Rmu_sc0003667.1_g000009

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003667.1
OG0003870
Physical Location & Seq
Forward (+)
21039 .. 23312
2274 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
atgaatgaatcacagaaagatatcctagtgtggaaaaatatccttgtgtggaaagatctccttgccaagcctcatgagtggtgggacgtcaggtcgaaagagggttccccaaaggctgcagcctttgagcgtaagagtaatggcgaattacgtatgattgatgattcaactcctgaatggatccaacataagttagattccttgacatttgatcagaaacctaattcacatagttccgaaatggaaggaactgatccggttaggagagaaaagttgattgagctgcttgatatagatctcaagtggcgaatgcataaagtatctgatgggcagcgacgccgagtgcaaatctgcatgggacttcttcatcctttcaaggttctcttgcttgatgaggtaacagtcgacttggatgttgttgctaggatggacttattagatttcttcaaggaagaatgtgagcagagaggagctacaattgtatacgcaactcatatctttgatggcttggaaacatgggcaacccatttagcttacatccaagatggtgagctaaagagagctcagaagttattggaggttgaagagttgaagagttcagtcaatctgctatctgttgtcgagtcctggcttcgtgctgaaaccatgcaggagaaaaagaaacccaaaaatcctgcccaaacgtcatctccttttggtatgtcgtcaagacacatggcgtattaccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

243

Amino Acids

28.36

Weight (kDa)

6.1

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_21 PF13304 98 - 165 3.6e-07 AAA domain, putative AbiEii toxin, Type IV TA system
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccI GTMKAC 2 cut(s) 405, 483
AciI CCGC 1 cut(s) 727
AclWI GGATC 3 cut(s) 175, 188, 248
AcyI GRCGYC 2 cut(s) 87, 337
AgsI TTSAA 5 cut(s) 168, 376, 448, 584, 592
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 626
AluBI AGCT 5 cut(s) 283, 473, 533, 553, 563
AluI AGCT 5 cut(s) 283, 473, 533, 553, 563
Alw21I GWGCWC 1 cut(s) 565
AlwI GGATC 3 cut(s) 175, 188, 248
ApeKI GCWGC 4 cut(s) 116, 119, 283, 331
AsuHPI GGTGA 1 cut(s) 560
BamHI GGATCC 1 cut(s) 180
BanII GRGCYC 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 4 cut(s) 103, 131, 270, 343
BccI CCATC 4 cut(s) 320, 421, 497, 539
BciT130I CCWGG 1 cut(s) 628
BclI TGATCA 1 cut(s) 211
BfaI CTAG 2 cut(s) 26, 423
BfmI CTRYAG 1 cut(s) 117
BglII AGATCT 2 cut(s) 55, 295
BisI GCNGC 4 cut(s) 117, 120, 284, 332
BlsI GCNGC 4 cut(s) 118, 121, 285, 333
Bme1390I CCNGG 1 cut(s) 628
BmeRI GACNNNNNGTC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 106, 182
BmrFI CCNGG 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 2 cut(s) 87, 337
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 673, 703
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 628
BseGI GGATG 4 cut(s) 367, 418, 432, 537
BseJI GATNNNNATC 1 cut(s) 294
BseMII CTCAG 1 cut(s) 578
BseRI GAGGAG 1 cut(s) 483
BseXI GCAGC 4 cut(s) 103, 131, 270, 343
BsiHKAI GWGCWC 1 cut(s) 565
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 98, 372
BsmFI GGGAC 2 cut(s) 98, 372
BsmI GAATGC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 5 cut(s) 55, 180, 211, 253, 295
BspACI CCGC 1 cut(s) 727
BspCNI CTCAG 1 cut(s) 577
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 106, 182
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 3 cut(s) 175, 188, 248
BssMI GATC 5 cut(s) 55, 180, 211, 253, 295
BssNAI GTATAC 1 cut(s) 484
BssNI GRCGYC 2 cut(s) 87, 337
Bst1107I GTATAC 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 2 cut(s) 579, 587
BstACI GRCGYC 2 cut(s) 87, 337
BstBAI YACGTR 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 564
BstF5I GGATG 4 cut(s) 367, 418, 432, 537
BstKTI GATC 5 cut(s) 58, 183, 214, 256, 298
BstMBI GATC 5 cut(s) 55, 180, 211, 253, 295
BstNI CCWGG 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 626
BstSFI CTRYAG 1 cut(s) 117
BstSNI TACGTA 1 cut(s) 152
BstV1I GCAGC 4 cut(s) 103, 131, 270, 343
BstX2I RGATCY 3 cut(s) 55, 180, 295
BstYI RGATCY 3 cut(s) 55, 180, 295
BstZ17I GTATAC 1 cut(s) 484
BtsCI GGATG 4 cut(s) 367, 418, 432, 537
CciI TCATGA 1 cut(s) 73
CseI GACGC 1 cut(s) 345
CviAII CATG 5 cut(s) 74, 355, 516, 646, 715
DdeI CTNAG 1 cut(s) 564
DpnI GATC 5 cut(s) 57, 182, 213, 255, 297
DpnII GATC 5 cut(s) 55, 180, 211, 253, 295
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 579, 587
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 2 cut(s) 579, 587
Ecl136II GAGCTC 1 cut(s) 563
Eco105I TACGTA 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 565
Eco32I GATATC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 563
EcoICRI GAGCTC 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 626
EcoRV GATATC 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 565
FaeI CATG 5 cut(s) 77, 358, 519, 649, 718
FalI AAGNNNNNCTT 4 cut(s) 45, 77, 368, 400
FaqI GGGAC 2 cut(s) 98, 372
FatI CATG 5 cut(s) 73, 354, 515, 645, 714
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 2 cut(s) 405, 483
Fnu4HI GCNGC 4 cut(s) 117, 120, 284, 332
FokI GGATG 4 cut(s) 354, 425, 439, 524
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 4 cut(s) 117, 120, 284, 332
FspBI CTAG 2 cut(s) 26, 423
GluI GCNGC 4 cut(s) 117, 120, 284, 332
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 345
Hin1I GRCGYC 2 cut(s) 87, 337
Hin1II CATG 5 cut(s) 77, 358, 519, 649, 718
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 4 cut(s) 8, 164, 197, 623
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 2 cut(s) 406, 484
Hpy188I TCNGA 4 cut(s) 216, 238, 325, 567
Hpy188III TCNNGA 3 cut(s) 74, 173, 708
Hpy8I GTNNAC 2 cut(s) 406, 484
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 3 cut(s) 87, 151, 683
HpyCH4V TGCA 5 cut(s) 119, 313, 346, 354, 649
HpyF3I CTNAG 1 cut(s) 564
HpySE526I ACGT 3 cut(s) 87, 151, 683
Hsp92I GRCGYC 2 cut(s) 87, 337
Hsp92II CATG 5 cut(s) 77, 358, 519, 649, 718
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 5 cut(s) 55, 180, 211, 253, 295
LmnI GCTCC 1 cut(s) 470
LpnPI CCDG 7 cut(s) 76, 186, 270, 613, 635, 640, 687
Lsp1109I GCAGC 4 cut(s) 103, 131, 270, 343
MaeI CTAG 2 cut(s) 26, 423
MaeII ACGT 3 cut(s) 87, 151, 683
MaeIII GTNAC 1 cut(s) 397
MalI GATC 5 cut(s) 57, 182, 213, 255, 297
MboI GATC 5 cut(s) 55, 180, 211, 253, 295
MboII GAAGA 5 cut(s) 356, 436, 464, 596, 604
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 3 cut(s) 55, 180, 295
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 3 cut(s) 146, 223, 477
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 5 cut(s) 81, 94, 388, 461, 571
Mph1103I ATGCAT 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 729
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 628
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 1 cut(s) 628
NdeII GATC 5 cut(s) 55, 180, 211, 253, 295
NlaIII CATG 5 cut(s) 77, 358, 519, 649, 718
NlaIV GGNNCC 2 cut(s) 106, 182
NmeAIII GCCGAG 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 315
PagI TCATGA 1 cut(s) 73
PctI GAATGC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 8, 164, 197
PkrI GCNGC 4 cut(s) 118, 121, 285, 333
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
Ppu21I YACGTR 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 626
PspGI CCWGG 1 cut(s) 626
PspN4I GGNNCC 2 cut(s) 106, 182
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 3 cut(s) 55, 180, 295
SacI GAGCTC 1 cut(s) 565
SalI GTCGAC 1 cut(s) 404
SatI GCNGC 4 cut(s) 117, 120, 284, 332
Sau3AI GATC 5 cut(s) 55, 180, 211, 253, 295
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 1 cut(s) 628
SduI GDGCHC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 152
Sse9I AATT 3 cut(s) 146, 223, 477
SsiI CCGC 1 cut(s) 727
SspMI CTAG 2 cut(s) 26, 423
SstI GAGCTC 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 626
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 3 cut(s) 90, 154, 686
TaqI TCGA 3 cut(s) 95, 405, 621
TasI AATT 3 cut(s) 146, 223, 477
TfiI GAWTC 3 cut(s) 8, 164, 197
TseI GCWGC 4 cut(s) 116, 119, 283, 331
TspDTI ATGAA 3 cut(s) 17, 21, 356
XmiI GTMKAC 2 cut(s) 405, 483
XspI CTAG 2 cut(s) 26, 423
ZraI GACGTC 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.