Rmu_sc0004659.1_g000003

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004659.1
OG0004459
Physical Location & Seq
Forward (+)
6380 .. 9427
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
atgcaaggtacatccagctttagtctaacattgctaacaaggcttgtatttgcgagtcgtttgaggactggcaattctaaaggcagttcagccttggatccacattccgcatatatactggtggttaaactgaagactccactaaaagctgaaaaccccgtgggctgctctctgaaggaggcttttgagctccttggaccaaaactaagacccccattggcaataacaatcccaacctcacaggaatacttgctgctcaacaaggctattttgtatggagttctatgcgaaacccattttgccaagacacatattaagcatttacatgccattgtcaccgatgggtatggcttgtttgctagtttgattgctaaggttgtgaatgaattgtacacgaaacttgttgactcggtgaaatgccagttgatttgggttactaaggagatgattgatgttcaggctgtaggcatccatggtttgttggtttgttttctgaggcaaattgttggtggggattttagtgatggaaatttttggttgtgttttgagaccgtgagcatttttttgaccaaatgggattctctcttggaagtagaaccaatgattttgaccagtggattgtatacatatcttgcgctactagctgatcactatagattgctaagtaatccaaagttggaagcgttaaagcaattggaaattgatttctgcattaaagagttaagggagcagttttctgtctgtttaaacattgggagggatcttgttcggctcctacaagatgtggttcatataccaaactttagagctatgtggaaagatctggtattgaatcaaggcaagtttaagactcctggtttttctgttatttcgcagctctataacacaaggacttcaagtcagtatattttacttcggatttcaccagaaatggagacacagttgcgatttttacttacttgcgtgaagttaggcagtcaaaagcgttaccaggcatggctggaacaaactagatatcccagcccctttgctttggagaattcctcttgtatgggaactccaactccatcaccagaacagcagtctaaatgtagccaaggcgataggttttctgccaaatcagctgatacttctgttgggataataggtgatgcagcgtcttgtagtccattcacatgggagcggcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

396

Amino Acids

44.42

Weight (kDa)

8.66

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 82 - 336 8.1e-80 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1183
AccI GTMKAC 1 cut(s) 623
AciI CCGC 2 cut(s) 108, 1183
AclWI GGATC 3 cut(s) 92, 105, 768
AcsI RAATTY 2 cut(s) 529, 1039
AcuI CTGAAG 2 cut(s) 152, 194
AfaI GTAC 2 cut(s) 10, 392
AgsI TTSAA 2 cut(s) 832, 897
AhdI GACNNNNNGTC 1 cut(s) 897
AjnI CCWGG 2 cut(s) 853, 990
AloI GAACNNNNNNTCC 2 cut(s) 1048, 1080
AluBI AGCT 7 cut(s) 18, 149, 190, 644, 809, 877, 1124
AluI AGCT 7 cut(s) 18, 149, 190, 644, 809, 877, 1124
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 542, 929
AlwI GGATC 3 cut(s) 92, 105, 768
ApeKI GCWGC 4 cut(s) 165, 253, 874, 1154
ApoI RAATTY 2 cut(s) 529, 1039
AspLEI GCGC 1 cut(s) 637
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 5 cut(s) 328, 424, 915, 1062, 1160
AvaII GGWCC 1 cut(s) 197
BaeI ACNNNNGTAYC 2 cut(s) 1119, 1152
BamHI GGATCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 4 cut(s) 152, 240, 886, 1166
BccI CCATC 3 cut(s) 335, 518, 1075
BciT130I CCWGG 2 cut(s) 855, 992
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 542, 929
BfaI CTAG 3 cut(s) 360, 641, 1011
BfmI CTRYAG 2 cut(s) 462, 652
BglII AGATCT 1 cut(s) 820
BisI GCNGC 5 cut(s) 166, 254, 875, 1155, 1184
BlsI GCNGC 5 cut(s) 167, 255, 876, 1156, 1185
Bme1390I CCNGG 2 cut(s) 855, 992
Bme18I GGWCC 1 cut(s) 197
BmeRI GACNNNNNGTC 1 cut(s) 897
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 99, 773
BmrFI CCNGG 2 cut(s) 855, 992
BmsI GCATC 2 cut(s) 477, 1141
BpiI GAAGAC 1 cut(s) 140
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
Bpu10I CCTNAGC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 5 cut(s) 93, 159, 193, 472, 1096
BsaXI ACNNNNNCTCC 4 cut(s) 926, 956, 1048, 1078
Bse1I ACTGG 4 cut(s) 73, 123, 421, 612
Bse3DI GCAATG 1 cut(s) 29
BseBI CCWGG 2 cut(s) 855, 992
BseDI CCNNGG 5 cut(s) 93, 159, 193, 472, 1096
BseGI GGATG 2 cut(s) 11, 468
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 4 cut(s) 73, 123, 421, 612
BseXI GCAGC 4 cut(s) 152, 240, 886, 1166
BseYI CCCAGC 1 cut(s) 1019
BsiHKAI GWGCWC 1 cut(s) 192
BsmAI GTCTC 2 cut(s) 542, 929
Bso31I GGTCTC 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 4 cut(s) 97, 646, 760, 820
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 2 cut(s) 108, 1183
BspCNI CTCAG 1 cut(s) 486
BspLI GGNNCC 2 cut(s) 99, 773
BspPI GGATC 3 cut(s) 92, 105, 768
BspTNI GGTCTC 1 cut(s) 542
BsrBI CCGCTC 1 cut(s) 1183
BsrDI GCAATG 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 4 cut(s) 73, 123, 421, 612
BssECI CCNNGG 5 cut(s) 93, 159, 193, 472, 1096
BssMI GATC 4 cut(s) 97, 646, 760, 820
BssNAI GTATAC 1 cut(s) 624
BssT1I CCWWGG 4 cut(s) 93, 193, 472, 1096
Bst1107I GTATAC 1 cut(s) 624
Bst2UI CCWGG 2 cut(s) 855, 992
Bst4CI ACNGT 2 cut(s) 553, 942
BstAUI TGTACA 1 cut(s) 390
BstDEI CTNAG 5 cut(s) 206, 372, 438, 494, 662
BstDSI CCRYGG 2 cut(s) 159, 472
BstF5I GGATG 2 cut(s) 11, 468
BstHHI GCGC 1 cut(s) 637
BstKTI GATC 4 cut(s) 100, 649, 763, 823
BstMAI GTCTC 2 cut(s) 542, 929
BstMBI GATC 4 cut(s) 97, 646, 760, 820
BstMWI GCNNNNNNNGC 3 cut(s) 40, 641, 1121
BstNI CCWGG 2 cut(s) 855, 992
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 853, 990
BstSFI CTRYAG 2 cut(s) 462, 652
BstV1I GCAGC 4 cut(s) 152, 240, 886, 1166
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 3 cut(s) 97, 760, 820
BstXI CCANNNNNNTGG 1 cut(s) 1176
BstYI RGATCY 3 cut(s) 97, 760, 820
BstZ17I GTATAC 1 cut(s) 624
BtgI CCRYGG 2 cut(s) 159, 472
BtsCI GGATG 2 cut(s) 11, 468
BtsIMutI CAGTG 2 cut(s) 619, 1186
CfoI GCGC 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 1146
Csp6I GTAC 2 cut(s) 9, 391
CviAII CATG 4 cut(s) 326, 473, 996, 1176
CviQI GTAC 2 cut(s) 9, 391
DdeI CTNAG 5 cut(s) 206, 372, 438, 494, 662
DpnI GATC 4 cut(s) 99, 648, 762, 822
DpnII GATC 4 cut(s) 97, 646, 760, 820
DraI TTTAAA 1 cut(s) 747
DriI GACNNNNNGTC 1 cut(s) 897
Eam1105I GACNNNNNGTC 1 cut(s) 897
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 4 cut(s) 93, 193, 472, 1096
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 542
Eco32I GATATC 1 cut(s) 1016
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 152, 194
EcoICRI GAGCTC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 2 cut(s) 853, 990
EcoRV GATATC 1 cut(s) 1016
EcoT14I CCWWGG 4 cut(s) 93, 193, 472, 1096
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 4 cut(s) 93, 193, 472, 1096
FaeI CATG 4 cut(s) 329, 476, 999, 1179
FatI CATG 4 cut(s) 325, 472, 995, 1175
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 623
Fnu4HI GCNGC 5 cut(s) 166, 254, 875, 1155, 1184
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 5 cut(s) 166, 254, 875, 1155, 1184
FspBI CTAG 3 cut(s) 360, 641, 1011
GlaI GCGC 1 cut(s) 636
GluI GCNGC 5 cut(s) 166, 254, 875, 1155, 1184
GsaI CCCAGC 1 cut(s) 1023
HgaI GACGC 1 cut(s) 1146
HhaI GCGC 1 cut(s) 637
Hin1II CATG 4 cut(s) 329, 476, 999, 1179
Hin6I GCGC 1 cut(s) 635
HinP1I GCGC 1 cut(s) 635
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 6 cut(s) 55, 136, 407, 578, 832, 850
HphI GGTGA 5 cut(s) 328, 424, 915, 1062, 1160
Hpy166II GTNNAC 3 cut(s) 393, 406, 624
Hpy188I TCNGA 3 cut(s) 174, 495, 918
Hpy8I GTNNAC 3 cut(s) 393, 406, 624
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 553, 942
HpyCH4V TGCA 3 cut(s) 4, 711, 1154
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 641, 1121
HpyF3I CTNAG 5 cut(s) 206, 372, 438, 494, 662
Hsp92II CATG 4 cut(s) 329, 476, 999, 1179
HspAI GCGC 1 cut(s) 635
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 97, 646, 760, 820
LmnI GCTCC 4 cut(s) 195, 727, 777, 1180
Lsp1109I GCAGC 4 cut(s) 152, 240, 886, 1166
LweI GCATC 2 cut(s) 477, 1141
MaeI CTAG 3 cut(s) 360, 641, 1011
MaeIII GTNAC 3 cut(s) 334, 433, 986
MalI GATC 4 cut(s) 99, 648, 762, 822
MbiI CCGCTC 1 cut(s) 1183
MboI GATC 4 cut(s) 97, 646, 760, 820
MboII GAAGA 1 cut(s) 145
MfeI CAATTG 1 cut(s) 692
MflI RGATCY 3 cut(s) 97, 760, 820
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 7 cut(s) 73, 386, 501, 529, 692, 699, 1039
MlyI GAGTC 4 cut(s) 64, 130, 401, 844
MmeI TCCRAC 2 cut(s) 657, 1085
MnlI CCTC 6 cut(s) 57, 172, 247, 489, 750, 1054
MseI TTAA 7 cut(s) 126, 315, 686, 714, 722, 746, 846
MslI CAYNNNNRTG 2 cut(s) 324, 1174
MspA1I CMGCKG 1 cut(s) 1124
MspR9I CCNGG 2 cut(s) 855, 992
MssI GTTTAAAC 1 cut(s) 747
MunI CAATTG 1 cut(s) 692
MvaI CCWGG 2 cut(s) 855, 992
MwoI GCNNNNNNNGC 3 cut(s) 40, 641, 1121
NcoI CCATGG 1 cut(s) 472
NdeII GATC 4 cut(s) 97, 646, 760, 820
NlaIII CATG 4 cut(s) 329, 476, 999, 1179
NlaIV GGNNCC 2 cut(s) 99, 773
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 329
PfeI GAWTC 2 cut(s) 578, 832
PkrI GCNGC 5 cut(s) 167, 255, 876, 1156, 1185
PleI GAGTC 4 cut(s) 63, 130, 401, 844
PmeI GTTTAAAC 1 cut(s) 747
PpsI GAGTC 4 cut(s) 63, 130, 401, 844
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 853, 990
PspFI CCCAGC 1 cut(s) 1019
PspGI CCWGG 2 cut(s) 853, 990
PspN4I GGNNCC 2 cut(s) 99, 773
PspPI GGNCC 1 cut(s) 197
PsuI RGATCY 3 cut(s) 97, 760, 820
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 2 cut(s) 10, 392
RsaNI GTAC 2 cut(s) 9, 391
RseI CAYNNNNRTG 2 cut(s) 324, 1174
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 7 cut(s) 126, 315, 686, 714, 722, 746, 846
SatI GCNGC 5 cut(s) 166, 254, 875, 1155, 1184
Sau3AI GATC 4 cut(s) 97, 646, 760, 820
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 4 cut(s) 64, 130, 401, 844
ScrFI CCNGG 2 cut(s) 855, 992
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 2 cut(s) 477, 1141
SfcI CTRYAG 2 cut(s) 462, 652
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 324, 1174
Sse9I AATT 7 cut(s) 73, 386, 501, 529, 692, 699, 1039
SsiI CCGC 2 cut(s) 108, 1183
SspMI CTAG 3 cut(s) 360, 641, 1011
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 853, 990
StyI CCWWGG 4 cut(s) 93, 193, 472, 1096
TaaI ACNGT 2 cut(s) 553, 942
TasI AATT 7 cut(s) 73, 386, 501, 529, 692, 699, 1039
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 1186
TfiI GAWTC 2 cut(s) 578, 832
Tru1I TTAA 7 cut(s) 126, 315, 686, 714, 722, 746, 846
Tru9I TTAA 7 cut(s) 126, 315, 686, 714, 722, 746, 846
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 4 cut(s) 165, 253, 874, 1154
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 399, 779
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 2 cut(s) 529, 1039
XceI RCATGY 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 623
XspI CTAG 3 cut(s) 360, 641, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.