatcagctggcgcttactctgaacacttcaagtgccgccgctgcggctgccatagtctacttggcccacaatgggaactccgatgcaaattggcttgctatctgccaacagttcggtgatttctgccggcaatctagcggggctgtggtttcagcattcgttgcagttgttatcttcactgtgttgattatgccgtctgctagtgccctccgaagagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

152

Amino Acids

15.9

Weight (kDa)

9.58

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	79 - 136	4.1e-18	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007552)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420261 RchiOBHm_Chr4g0420281
rosa_laevigata	RLG00000008411 RLG00000009409
rosa_multiflora	Rmu_sc0001009.1_g000027 Rmu_sc0003539.1_g000009
rosa_roxburghii	Rroxscaffold_5G00362910 Rroxscaffold_6G00399630
rosa_rugosa	Rorug04G0161700
rosa_samantha	Rh1AG127300 Rh1CG121200 Rh2AG194800 Rh2BG274300 Rh2BG558800 Rh2CG315200 Rh2CG528700 Rh2DG202300 Rh4AG223700 Rh4BG226500 Rh4CG233600 Rh4CG237100 Rh4CG237400 Rh4CG237900 Rh5AG169700 Rh7CG456900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	7 cut(s)	51, 124, 137, 273, 276, 281, 375
AclWI	GGATC	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	45, 309
AgsI	TTSAA	1 cut(s)	267
AluBI	AGCT	5 cut(s)	130, 169, 209, 244, 455
AluI	AGCT	5 cut(s)	130, 169, 209, 244, 455
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	4 cut(s)	107, 206, 278, 284
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	48, 301
AsuHPI	GGTGA	3 cut(s)	19, 194, 365
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	94, 218, 265, 271
BceAI	ACGGC	2 cut(s)	95, 415
BfaI	CTAG	3 cut(s)	11, 372, 438
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	7 cut(s)	108, 207, 273, 276, 279, 282, 285
BlsI	GCNGC	7 cut(s)	109, 208, 274, 277, 280, 283, 286
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	48, 301
BmsI	GCATC	3 cut(s)	132, 197, 310
BmtI	GCTAGC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 309
Bse118I	RCCGGY	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	45, 309
BseRI	GAGGAG	2 cut(s)	22, 25
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	4 cut(s)	94, 218, 265, 271
BshFI	GGCC	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	45, 309
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	147, 238
BspACI	CCGC	7 cut(s)	51, 124, 137, 273, 276, 281, 375
BspANI	GGCC	1 cut(s)	302
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	84
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	363
BssMI	GATC	2 cut(s)	147, 238
BssNI	GRCGYC	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	348, 418
Bst6I	CTCTTC	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	7 cut(s)	12, 81, 91, 128, 246, 333, 365
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	150, 241
BstMBI	GATC	2 cut(s)	147, 238
BstMWI	GCNNNNNNNGC	5 cut(s)	136, 278, 281, 284, 398
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	4 cut(s)	94, 218, 265, 271
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	7 cut(s)	12, 81, 91, 128, 246, 333, 365
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	2 cut(s)	48, 301
CseI	GACGC	1 cut(s)	166
CviAII	CATG	1 cut(s)	227
DpnI	GATC	2 cut(s)	149, 240
DpnII	GATC	2 cut(s)	147, 238
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
EciI	GGCGGA	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	48
FaeI	CATG	1 cut(s)	230
FaiI	YATR	3 cut(s)	228, 290, 428
FatI	CATG	1 cut(s)	226
FauI	CCCGC	2 cut(s)	131, 368
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	7 cut(s)	108, 207, 273, 276, 279, 282, 285
Fsp4HI	GCNGC	7 cut(s)	108, 207, 273, 276, 279, 282, 285
FspBI	CTAG	3 cut(s)	11, 372, 438
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	7 cut(s)	108, 207, 273, 276, 279, 282, 285
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	3 cut(s)	19, 194, 365
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	258, 319, 449
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	2 cut(s)	10, 182
HpyCH4III	ACNGT	2 cut(s)	348, 418
HpyCH4V	TGCA	7 cut(s)	83, 89, 145, 206, 236, 323, 401
HpyF10VI	GCNNNNNNNGC	5 cut(s)	136, 278, 281, 284, 398
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	363
KroNI	GCCGGC	1 cut(s)	365
Kzo9I	GATC	2 cut(s)	147, 238
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	5 cut(s)	89, 155, 230, 246, 377
Lsp1109I	GCAGC	4 cut(s)	94, 218, 265, 271
LweI	GCATC	3 cut(s)	132, 197, 310
MaeI	CTAG	3 cut(s)	11, 372, 438
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	2 cut(s)	149, 240
MboI	GATC	2 cut(s)	147, 238
MboII	GAAGA	2 cut(s)	12, 403
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	1 cut(s)	325
MnlI	CCTC	6 cut(s)	40, 43, 46, 113, 178, 455
MroNI	GCCGGC	1 cut(s)	363
MseI	TTAA	1 cut(s)	457
MspA1I	CMGCKG	2 cut(s)	244, 278
MspI	CCGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	136, 278, 281, 284, 398
NaeI	GCCGGC	1 cut(s)	365
NdeII	GATC	2 cut(s)	147, 238
NgoMIV	GCCGGC	1 cut(s)	363
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	445
PctI	GAATGC	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	365
PkrI	GCNGC	7 cut(s)	109, 208, 274, 277, 280, 283, 286
PspPI	GGNCC	2 cut(s)	48, 301
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	7 cut(s)	108, 207, 273, 276, 279, 282, 285
Sau3AI	GATC	2 cut(s)	147, 238
Sau96I	GGNCC	2 cut(s)	48, 301
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	8 cut(s)	32, 50, 78, 132, 171, 211, 246, 457
SfaNI	GCATC	3 cut(s)	132, 197, 310
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	48
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	7 cut(s)	51, 124, 137, 273, 276, 281, 375
SspMI	CTAG	3 cut(s)	11, 372, 438
TaaI	ACNGT	2 cut(s)	348, 418
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	325
TauI	GCSGC	3 cut(s)	275, 278, 284
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	4 cut(s)	107, 206, 278, 284
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	3 cut(s)	11, 372, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.